LOCUS       NZ_OV753990             5752 bp    DNA     circular CON 21-JAN-2024
DEFINITION  Klebsiella pneumoniae isolate BB1542 plasmid BB1542_2, complete
            sequence.
ACCESSION   NZ_OV753990
VERSION     NZ_OV753990.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA12561091
            Sequence Read Archive: ERR8135200, ERR8135749
            Assembly: GCF_928375135.1
KEYWORDS    RefSeq.
SOURCE      Klebsiella pneumoniae
  ORGANISM  Klebsiella pneumoniae
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Klebsiella/Raoultella group; Klebsiella.
REFERENCE   1
  AUTHORS   Delgado-Blas,J.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-JAN-2022) UNIVERSIDAD COMPLUTENSE DE MADRID,
            Antimicrobial Resistance Unit (ARU), Av/ Puerta de Hierro, s/n,
            28040 (Madrid), Spain
COMMENT     ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 01/21/2024 02:47:20
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,482
            CDSs (total)                      :: 5,356
            Genes (coding)                    :: 5,230
            CDSs (with protein)               :: 5,230
            Genes (RNA)                       :: 126
            rRNAs                             :: 9, 8, 8 (5S, 16S, 23S)
            complete rRNAs                    :: 9, 8, 8 (5S, 16S, 23S)
            tRNAs                             :: 88
            ncRNAs                            :: 13
            Pseudo Genes (total)              :: 126
            CDSs (without protein)            :: 126
            Pseudo Genes (ambiguous residues) :: 0 of 126
            Pseudo Genes (frameshifted)       :: 55 of 126
            Pseudo Genes (incomplete)         :: 68 of 126
            Pseudo Genes (internal stop)      :: 20 of 126
            Pseudo Genes (multiple problems)  :: 16 of 126
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            OV753990.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..5752
                     /organism="Klebsiella pneumoniae"
                     /mol_type="genomic DNA"
                     /isolate="BB1542"
                     /db_xref="taxon:573"
                     /plasmid="BB1542_2"
     gene            complement(join(5384..5752,1..786))
                     /gene="mobQ"
                     /locus_tag="O0552_RS27300"
     CDS             complement(join(5384..5752,1..786))
                     /gene="mobQ"
                     /locus_tag="O0552_RS27300"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="MobQ family relaxase"
                     /protein_id="WP_267924749.1"
                     /translation="MAIFHMSAQTISRSKGHSSVAAAAYRHGEKMTDEHTGEIHDYSKK
                     KGVSDGVVLIPDGADKRFLKPEYLWNTIEKSEKRKDAQLAREFNIALPVEMTNEQKKAL
                     AIDFCNENFVKNGMIADIAFHKLDSDNPHFHVMLTTRKLTPDGSGFGQKVREWNSKEQL
                     EGWRKSWADTANEHMQRAGIDARIDHRSLKDQKAELDAIPSPTVEQQAQAISLDRPPTI
                     HRGHSGNPERQERFDALQEVKVSQEAKALNHIGQNTLKPSPPAPASSPTASLPDAKQGG
                     KKTGSAAATVSGSNINLVDETTDKNLHLTEAQREELEEAENKEAAAKKKAYLSGGAGVP
                     AFAQETKIQSKSEFKNKFSKMKNAINKEDEDEENDYKINRPRLK"
                     /name="mobQ"
     gene            1130..1444
                     /locus_tag="O0552_RS27305"
                     /old_locus_tag="VKR_05368"
     CDS             1130..1444
                     /locus_tag="O0552_RS27305"
                     /old_locus_tag="VKR_05368"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_267924750.1"
                     /translation="MIGNNNDDYDEYLFDDTVEVSLSCEDDEDYLKEQEQEKKSVLQKM
                     IEYKNENTLFGYLYEIAGIFGFTVVLLIGFILTLPILFIAGVIAFFITMKEKREAKNGV
                     "
                     /name="hypothetical protein"
     gene            1434..1775
                     /locus_tag="O0552_RS27310"
                     /old_locus_tag="VKR_05369"
     CDS             1434..1775
                     /locus_tag="O0552_RS27310"
                     /old_locus_tag="VKR_05369"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_267924751.1"
                     /translation="MAFNIEKYNKVKKELEQKANLLNRMEQEMKAEKRKEDAARKIKVG
                     AELIRIVRENNIETLDFANDISLLVGALTNNLILKRIHDQREFLRVEGDKRLNEWKLKN
                     NKKRSKADE"
                     /name="hypothetical protein"
     gene            1768..2181
                     /locus_tag="O0552_RS27315"
                     /old_locus_tag="VKR_05370"
     CDS             1768..2181
                     /locus_tag="O0552_RS27315"
                     /old_locus_tag="VKR_05370"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_267924752.1"
                     /translation="MNNIRPNLNPQREGTADMVNRLNFYDTSFTCLHFLMIDFDNDMQE
                     MKRKKDFHPLMLLNKHDRASLDLEILNIIRISLASKMLDIQSDELLGADLYFNKKDELD
                     MGEDARIIAYVFRDFVKQRIEAAIKTIEEDKNI"
                     /name="hypothetical protein"
     gene            2178..2423
                     /locus_tag="O0552_RS27320"
                     /old_locus_tag="VKR_05371"
     CDS             2178..2423
                     /locus_tag="O0552_RS27320"
                     /old_locus_tag="VKR_05371"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_052942900.1"
                     /translation="MNIMGFLGFVAKAKPDVDDGGGSLIPAAMGFFICAFLVAIIASVV
                     SSAFRSAKNSADVSINNAKKYHVALIKEQYRRKGGG"
                     /name="hypothetical protein"
     gene            2423..2878
                     /locus_tag="O0552_RS27325"
     CDS             2423..2878
                     /locus_tag="O0552_RS27325"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_267924753.1"
                     /translation="MYYLICGLFIAIFFIACLLSVIYAAEIYQWQHYSAYKFKRWLKSG
                     SIKKDEEQEKIKREVKKMTIDNILRLLKKYKIDFDANELVKNDFNIKMKYYKLILAEKE
                     RLKENKRLDEELKQKIKIETDTFDAEKFQKEAEERFKIFMKNRNKNK"
                     /name="hypothetical protein"
     gene            3441..3578
                     /locus_tag="O0552_RS27330"
     CDS             3441..3578
                     /locus_tag="O0552_RS27330"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_267924747.1"
                     /translation="MTPQKTAFLSLFFGMRKSGAAENGRKNGTRLHFLAFFEWLDERLK
                     "
                     /name="hypothetical protein"
     gene            3676..5367
                     /locus_tag="O0552_RS27335"
                     /old_locus_tag="VKR_05373"
     CDS             3676..5367
                     /locus_tag="O0552_RS27335"
                     /old_locus_tag="VKR_05373"
                     /inference="COORDINATES: protein motif:HMM:NF013603.4"
                     /GO_function="GO:0003677 - DNA binding [Evidence IEA]"
                     /GO_process="GO:0006260 - DNA replication [Evidence IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein rep"
                     /protein_id="WP_267924748.1"
                     /translation="MLSRERVSAIRAKVNRAQSSTNKKSVTLSSVSTNGDRITERKKES
                     FKTANSFIIRGKIEENETLTKRGERSLNCAQQRYIVVVNGKAHTVFTHRCRSRHCQNCQ
                     RIKAFVWQEKMKEIFPDLISKYPNHKYLFITFTVKNPKLKNLKSVLICMSRAYAKMFQR
                     KAFKKWFVGDIRSTEITRGNSGEDEAHPHFHALICVHPSYFQGVNYMSADVWGKNWGEC
                     LEAEFKKEGLEYNAADYPKGFPRVDIRLAKSADRKTDITNQNISEHGEQLINYVLKYSV
                     KGSDLLKNGKADAWFWEFDKQVKNIRMIAASGDIKKSLAKLERDQFDYYKEQEKIEKLI
                     ADDVNFKADKAVFKKEDDYNYYLESKKDKYQYIIEAIEAKAYNYQCYYKALLSDHLLAF
                     RSGIDGIIENFRKINKTKTREDFEVLEAAEQELVKIQCERIERLQFICDALVRVGLYKK
                     MSDFVYMNIHTNEKTVIVKNNIVDILKAAEEKLLNDFKQSFMRLENAKTQDIFNTIVDK
                     VNEKSALIKLVRNEILAAGAYAYDADNLEYIDLETNERLEVIATIE"
                     /name="protein rep"
ORIGIN
        1 cgagggctta agcgtgtttt gtccgatgtg gttaagtgct ttagcttctt gtgacacttt
       61 cacttcttga agcgcgtcaa agcgttcctg acgctctgga ttgccgctgt gccccctgtg
      121 tatggtcggc ggtctgtcta agctgatagc ctgcgcctgt tgctccacgg tgggggaggg
      181 gatagcgtca agctctgctt tttggtcttt cagtgaacga tgatcaatac gcgcatcgat
      241 gccagccctt tgcatgtgct cgttcgctgt gtccgcccag ctcttgcgcc agccttcgag
      301 ctgctccttg ctgttccatt ccctgacttt ttgcccgaac ccggagccgt ccggggttag
      361 ctttcttgtc gttagcatta cgtgaaaatg tgggttgtcg ctatcgagct tatgaaaagc
      421 tatatctgca atcattccat tttttacaaa gttctcatta cagaaatcta ttgctaatgc
      481 ttttttttgt tcgtttgtca tttctacggg gagcgcaata ttaaactcgc gtgctaactg
      541 cgcatctttt cttttttcgc ttttttcgat agtgttccac aagtattcag gtttcaaaaa
      601 tcttttatct gcgccgtcgg ggattaatac cacaccatca gaaactccct tttttttgct
      661 gtagtcgtgg atctctcctg tatgctcatc tgtcattttt tcaccgtggc gatacgccgc
      721 cgcagctacg ctactatgtc cttttgagcg gcttattgtt tgggcgctca tatgaaatat
      781 tgccattgtt ttttctccta ctattggaag cacatatatt aaaaaataag taaaactatt
      841 tttgcattat caaaaatcaa taatgtaata tgagcataaa gcgagtattc attattattt
      901 tttgattgca gtaaatcccc atgaaatggg gcgcacacat tcgaagaatg tataagtgcg
      961 ctattgtagt ttttagcaaa actaaaatag ccgctgcacg taaacctttt atctataaaa
     1021 tcgcgctaat aaaaatgaaa tacatatatc gcgctttact taaataaata aatatattac
     1081 ttaaaatata tataacagaa atcgcaaaaa ataaaagggg tgatttataa tgataggaaa
     1141 taataacgat gattacgacg agtatttatt tgacgacact gtagaagttt ctttgagttg
     1201 tgaagatgat gaagattatt taaaagagca ggagcaagaa aaaaaatctg ttttacagaa
     1261 aatgattgag tataaaaatg aaaatacttt gtttggttat ttatacgaaa tagcggggat
     1321 ttttgggttt actgtggttt tattaatagg ttttattcta actctgccga ttttatttat
     1381 tgctggagtt attgcgtttt ttattacaat gaaagaaaag agagaggcaa aaaatggcgt
     1441 ttaatataga aaaatataat aaagtaaaaa aagagcttga gcaaaaagca aacttattaa
     1501 ataggatgga gcaagagatg aaagctgaaa aaaggaaaga ggacgctgcg cgtaaaataa
     1561 aagttggcgc tgaactaata agaatagtta gagagaataa tattgaaact ttagattttg
     1621 cgaatgacat ttctttattg gtaggggctt taactaataa tctaatatta aaaagaatac
     1681 acgatcaacg cgagtttttg agagttgagg gcgataaaag acttaatgaa tggaagctaa
     1741 aaaacaacaa gaaaaggagc aaggcggatg aataacataa gacctaacct aaaccctcaa
     1801 agggaaggaa cggcggacat ggtgaaccgt ctgaacttct atgatacgtc ttttacttgc
     1861 ttacatttct taatgataga ttttgataat gacatgcaag aaatgaaaag aaaaaaagat
     1921 tttcatccgc tgatgctttt gaataaacac gatagagcga gtttagattt agagatatta
     1981 aatattatta gaatatcact tgctagtaaa atgttagata ttcagagcga tgaactttta
     2041 ggcgctgatt tatattttaa taaaaaagac gagttagaca tgggcgagga tgcaagaata
     2101 atagcttatg tctttagaga ctttgtaaaa caaagaatag aagcagcgat taaaactatc
     2161 gaagaggata aaaatatatg aatataatgg gttttttggg ttttgtagca aaagcaaaac
     2221 ctgacgtgga tgatggcggc ggcagtctta ttcccgccgc tatggggttt tttatttgtg
     2281 cttttttagt tgctattatt gcgtcagttg tttcaagtgc ttttcgttct gctaaaaact
     2341 ctgctgatgt gagtataaat aatgcgaaaa aatatcacgt agccttgata aaagagcagt
     2401 atcgaagaaa agggggcggg taatgtatta tttaatatgt ggtctattta tagctatatt
     2461 ttttattgct tgtttgcttt ccgttatata tgccgctgaa atatatcagt ggcagcatta
     2521 cagcgcttac aagtttaaac gctggttgaa aagtggaagt ataaaaaaag atgaggagca
     2581 agaaaaaata aaaagggaag taaagaaaat gactatagat aatattttaa gactcctcaa
     2641 gaaatacaaa atagattttg acgctaacga gttagtgaaa aatgatttta atattaaaat
     2701 gaaatattac aaacttatat tagccgagaa agaaagactg aaagaaaata aaagattaga
     2761 tgaagagtta aaacaaaaaa taaaaataga aactgatacg tttgacgctg aaaagtttca
     2821 gaaagaagca gaagaacgat ttaaaatatt catgaaaaat cgtaataaaa ataaataacc
     2881 tcaacttgtc aaaaaaaatc aaggaggttc cgcccgtagg gtggatacct ttatttttat
     2941 tgacaactca ccagataaaa aaaacttgtc atggtgaaag gagagcaagg cgagcctttc
     3001 gcctgttaag ccgcctttac gcccttctct gtgtctctgt atggtaatct ctggccgctg
     3061 gcctcctgcc gttccgggtg ggtttgttaa gtggtgggag tgccagccct gcatctgagt
     3121 tcgggggcat ttcaccgccc cgcccttgtc cttgggtttt gggtttggga gtgagcgaag
     3181 cgagtgacca ccttcccttg tttaataaga aacaaatcag atttttttaa ccccaaaaat
     3241 cggcctgtac gccttggtgt gtctggcttt gctcgaaaac cccgttatca atggcggtca
     3301 atgaaacgcc tgttttttaa ccaaaaaata ctcgcgccgg ttcctgctga aaataggacg
     3361 gatctgcata aaatcgccct ttcctctcct gtattgggat gtgatctgca aaaggtttcg
     3421 gataaacggc tgaaggtggg atgacaccac aaaaaaccgc ctttttatcc ctgttttttg
     3481 ggatgaggaa aagcggagcg gcggaaaatg ggcgcaaaaa tgggacgagg ctgcactttt
     3541 tggcgttttt tgagtggctg gatgagcggc tgaagtgatc gttttgtatg caatgcgggg
     3601 gtaagtgatt gacagaaata aaaaacccct taaagttgaa cttgtcgagg gttcaaacaa
     3661 tcaggggttt tttatatgct ttcaagggaa agagtaagcg ctatacgcgc gaaagtcaat
     3721 agagcgcaaa gctcaacaaa taaaaaaagc gtaacgcttt caagcgtttc gacgaatggc
     3781 gatagaataa cagaacgcaa aaaagaaagt ttcaaaacag cgaatagttt tattattcgc
     3841 ggcaagattg aagaaaatga aactctcact aagcgcggtg aacgctcttt aaactgtgcg
     3901 caacagcgtt atattgtcgt ggttaatggt aaagcacata ccgtatttac tcaccgctgc
     3961 cgctctcgtc attgccaaaa ctgccagaga ataaaggctt ttgtgtggca agaaaaaatg
     4021 aaagagatat tccccgatct catttctaaa tatcccaatc ataaatacct gtttattaca
     4081 tttacagtta aaaatccaaa gctaaaaaat cttaaatctg tattgatttg tatgtctcgc
     4141 gcttacgcta aaatgtttca acgtaaagcg tttaaaaaat ggttcgttgg tgatattcgt
     4201 tctactgaaa taacacgcgg aaatagcgga gaagatgaag cgcatccgca ttttcacgcg
     4261 ctgatctgcg ttcatccttc atactttcag ggcgtgaact atatgagcgc ggatgtgtgg
     4321 ggcaaaaact ggggcgagtg cttagaagct gaattcaaaa aagaaggctt agaatataac
     4381 gcggctgatt atccaaaggg tttccctcgc gtagatattc gtcttgctaa atctgctgat
     4441 agaaaaacag atattactaa tcaaaatatc agcgaacacg gcgagcagct tataaactac
     4501 gttttaaaat atagcgtgaa aggttcggac ttgctcaaga acggcaaggc tgatgcgtgg
     4561 ttctgggagt tcgacaagca agtaaaaaat attagaatga tagcagcttc tggcgatatt
     4621 aaaaaatcac ttgctaaact tgagcgcgat cagtttgatt attataaaga acaagaaaag
     4681 attgaaaaac taatcgctga tgatgtgaac tttaaagcag ataaagcagt atttaaaaaa
     4741 gaagatgatt acaactatta tttagaaagt aaaaaagata agtatcaata tatcattgaa
     4801 gcgattgaag ctaaagcgta taactatcaa tgctattata aagcgttatt atccgatcac
     4861 ttattagctt ttagaagcgg tattgatggc attattgaaa actttcgcaa aataaataaa
     4921 actaaaacaa gagaagattt tgaagtattg gaagcggcgg agcaggagct tgtaaaaata
     4981 caatgcgaaa gaatagagcg tttacagttt atttgtgatg ctcttgtaag agttggttta
     5041 tataagaaaa tgtctgattt tgtttatatg aatattcata caaatgaaaa aactgttatc
     5101 gtaaaaaata acattgtaga tattttgaaa gcagcagaag aaaaactttt aaatgatttt
     5161 aagcaaagtt tcatgagact tgagaacgcg aaaacgcaag atatatttaa tactatagtt
     5221 gataaagtaa atgaaaaatc agcactgatt aaacttgtaa gaaatgagat tttggcagcg
     5281 ggtgcgtatg cttatgatgc tgataatctc gaatatatag atcttgaaac taacgagcgt
     5341 ttagaagtta tagcgactat agaataatag ctcttgcgag ctattatttt aaacgtggtc
     5401 tatttatttt gtagtcgttt tcttcgtctt catcctcttt attaatcgcg tttttcatct
     5461 tgctaaactt atttttaaac tcacttttag actgtatttt agtttcttga gcaaaagcag
     5521 gaacgccagc gccgccgctg aggtatgctt ttttcttcgc tgccgcttct ttattttctg
     5581 cctcttctaa ctcttcgcgc tgcgcttccg ttaggtgtag atttttgtct gttgtttcat
     5641 ctacgagatt gatattagat cctgaaactg tagccgctgc tgaacctgtt tttttgcctc
     5701 cctgtttagc atctggtaaa gatgcggtag gggaggaagc aggagccgga gg
//
