LOCUS       NZ_OV753995             5752 bp    DNA     circular CON 15-NOV-2023
DEFINITION  Klebsiella pneumoniae isolate BB1539 plasmid BB1539_2, complete
            sequence.
ACCESSION   NZ_OV753995
VERSION     NZ_OV753995.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA12561089
            Sequence Read Archive: ERR8135198, ERR8135747
            Assembly: GCF_928376025.1
KEYWORDS    RefSeq.
SOURCE      Klebsiella pneumoniae
  ORGANISM  Klebsiella pneumoniae
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Klebsiella/Raoultella group; Klebsiella.
REFERENCE   1
  AUTHORS   Delgado-Blas,J.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-JAN-2022) UNIVERSIDAD COMPLUTENSE DE MADRID,
            Antimicrobial Resistance Unit (ARU), Av/ Puerta de Hierro, s/n,
            28040 (Madrid), Spain
COMMENT     ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 11/14/2023 14:40:05
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,486
            CDSs (total)                      :: 5,360
            Genes (coding)                    :: 5,240
            CDSs (with protein)               :: 5,240
            Genes (RNA)                       :: 126
            rRNAs                             :: 9, 8, 8 (5S, 16S, 23S)
            complete rRNAs                    :: 9, 8, 8 (5S, 16S, 23S)
            tRNAs                             :: 88
            ncRNAs                            :: 13
            Pseudo Genes (total)              :: 120
            CDSs (without protein)            :: 120
            Pseudo Genes (ambiguous residues) :: 0 of 120
            Pseudo Genes (frameshifted)       :: 48 of 120
            Pseudo Genes (incomplete)         :: 69 of 120
            Pseudo Genes (internal stop)      :: 19 of 120
            Pseudo Genes (multiple problems)  :: 15 of 120
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            OV753995.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..5752
                     /organism="Klebsiella pneumoniae"
                     /mol_type="genomic DNA"
                     /isolate="BB1539"
                     /db_xref="taxon:573"
                     /plasmid="BB1539_2"
     gene            complement(86..223)
                     /locus_tag="O1Y99_RS27380"
     CDS             complement(86..223)
                     /locus_tag="O1Y99_RS27380"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_267924747.1"
                     /translation="MTPQKTAFLSLFFGMRKSGAAENGRKNGTRLHFLAFFEWLDERLK
                     "
                     /name="hypothetical protein"
     gene            complement(786..1241)
                     /locus_tag="O1Y99_RS27385"
     CDS             complement(786..1241)
                     /locus_tag="O1Y99_RS27385"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_267924753.1"
                     /translation="MYYLICGLFIAIFFIACLLSVIYAAEIYQWQHYSAYKFKRWLKSG
                     SIKKDEEQEKIKREVKKMTIDNILRLLKKYKIDFDANELVKNDFNIKMKYYKLILAEKE
                     RLKENKRLDEELKQKIKIETDTFDAEKFQKEAEERFKIFMKNRNKNK"
                     /name="hypothetical protein"
     gene            complement(1241..1486)
                     /locus_tag="O1Y99_RS27390"
                     /old_locus_tag="VKR_05376"
     CDS             complement(1241..1486)
                     /locus_tag="O1Y99_RS27390"
                     /old_locus_tag="VKR_05376"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_052942900.1"
                     /translation="MNIMGFLGFVAKAKPDVDDGGGSLIPAAMGFFICAFLVAIIASVV
                     SSAFRSAKNSADVSINNAKKYHVALIKEQYRRKGGG"
                     /name="hypothetical protein"
     gene            complement(1483..1896)
                     /locus_tag="O1Y99_RS27395"
                     /old_locus_tag="VKR_05377"
     CDS             complement(1483..1896)
                     /locus_tag="O1Y99_RS27395"
                     /old_locus_tag="VKR_05377"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_267924752.1"
                     /translation="MNNIRPNLNPQREGTADMVNRLNFYDTSFTCLHFLMIDFDNDMQE
                     MKRKKDFHPLMLLNKHDRASLDLEILNIIRISLASKMLDIQSDELLGADLYFNKKDELD
                     MGEDARIIAYVFRDFVKQRIEAAIKTIEEDKNI"
                     /name="hypothetical protein"
     gene            complement(1889..2230)
                     /locus_tag="O1Y99_RS27400"
                     /old_locus_tag="VKR_05378"
     CDS             complement(1889..2230)
                     /locus_tag="O1Y99_RS27400"
                     /old_locus_tag="VKR_05378"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_267924751.1"
                     /translation="MAFNIEKYNKVKKELEQKANLLNRMEQEMKAEKRKEDAARKIKVG
                     AELIRIVRENNIETLDFANDISLLVGALTNNLILKRIHDQREFLRVEGDKRLNEWKLKN
                     NKKRSKADE"
                     /name="hypothetical protein"
     gene            complement(2220..2534)
                     /locus_tag="O1Y99_RS27405"
                     /old_locus_tag="VKR_05379"
     CDS             complement(2220..2534)
                     /locus_tag="O1Y99_RS27405"
                     /old_locus_tag="VKR_05379"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_267924750.1"
                     /translation="MIGNNNDDYDEYLFDDTVEVSLSCEDDEDYLKEQEQEKKSVLQKM
                     IEYKNENTLFGYLYEIAGIFGFTVVLLIGFILTLPILFIAGVIAFFITMKEKREAKNGV
                     "
                     /name="hypothetical protein"
     gene            2878..4032
                     /gene="mobQ"
                     /locus_tag="O1Y99_RS27410"
                     /old_locus_tag="VKR_05380"
     CDS             2878..4032
                     /gene="mobQ"
                     /locus_tag="O1Y99_RS27410"
                     /old_locus_tag="VKR_05380"
                     /inference="COORDINATES: protein motif:HMM:NF041496.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MobQ family relaxase"
                     /protein_id="WP_267924749.1"
                     /translation="MAIFHMSAQTISRSKGHSSVAAAAYRHGEKMTDEHTGEIHDYSKK
                     KGVSDGVVLIPDGADKRFLKPEYLWNTIEKSEKRKDAQLAREFNIALPVEMTNEQKKAL
                     AIDFCNENFVKNGMIADIAFHKLDSDNPHFHVMLTTRKLTPDGSGFGQKVREWNSKEQL
                     EGWRKSWADTANEHMQRAGIDARIDHRSLKDQKAELDAIPSPTVEQQAQAISLDRPPTI
                     HRGHSGNPERQERFDALQEVKVSQEAKALNHIGQNTLKPSPPAPASSPTASLPDAKQGG
                     KKTGSAAATVSGSNINLVDETTDKNLHLTEAQREELEEAENKEAAAKKKAYLSGGAGVP
                     AFAQETKIQSKSEFKNKFSKMKNAINKEDEDEENDYKINRPRLK"
                     /name="mobQ"
     gene            complement(4049..5740)
                     /locus_tag="O1Y99_RS27415"
                     /old_locus_tag="VKR_05381"
     CDS             complement(4049..5740)
                     /locus_tag="O1Y99_RS27415"
                     /old_locus_tag="VKR_05381"
                     /inference="COORDINATES: protein motif:HMM:NF013603.3"
                     /GO_function="GO:0003677 - DNA binding [Evidence IEA]"
                     /GO_process="GO:0006260 - DNA replication [Evidence IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein rep"
                     /protein_id="WP_267924748.1"
                     /translation="MLSRERVSAIRAKVNRAQSSTNKKSVTLSSVSTNGDRITERKKES
                     FKTANSFIIRGKIEENETLTKRGERSLNCAQQRYIVVVNGKAHTVFTHRCRSRHCQNCQ
                     RIKAFVWQEKMKEIFPDLISKYPNHKYLFITFTVKNPKLKNLKSVLICMSRAYAKMFQR
                     KAFKKWFVGDIRSTEITRGNSGEDEAHPHFHALICVHPSYFQGVNYMSADVWGKNWGEC
                     LEAEFKKEGLEYNAADYPKGFPRVDIRLAKSADRKTDITNQNISEHGEQLINYVLKYSV
                     KGSDLLKNGKADAWFWEFDKQVKNIRMIAASGDIKKSLAKLERDQFDYYKEQEKIEKLI
                     ADDVNFKADKAVFKKEDDYNYYLESKKDKYQYIIEAIEAKAYNYQCYYKALLSDHLLAF
                     RSGIDGIIENFRKINKTKTREDFEVLEAAEQELVKIQCERIERLQFICDALVRVGLYKK
                     MSDFVYMNIHTNEKTVIVKNNIVDILKAAEEKLLNDFKQSFMRLENAKTQDIFNTIVDK
                     VNEKSALIKLVRNEILAAGAYAYDADNLEYIDLETNERLEVIATIE"
                     /name="protein rep"
ORIGIN
        1 tgattgtttg aaccctcgac aagttcaact ttaaggggtt ttttatttct gtcaatcact
       61 tacccccgca ttgcatacaa aacgatcact tcagccgctc atccagccac tcaaaaaacg
      121 ccaaaaagtg cagcctcgtc ccatttttgc gcccattttc cgccgctccg cttttcctca
      181 tcccaaaaaa cagggataaa aaggcggttt tttgtggtgt catcccacct tcagccgttt
      241 atccgaaacc ttttgcagat cacatcccaa tacaggagag gaaagggcga ttttatgcag
      301 atccgtccta ttttcagcag gaaccggcgc gagtattttt tggttaaaaa acaggcgttt
      361 cattgaccgc cattgataac ggggttttcg agcaaagcca gacacaccaa ggcgtacagg
      421 ccgatttttg gggttaaaaa aatctgattt gtttcttatt aaacaaggga aggtggtcac
      481 tcgcttcgct cactcccaaa cccaaaaccc aaggacaagg gcggggcggt gaaatgcccc
      541 cgaactcaga tgcagggctg gcactcccac cacttaacaa acccacccgg aacggcagga
      601 ggccagcggc cagagattac catacagaga cacagagaag ggcgtaaagg cggcttaaca
      661 ggcgaaaggc tcgccttgct ctcctttcac catgacaagt tttttttatc tggtgagttg
      721 tcaataaaaa taaaggtatc caccctacgg gcggaacctc cttgattttt tttgacaagt
      781 tgaggttatt tatttttatt acgatttttc atgaatattt taaatcgttc ttctgcttct
      841 ttctgaaact tttcagcgtc aaacgtatca gtttctattt ttattttttg ttttaactct
      901 tcatctaatc ttttattttc tttcagtctt tctttctcgg ctaatataag tttgtaatat
      961 ttcattttaa tattaaaatc atttttcact aactcgttag cgtcaaaatc tattttgtat
     1021 ttcttgagga gtcttaaaat attatctata gtcattttct ttacttccct ttttattttt
     1081 tcttgctcct catctttttt tatacttcca cttttcaacc agcgtttaaa cttgtaagcg
     1141 ctgtaatgct gccactgata tatttcagcg gcatatataa cggaaagcaa acaagcaata
     1201 aaaaatatag ctataaatag accacatatt aaataataca ttacccgccc ccttttcttc
     1261 gatactgctc ttttatcaag gctacgtgat attttttcgc attatttata ctcacatcag
     1321 cagagttttt agcagaacga aaagcacttg aaacaactga cgcaataata gcaactaaaa
     1381 aagcacaaat aaaaaacccc atagcggcgg gaataagact gccgccgcca tcatccacgt
     1441 caggttttgc ttttgctaca aaacccaaaa aacccattat attcatatat ttttatcctc
     1501 ttcgatagtt ttaatcgctg cttctattct ttgttttaca aagtctctaa agacataagc
     1561 tattattctt gcatcctcgc ccatgtctaa ctcgtctttt ttattaaaat ataaatcagc
     1621 gcctaaaagt tcatcgctct gaatatctaa cattttacta gcaagtgata ttctaataat
     1681 atttaatatc tctaaatcta aactcgctct atcgtgttta ttcaaaagca tcagcggatg
     1741 aaaatctttt tttcttttca tttcttgcat gtcattatca aaatctatca ttaagaaatg
     1801 taagcaagta aaagacgtat catagaagtt cagacggttc accatgtccg ccgttccttc
     1861 cctttgaggg tttaggttag gtcttatgtt attcatccgc cttgctcctt ttcttgttgt
     1921 tttttagctt ccattcatta agtcttttat cgccctcaac tctcaaaaac tcgcgttgat
     1981 cgtgtattct ttttaatatt agattattag ttaaagcccc taccaataaa gaaatgtcat
     2041 tcgcaaaatc taaagtttca atattattct ctctaactat tcttattagt tcagcgccaa
     2101 cttttatttt acgcgcagcg tcctctttcc ttttttcagc tttcatctct tgctccatcc
     2161 tatttaataa gtttgctttt tgctcaagct ctttttttac tttattatat ttttctatat
     2221 taaacgccat tttttgcctc tctcttttct ttcattgtaa taaaaaacgc aataactcca
     2281 gcaataaata aaatcggcag agttagaata aaacctatta ataaaaccac agtaaaccca
     2341 aaaatccccg ctatttcgta taaataacca aacaaagtat tttcattttt atactcaatc
     2401 attttctgta aaacagattt tttttcttgc tcctgctctt ttaaataatc ttcatcatct
     2461 tcacaactca aagaaacttc tacagtgtcg tcaaataaat actcgtcgta atcatcgtta
     2521 ttatttccta tcattataaa tcaccccttt tattttttgc gatttctgtt atatatattt
     2581 taagtaatat atttatttat ttaagtaaag cgcgatatat gtatttcatt tttattagcg
     2641 cgattttata gataaaaggt ttacgtgcag cggctatttt agttttgcta aaaactacaa
     2701 tagcgcactt atacattctt cgaatgtgtg cgccccattt catggggatt tactgcaatc
     2761 aaaaaataat aatgaatact cgctttatgc tcatattaca ttattgattt ttgataatgc
     2821 aaaaatagtt ttacttattt tttaatatat gtgcttccaa tagtaggaga aaaaacaatg
     2881 gcaatatttc atatgagcgc ccaaacaata agccgctcaa aaggacatag tagcgtagct
     2941 gcggcggcgt atcgccacgg tgaaaaaatg acagatgagc atacaggaga gatccacgac
     3001 tacagcaaaa aaaagggagt ttctgatggt gtggtattaa tccccgacgg cgcagataaa
     3061 agatttttga aacctgaata cttgtggaac actatcgaaa aaagcgaaaa aagaaaagat
     3121 gcgcagttag cacgcgagtt taatattgcg ctccccgtag aaatgacaaa cgaacaaaaa
     3181 aaagcattag caatagattt ctgtaatgag aactttgtaa aaaatggaat gattgcagat
     3241 atagcttttc ataagctcga tagcgacaac ccacattttc acgtaatgct aacgacaaga
     3301 aagctaaccc cggacggctc cgggttcggg caaaaagtca gggaatggaa cagcaaggag
     3361 cagctcgaag gctggcgcaa gagctgggcg gacacagcga acgagcacat gcaaagggct
     3421 ggcatcgatg cgcgtattga tcatcgttca ctgaaagacc aaaaagcaga gcttgacgct
     3481 atcccctccc ccaccgtgga gcaacaggcg caggctatca gcttagacag accgccgacc
     3541 atacacaggg ggcacagcgg caatccagag cgtcaggaac gctttgacgc gcttcaagaa
     3601 gtgaaagtgt cacaagaagc taaagcactt aaccacatcg gacaaaacac gcttaagccc
     3661 tcgcctccgg ctcctgcttc ctcccctacc gcatctttac cagatgctaa acagggaggc
     3721 aaaaaaacag gttcagcagc ggctacagtt tcaggatcta atatcaatct cgtagatgaa
     3781 acaacagaca aaaatctaca cctaacggaa gcgcagcgcg aagagttaga agaggcagaa
     3841 aataaagaag cggcagcgaa gaaaaaagca tacctcagcg gcggcgctgg cgttcctgct
     3901 tttgctcaag aaactaaaat acagtctaaa agtgagttta aaaataagtt tagcaagatg
     3961 aaaaacgcga ttaataaaga ggatgaagac gaagaaaacg actacaaaat aaatagacca
     4021 cgtttaaaat aatagctcgc aagagctatt attctatagt cgctataact tctaaacgct
     4081 cgttagtttc aagatctata tattcgagat tatcagcatc ataagcatac gcacccgctg
     4141 ccaaaatctc atttcttaca agtttaatca gtgctgattt ttcatttact ttatcaacta
     4201 tagtattaaa tatatcttgc gttttcgcgt tctcaagtct catgaaactt tgcttaaaat
     4261 catttaaaag tttttcttct gctgctttca aaatatctac aatgttattt tttacgataa
     4321 cagttttttc atttgtatga atattcatat aaacaaaatc agacattttc ttatataaac
     4381 caactcttac aagagcatca caaataaact gtaaacgctc tattctttcg cattgtattt
     4441 ttacaagctc ctgctccgcc gcttccaata cttcaaaatc ttctcttgtt ttagttttat
     4501 ttattttgcg aaagttttca ataatgccat caataccgct tctaaaagct aataagtgat
     4561 cggataataa cgctttataa tagcattgat agttatacgc tttagcttca atcgcttcaa
     4621 tgatatattg atacttatct tttttacttt ctaaataata gttgtaatca tcttcttttt
     4681 taaatactgc tttatctgct ttaaagttca catcatcagc gattagtttt tcaatctttt
     4741 cttgttcttt ataataatca aactgatcgc gctcaagttt agcaagtgat tttttaatat
     4801 cgccagaagc tgctatcatt ctaatatttt ttacttgctt gtcgaactcc cagaaccacg
     4861 catcagcctt gccgttcttg agcaagtccg aacctttcac gctatatttt aaaacgtagt
     4921 ttataagctg ctcgccgtgt tcgctgatat tttgattagt aatatctgtt tttctatcag
     4981 cagatttagc aagacgaata tctacgcgag ggaaaccctt tggataatca gccgcgttat
     5041 attctaagcc ttcttttttg aattcagctt ctaagcactc gccccagttt ttgccccaca
     5101 catccgcgct catatagttc acgccctgaa agtatgaagg atgaacgcag atcagcgcgt
     5161 gaaaatgcgg atgcgcttca tcttctccgc tatttccgcg tgttatttca gtagaacgaa
     5221 tatcaccaac gaaccatttt ttaaacgctt tacgttgaaa cattttagcg taagcgcgag
     5281 acatacaaat caatacagat ttaagatttt ttagctttgg atttttaact gtaaatgtaa
     5341 taaacaggta tttatgattg ggatatttag aaatgagatc ggggaatatc tctttcattt
     5401 tttcttgcca cacaaaagcc tttattctct ggcagttttg gcaatgacga gagcggcagc
     5461 ggtgagtaaa tacggtatgt gctttaccat taaccacgac aatataacgc tgttgcgcac
     5521 agtttaaaga gcgttcaccg cgcttagtga gagtttcatt ttcttcaatc ttgccgcgaa
     5581 taataaaact attcgctgtt ttgaaacttt cttttttgcg ttctgttatt ctatcgccat
     5641 tcgtcgaaac gcttgaaagc gttacgcttt ttttatttgt tgagctttgc gctctattga
     5701 ctttcgcgcg tatagcgctt actctttccc ttgaaagcat ataaaaaacc cc
//
