LOCUS       NZ_OV753639             4494 bp    DNA     circular CON 14-JAN-2024
DEFINITION  Klebsiella quasipneumoniae isolate BB1501 plasmid BB1501_4, complete
            sequence.
ACCESSION   NZ_OV753639
VERSION     NZ_OV753639.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA12561087
            Sequence Read Archive: ERR8135196, ERR8135745
            Assembly: GCF_928371855.1
KEYWORDS    RefSeq.
SOURCE      Klebsiella quasipneumoniae
  ORGANISM  Klebsiella quasipneumoniae
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Klebsiella/Raoultella group; Klebsiella.
REFERENCE   1
  AUTHORS   Delgado-Blas,J.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-JAN-2022) UNIVERSIDAD COMPLUTENSE DE MADRID,
            Antimicrobial Resistance Unit (ARU), Av/ Puerta de Hierro, s/n,
            28040 (Madrid), Spain
COMMENT     ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 01/14/2024 03:36:52
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,734
            CDSs (total)                      :: 5,608
            Genes (coding)                    :: 5,392
            CDSs (with protein)               :: 5,392
            Genes (RNA)                       :: 126
            rRNAs                             :: 9, 8, 8 (5S, 16S, 23S)
            complete rRNAs                    :: 9, 8, 8 (5S, 16S, 23S)
            tRNAs                             :: 86
            ncRNAs                            :: 15
            Pseudo Genes (total)              :: 216
            CDSs (without protein)            :: 216
            Pseudo Genes (ambiguous residues) :: 0 of 216
            Pseudo Genes (frameshifted)       :: 114 of 216
            Pseudo Genes (incomplete)         :: 101 of 216
            Pseudo Genes (internal stop)      :: 41 of 216
            Pseudo Genes (multiple problems)  :: 35 of 216
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            OV753639.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..4494
                     /organism="Klebsiella quasipneumoniae"
                     /mol_type="genomic DNA"
                     /isolate="BB1501"
                     /db_xref="taxon:1463165"
                     /plasmid="BB1501_4"
     gene            complement(93..168)
                     /locus_tag="OZE11_RS28475"
                     /old_locus_tag="VKR_05677"
     tRNA            complement(93..168)
                     /locus_tag="OZE11_RS28475"
                     /old_locus_tag="VKR_05677"
                     /product="tRNA-Arg"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(133..135),aa:Arg,seq:tct)
                     /name="tRNA-Arg"
     gene            complement(349..591)
                     /locus_tag="OZE11_RS28480"
                     /old_locus_tag="VKR_05678"
     CDS             complement(349..591)
                     /locus_tag="OZE11_RS28480"
                     /old_locus_tag="VKR_05678"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017446859.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_074196216.1"
                     /translation="MSKESELEFRTKELERQMKGVQRRIEVVNAKYDSQTKKQERRIRD
                     LEIKTAVQSGVTQREVANIYELSPGRVNQIIKKVG"
                     /name="hypothetical protein"
     gene            981..1376
                     /locus_tag="OZE11_RS28485"
     CDS             981..1376
                     /locus_tag="OZE11_RS28485"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_126066683.1"
                     /translation="MNANEVKDILEHSNHDDWIVDDETGSFTYKNDLNLHIKRADYDNY
                     NSFSEPWAVSHPNPNACSVQYTVNYGSSFVDRKTLVSVDGHRATLPMPASANDLTVTSA
                     DVNFAKIVDTGERVDEYILRSGLKVQP"
                     /name="hypothetical protein"
     gene            complement(1466..2017)
                     /locus_tag="OZE11_RS28490"
                     /old_locus_tag="VKR_05679"
     CDS             complement(1466..2017)
                     /locus_tag="OZE11_RS28490"
                     /old_locus_tag="VKR_05679"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_267668043.1"
                     /translation="MARIHAIKRSGLHIDIDYVVHKKIALDRAVILRYSTKNPDYHADF
                     VGLSEPEIEREKDLILKENDTTHCLLLLTAIEAIFRLDADQKYCNKKRDPLSRKIKEIY
                     DKTKGEKIKLDDDLINTRMNEDDARLKKDYNDLKTCFKFRHWLAHGRYWHPKRIKNFYF
                     DSILIVIDSILNSTKYNFEV"
                     /name="hypothetical protein"
     gene            complement(2010..2576)
                     /locus_tag="OZE11_RS28495"
                     /old_locus_tag="VKR_05680"
     CDS             complement(2010..2576)
                     /locus_tag="OZE11_RS28495"
                     /old_locus_tag="VKR_05680"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_064279389.1"
                     /translation="MNMKTLKDIIEKQKKEEEEQKFDPAEQIEEYISLVEKLYTITLES
                     IDELIKDGLIKQSRKKISINEESLGDYEIDSLILTINSSKIKFEPVGTMLIGSKGRVDV
                     TGPFGKEKFILIRKGVKSPSDLIKVRVNVVGAYKPEKDKTDEDVKKPSIDDWEWKTMPS
                     DSRWVKFDDVNSETITNIIMRMING"
                     /name="hypothetical protein"
     gene            complement(2843..2956)
                     /locus_tag="OZE11_RS28715"
     CDS             complement(2843..2956)
                     /locus_tag="OZE11_RS28715"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005761324.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="replication initiation protein"
                     /protein_id="WP_072013440.1"
                     /translation="MHEPPVQSDCCALSGNYHLESNPVRHAKAPLAAATGN"
                     /name="replication initiation protein"
     gene            3372..3563
                     /locus_tag="OZE11_RS28500"
                     /old_locus_tag="VKR_05682"
     CDS             3372..3563
                     /locus_tag="OZE11_RS28500"
                     /old_locus_tag="VKR_05682"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000166328.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Rop family plasmid primer RNA-binding protein"
                     /protein_id="WP_044525164.1"
                     /translation="MSKQQKTALNMAKFIQNQSLLLLEKLNELDLDVEADLCEKLHDDA
                     EHLFRTLSSRLDALQDGN"
                     /name="Rop family plasmid primer RNA-binding protein"
     gene            3563..3964
                     /locus_tag="OZE11_RS28505"
                     /old_locus_tag="VKR_05683"
     CDS             3563..3964
                     /locus_tag="OZE11_RS28505"
                     /old_locus_tag="VKR_05683"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009310048.1"
                     /GO_function="GO:0003677 - DNA binding [Evidence IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="WP_012579088.1"
                     /translation="MARVSISEAARLTGKSRTTLHRLIKAGDLSTCSGERNAKMVDTSE
                     LLRVFGPFEQPKGEHHSGQVSGQRDTASADQSEQVIRHLKQEIEHLNTLLLSKDSHIDS
                     LKQAMLLLENHQAKLTESPAPWWKFWKKS"
                     /name="helix-turn-helix domain-containing protein"
     Typing          complement(2844..3251)
                     /name="ColRNAI_rep_cluster_1987"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="95.355"
                     /coverage="99.0"
                     /evalue="0.0"
ORIGIN
        1 ctgaggccgt tttagcggtg cgcgtaatgc gacgttatgg taaatgctgt ggccagaata
       61 gttgcctccc cccttttagg gggggaggct tttggtggag acaatgggat ttgaacccac
      121 aaccatcaga ttagaagtcc gctgctctac cgttgaagct atatccccat ctggacccaa
      181 caaagtcggg accgtctttg atttaacatc actgcatgct ttttgtgaag ttttttatgt
      241 gtttaccggt cgcatcagaa cagggtatgt aatgagacct tatggtaaaa agcacgtcag
      301 tttgtattgc gagaaaaaac cgccttttgg cggttttttc tctagagatt agccgacttt
      361 tttaatgatc tgattaacgc gacccggcga cagttcgtaa atgtttgcaa cctcacgttg
      421 cgtaacgcct gactggactg ctgttttgat ttccaaatca cgaatgcgac gttcttgctt
      481 cttggtttgg ctgtcgtatt tggcgttaac cacctcaata cgtcgctgga cacctttcat
      541 ttgacgttcg agttcttttg ttctgaactc tagttctgat tctttactca tatgatatac
      601 tcgctaagta aggttattgt tgggtgtcat tcgaaggttt cttcttgccg gaaggtctta
      661 acctatgttt gacaaatcaa caatagcctt tttttacgat cacagcaact tctataatca
      721 gtgtttcccc ttatttttct ttgtttttat tttccaataa aaacaataag ttgcgattgg
      781 tttaattctg atattaaaaa ggctaaacac acctatttta tgtatatgat ttttaagtga
      841 aaaaacaaat cgatgtttag tatttattat ttgattcttt actggaaaat ttgattgtac
      901 atagagaact tttcggagca gtgtggtgta gaactcaatc gatctttaca ttctaaccat
      961 tgatttatat gggggtatgc atgaatgcta atgaagtaaa agacattctt gaacattcta
     1021 atcatgatga ttggattgtg gatgatgaga ctgggtcgtt tacatataaa aacgacttaa
     1081 atttgcacat taagagagcg gactatgaca actacaactc ctttagtgaa ccctgggctg
     1141 ttagtcatcc gaatccgaat gcctgttcag tacagtacac cgtaaactat ggttcatcat
     1201 ttgttgatag aaagactttg gtttctgtcg atggtcaccg cgcaaccttg cctatgcctg
     1261 catccgcaaa tgatttaacc gtgacatcag ctgacgtgaa ctttgccaaa attgtagata
     1321 ctggggagcg tgttgatgaa tacattctcc gctctggtct taaagttcaa ccatgattta
     1381 aatgtgagcc agcaatctaa aattgctggc tcataatgtg ctgtgcttaa gggacgttat
     1441 ggtgactttt tttaatgtca ctgacctaaa cttcaaaatt gtatttggtt gagtttaaaa
     1501 tggaatctat cactattagt atagagtcga aataaaaatt ctttattctc tttggatgcc
     1561 agtatcttcc atgagcaagc caatgcctga atttaaaaca tgtttttaga tcgttgtagt
     1621 ctttttttaa tctagcatca tcttcattca ttctggtatt tattaaatca tcatctaatt
     1681 ttattttttc tccttttgtt ttatcatata tctcttttat ttttcttgat aatgggtctc
     1741 tttttttatt gcagtacttc tgatctgcat ctaatcgaaa tattgcttca atagctgtta
     1801 acaataaaag gcaatgtgtt gtgtcatttt cttttagtat taagtctttt tctctttcaa
     1861 tctccggctc acttaagccg acgaaatcgg catggtaatc tgggttcttt gttgaatacc
     1921 gcagaattac agcacgatcg agtgctatct ttttatgtac gacatagtca atgtctatgt
     1981 gtagaccaga tcttttaatt gcatgaatcc tagccattta tcattctcat aataatattc
     2041 gtaatggtct cggaattcac atcatcaaat ttaacccatc gactatcgct aggcattgtt
     2101 ttccattccc aatcatcaat tgacggcttt ttcacatctt catcggtctt atctttttct
     2161 ggtttatatg ccccgactac gttaactctt acttttatta aatcgctggg gcttttgact
     2221 ccttttctga tcagaatgaa tttttctttt ccaaatggcc ctgtgacgtc aacccttcct
     2281 tttgaaccta ttagcatggt tcctactggc tcaaatttta ttttacttga gtttatagtg
     2341 agtattagag agtcgatttc ataatcacct agagactctt catttattga tatttttttt
     2401 cttgattgtt ttatcaatcc atctttgatt agttcgtcaa tagattctaa tgtaatagta
     2461 tataattttt caacaaggct tatgtattct tctatttgtt ccgctgggtc gaatttttgt
     2521 tcttcttctt cttttttttg tttttcaatt atatctttca gcgttttcat gttcattttt
     2581 tgtaacctct agatcggaat tattttacga ttctagcctt tgctttggtg tcgagcaatg
     2641 tgttgttctt gacgcttaac ttgctcggag gtattgtcgc ttctgaaacg aaaaaaccgc
     2701 cttggcgggc ggttttttcg aaggttcata gagttggcgc tcgttgaacc gaggtaactg
     2761 gcttggagga gcgcagtcac caaaacttgt tctttcagtt tagccttaac tggcgcataa
     2821 cttcaagaca aactcctcta aatcagttac cagtggctgc tgccagtggc gcttttgcat
     2881 gtcttaccgg gttggactca agatgatagt taccggataa ggcgcagcag tcggactgaa
     2941 cggggggttc gtgcatacag tccagcttgg agcgaactgc ctacccggaa ctgagtgtca
     3001 ggcgtggaat gagataaacg cggccataac agcggattga cactggtaaa ccgaaaggca
     3061 ggaacaggag agcgcacgag ggagccatca gggggaaacg cctggtatct ttatagtcct
     3121 gtcgggtttc gccaccactg atttgagcgt caaattctgt gatgcttgtc aggggggcgg
     3181 agcctatgga aaaacggccg ccgtgcggca tttccttttc cccgtcacgc taccgctcgg
     3241 ttttctcgag ctcttgtacg catactcctg ccgctcgccg cagccgaacg gcaggagcgt
     3301 agcgactgag tgagcgagga agcggaaaag agaacatacc tacactgagc actgacgctc
     3361 tgaggcctct tatgtctaaa caacagaaaa cagcgctgaa catggctaaa ttcatccaga
     3421 atcagtctct gctcctgctg gagaaactta acgagcttga tctcgatgtc gaagccgacc
     3481 tttgtgagaa actccacgat gatgcggagc atcttttccg tacactgtcc tcgagactgg
     3541 atgcattaca ggatggtaac tgatggccag agtgtctatt agtgaggctg cccgactgac
     3601 gggtaagagt agaacaacac tgcacaggtt aattaaagca ggtgacctgt ccacctgtag
     3661 cggtgaacgt aatgcaaaaa tggtagatac ttcagagctt ttacgtgtct ttggtccctt
     3721 tgagcaaccg aagggtgaac accattctgg acaggtctct ggacagcgtg atacagcctc
     3781 tgctgaccag agtgaacagg tgattcgtca tctgaaacag gagattgaac acctgaacac
     3841 cttacttttg tccaaggatt cgcacattga cagcctgaaa caggccatgc tccttcttga
     3901 aaatcaccag gcaaaattaa ctgaatcacc ggcgccatgg tggaaattct ggaaaaaatc
     3961 ctgaccccgt catgcttcag ttttcctctc cggccatccc ggggagttcc tgaaccttcc
     4021 caaaaatcgt cagatctctg aacgctcctc accactaaaa atacccacac cccacgcaaa
     4081 attaaaattt tgaagataac tcattaatat cagttagttg tgggttatta aattacgcag
     4141 tattactttc tgtaaggtga atccaagtcg tcggcgattc gtgtacgact tgccgacgac
     4201 tcgtcataga gtcatcgacg actcacataa gactatcagt aacttatgac gacttgactc
     4261 tagagtcgaa tcgtcatttt ggtgtttttt tgaccttgac gactctagag tcaagtcacg
     4321 agtcgaatcg ccggtgaatc gtgtggtgag tcgtccgtcg acttgccata acgtgattgc
     4381 cggccgtcga cgaacccgat tcctgatcgt gctgaaaacc ggttttccgg ctgcgccggc
     4441 aacgcttcac ggccacgcaa taaattgcgt ccccgttcac cgttttcgga tggg
//
