LOCUS       NZ_OV049811             4715 bp    DNA     circular CON 01-FEB-2024
DEFINITION  Klebsiella pneumoniae strain DJ isolate DJ plasmid DJ_3_ColRNA,
            complete sequence.
ACCESSION   NZ_OV049811
VERSION     NZ_OV049811.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA7556989
            Sequence Read Archive: ERR4824536, ERR4824554
            Assembly: GCF_920103885.1
KEYWORDS    RefSeq.
SOURCE      Klebsiella pneumoniae
  ORGANISM  Klebsiella pneumoniae
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Klebsiella/Raoultella group; Klebsiella.
REFERENCE   1
  AUTHORS   Brisse,S. and Rodrigues,C.
  TITLE     Direct Submission
  JOURNAL   Submitted (19-NOV-2021) Institut Pasteur, Biodiversity &
            Epidemiology of Bacterial Pathogens, CNRS UMR3525, 25 rue Dr Roux,
            75724 Paris, France
COMMENT     ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 02/01/2024 04:09:12
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,765
            CDSs (total)                      :: 5,639
            Genes (coding)                    :: 5,420
            CDSs (with protein)               :: 5,420
            Genes (RNA)                       :: 126
            rRNAs                             :: 9, 8, 8 (5S, 16S, 23S)
            complete rRNAs                    :: 9, 8, 8 (5S, 16S, 23S)
            tRNAs                             :: 90
            ncRNAs                            :: 11
            Pseudo Genes (total)              :: 219
            CDSs (without protein)            :: 219
            Pseudo Genes (ambiguous residues) :: 0 of 219
            Pseudo Genes (frameshifted)       :: 114 of 219
            Pseudo Genes (incomplete)         :: 119 of 219
            Pseudo Genes (internal stop)      :: 28 of 219
            Pseudo Genes (multiple problems)  :: 38 of 219
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            OV049811.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..4715
                     /organism="Klebsiella pneumoniae"
                     /mol_type="genomic DNA"
                     /strain="DJ"
                     /isolate="DJ"
                     /isolation_source="urine"
                     /host="Homo sapiens"
                     /db_xref="taxon:573"
                     /plasmid="DJ_3_ColRNA"
                     /geo_loc_name="India"
                     /collection_date="2016"
     gene            complement(join(4188..4715,1..429))
                     /locus_tag="LRA90_RS26920"
     CDS             complement(join(4188..4715,1..429))
                     /locus_tag="LRA90_RS26920"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000280763.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_000280763.1"
                     /translation="MYLIEEALTSWLLNEYKKPVITKEEISLQIYLFYLKKEYNGERIY
                     QIRKNKAGPNEFEKNILKLLKSGVLSRVESNDKHHAYPHLIGGFYEVFFVKGNDGSPEN
                     DIVCSTYPYGYLSYLSAMDWHNITDKIPKIIHFTTCRSEQWKNKFYHDFQKDNPDIDEA
                     KQFMPRFPRNSEVNGIKIIVTQETNYVEPMKARNSPVRVSSIGKTFMDMTRRPDYCGGE
                     EHVLESFIEHGKKYAPLIIKEVDKLGRHIDKVRVGFILDRIIGVNNKKISEWKQEAGKY
                     RGSSKVLSPKSPFSPYFDEEWFISINVDMVKSYGKRN"
                     /name="hypothetical protein"
     gene            1505..1699
                     /locus_tag="LRA90_RS26925"
     CDS             1505..1699
                     /locus_tag="LRA90_RS26925"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001041627.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Rop family plasmid primer RNA-binding protein"
                     /protein_id="WP_001041633.1"
                     /translation="MNKQQQTALNMARFIKSQSLTLLEKLDALDADEQAAMCERLHELA
                     EELQNSIQVRFETESETGT"
                     /name="Rop family plasmid primer RNA-binding protein"
     gene            2353..2466
                     /locus_tag="LRA90_RS28875"
     CDS             2353..2466
                     /locus_tag="LRA90_RS28875"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005761324.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_001427893.1"
                     /translation="MHEPPVQPDCCALSGNYRLESNPVRHALTPLAAATGN"
                     /name="hypothetical protein"
     gene            complement(2688..3356)
                     /locus_tag="LRA90_RS26930"
     CDS             complement(2688..3356)
                     /locus_tag="LRA90_RS26930"
                     /EC_number="3.1.3.16"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016249761.1"
                     /GO_function="GO:0004722 - protein serine/threonine
                     phosphatase activity [Evidence IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PP2C family serine/threonine-protein phosphatase"
                     /protein_id="WP_223195384.1"
                     /translation="MGYIQMIAFSFSDIGNRCENLDLLSTINCQNDVFGMVIMDGYSCS
                     EWNMKILSGRLDKCVFSGDLNKDIIEPCKSVPVKAAVCFLFKNNTHLHIYNAGDCRVYN
                     KSGVLLTEDNSVAWKRLKENGIDNKKIPHLVCYCPDRNYLTSFVDFCSDEIIFNHSVFD
                     LNDENKEVILCTDGFWEHFNDGTVIDLMKDNPESNLAKFTKNIPGNAENHTVCYVRFPS
                     "
                     /name="PP2C family serine/threonine-protein phosphatase"
     gene            complement(3338..4204)
                     /locus_tag="LRA90_RS26935"
     CDS             complement(3338..4204)
                     /locus_tag="LRA90_RS26935"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000409995.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nucleotidyl transferase AbiEii/AbiGii toxin
                     family protein"
                     /protein_id="WP_000409995.1"
                     /translation="MEKEINNWIEESGGKYRLMRQAVHIILKSISIEESLNEMMVMKGG
                     TLLGVKHGSDRYTKDIDFSTEKKLSEIDLGDFFNRFNDSMDVAEAELGYGIKCKVQSHK
                     IQPNAQGTFPTVQINIAFCDRSNASAMKRLESNQSPSVINIDFSFNEKTYDFDFLSLDG
                     DDDNDSVKTYSLTDLMAEKYRSVLQQKVRERNREQDIYDINYLLGKYEFSRQDKYKILE
                     SLLKKSEGKQLDNLLNVKGIRDVEIIERSSQRYQDLSSTVKSLPLFEDAYEKVACFYES
                     LPWDIFK"
                     /name="nucleotidyl transferase AbiEii/AbiGii toxin family
                     protein"
     Typing          complement(991..1246)
                     /name="MOBF"
                     /typing="oriT"
                     /tool="MOB-suite"
                     /identity="96.512"
                     /coverage="89.0"
                     /evalue="1.21e-116"
     Typing          complement(1371..1469)
                     /name="MOB_unknown"
                     /typing="oriT"
                     /tool="MOB-suite"
                     /identity="100.0"
                     /coverage="100.0"
                     /evalue="6.22e-45"
     Typing          complement(1773..1857)
                     /name="MOBP"
                     /typing="oriT"
                     /tool="MOB-suite"
                     /identity="100.0"
                     /coverage="100.0"
                     /evalue="3.03e-37"
     Typing          1868..2425
                     /name="rep_cluster_2350"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="94.831"
                     /coverage="100.0"
                     /evalue="0.0"
ORIGIN
        1 ttcggaacga catgtcgtaa agtggattat cttgggtatt ttatctgtga tgttatgcca
       61 atccatagcg gataaatagg ataagtatcc atatggatac gtagagcaca ctatatcatt
      121 ttccggagaa ccatcgttac ctttaacaaa aaagacctca tagaaaccgc caattaaatg
      181 ggggtaagca tgatgcttat cgttactttc aactcttgat aaaacccctg actttaataa
      241 ttttaatata tttttttcaa attcattagg tcctgctttg ttctttctaa tttgatatat
      301 cctctcacca ttatattctt tttttaaata aaaaaggtaa atctgcaaag agatttcttc
      361 tttggttatg actggttttt tatattcatt caacaaccaa gacgttagcg cttcttcgat
      421 aagatacata ttcaaccttt tcggtttagt ctctaataga atatacgtcc taaggacgta
      481 tattctatta gagattgatt gtcaagaaaa aaataataac aaacaagcat ttgccatttt
      541 tatatttttg atatcctata aaataaatcc taaggattta ttttatagga taataagtag
      601 gaagtcaaga aaaagtttac ttatatcacc gttttcataa cacctcatgc gatcaattca
      661 gcgccggtta tagttcaaat ccatgattag gacatctgtt gctcataaac gatgagcgta
      721 aaagatcatt tttcagcgtc atttaccata acgtcgcatt acgcgcaccg ctaaaacgcg
      781 ctgaacgcga ttctgccgcg aacaccgcaa aaagagatgt tctccccggg gtaaaccgga
      841 aaaatgcgtc aggatcgctt tcagctcact gcatagctat gcatgaaagt gaatgacgat
      901 cggtttgggc gcatacagtg cccatgagac acattttcgg acattttcag ttcgtgaatc
      961 cctgactcat tgctacatat ctgaacagac acccctagca gcgcccccag gggcgtcctg
     1021 taaaaaaaca caccgcgccg ctagcagcac ccctaatata aaatgatgtt ttttatgaaa
     1081 atagtcagta ccacccctaa aaagcggtgt tggcgcagct acaacaccgc gccgacaccg
     1141 cttttttaaa tatcacaaag agagcaagaa gaactaattt gtcataactc tctatttata
     1201 aagaaaaatc agcaaaaaat tgtttttgcg tggggtgtgg gcatttcagg catgagaaca
     1261 gactcgcgtt tttccggagt atcagcggaa ttattgatta agaaacactc gacgcagagc
     1321 gaaattttat gcaacagcgg ctgcactgca cagggattat ttatcagttg atatgctgtg
     1381 ccatgatacg tcctaaaaaa acaggacagg atgtgcaatt gtaataccgt cgcccgcaac
     1441 gtcttacaat taccacctgg tcagggtcca cccgacaccc ggtactgacg gagaacaacg
     1501 gaaggtgaac aaacagcaac aaactgcgct gaatatggcg cgatttatca aaagccagag
     1561 cctgacactg cttgaaaaac tggatgctct ggatgccgac gaacaggcgg ccatgtgcga
     1621 acgactgcac gaactcgcgg aagaactcca gaacagcatc caggttcgct ttgagaccga
     1681 aagtgaaaca ggaacataac gaagctgacg gaggcgctca cggcttgtcc gcgagcgttt
     1741 tcggcagcag acaagcccgc cagggcgcgt cagcgggtgt cggggcgaag ccctgaccca
     1801 gtcacgtagc gatagcggag tgtatactgg cttaactatg cggcatcagt gcgaattgta
     1861 tgaaaagtgc cccatgccgg gtgtgaaatt ccgcacagat gcgtaaggag aaaatgcgcg
     1921 tccaggcgct tttccgcttc ctcgctcact gactcgctac gctcggtcgt tcggctgcgg
     1981 cgagcggtac tgacttacac aaaaacggca gcacggttat ccacagaatc aggggataag
     2041 gccggaaaga acatgtgagc aaaagaccaa gaacaggaag aaggccgcgc cgcaggcgtt
     2101 tttccatagg ctccgccccc ctgacgagca tcacagaaat cgacgctcaa gtcagaggtg
     2161 gcgaaacccg acaggactta aagataccag acgtttcccc ctggtggctc cctcgtgcgc
     2221 tctcctgttc cgaccctgcc gcttaccgga tacctgtccg cctttctccc ttcgggaagc
     2281 gtggcgcttt ctcatagctc acgctgttgg tatctcagtt cggtgtaggt cgttcgctcc
     2341 aagctgggct gtgtgcacga accccccgtt cagcccgact gctgcgcctt atccggtaac
     2401 tatcgtcttg agtccaaccc ggtaagacac gccttaacgc cactggcagc agccactggt
     2461 aactgattta gaggagttag tcttgaagtc atgcgccagt taaggctaaa ctgaaagaac
     2521 aggttttggt gactgcgctc ctccaagcca gttaccttgg ttcttcgagc cgcaaactct
     2581 ttgaacctaa gagaaaaccg ccccgcaaag gcggtttttt tcttttacag aaaagagatt
     2641 atctatatga cacgaagatc tcaatagctt cttcaaaaaa cacgaaatca agaagggaat
     2701 ctaacgtagc aaaccgtatg attctctgcg ttacccggga tatttttagt aaatttagcc
     2761 aagttagatt ctgggttatc tttcatgagg tcaataacag taccatcatt aaaatgctcc
     2821 caaaacccat cagtacataa aataacctct ttgttttcat catttaaatc aaaaactgaa
     2881 tgattgaaaa ttatctcatc agagcagaaa tcaacaaatg atgttagata atttctgtct
     2941 gggcaataac aaacgaggtg aggtattttt ttattatcga ttccattttc ctttaatctt
     3001 ttccaggcaa ccgagttatc ctctgttaga aggactccac ttttgttata tacacggcaa
     3061 tctcctgcgt tatatatatg gaggtgcgta ttatttttaa aaaggaaaca tactgcagcc
     3121 ttaacaggaa ctgacttgca tggttcaata atatctttat tcagatcacc agaaaacacg
     3181 cacttatcta acctaccaga gagaattttc atattccact cagagcagga atacccatcc
     3241 ataataacca ttccaaacac atcattttga caatttatcg tagataataa gtctaagttt
     3301 tcacatctgt taccaatatc actaaaactg aacgctatca tttgaatata tcccacggaa
     3361 gactttcata gaaacaggca actttttcat aagcatcttc aaaaagaggt aatgatttaa
     3421 cggtggatga taaatcctga tatcgctgac tggaacgctc gataatttct acatccctta
     3481 tacctttaac gtttaagaga ttatccaatt gtttaccttc actctttttt aaaagagact
     3541 ccagtatttt atacttatct tgccgagaaa actcatattt acctaaaaga taattgatat
     3601 catatatatc ttgctctcga tttctctctc taactttttg ttgcaaaacg gatcgatatt
     3661 tttcagccat caaatcagtt aagctgtagg tctttacgct atcattgtca tcatcaccat
     3721 ctaatgataa aaagtcaaaa tcatacgttt tttcgttaaa gctaaaatcg atatttatca
     3781 ctgaaggtga ttgattagat tcaagccttt tcattgcaga cgcattagaa cgatcgcaaa
     3841 aggctatatt tatctgtaca gttggaaatg ttccttgtgc attaggttga attttatgag
     3901 attgaacttt acatttaata ccatatccca attcagcctc agcaacatcc attgagtcat
     3961 taaacctatt gaaaaaatcc cccaagtcaa tttcagaaag ttttttttcg gtagaaaaat
     4021 caatatcctt tgtgtatcta tcactaccat gcttaacacc aagaagagtc cctcccttca
     4081 taaccatcat ttcattcaaa ctctcctcta tagaaataga tttaagtatt atatgtacag
     4141 cctggcgcat caacctgtac ttcccaccag actcttcgat ccaattatta atttcttttt
     4201 ccataagact taaccatatc aacattaata gaaataaacc attcttcatc aaagtaaggt
     4261 gagaatggac tctttggaga tagcactttc gaactacctc tgtatttacc cgcctcttgt
     4321 ttccattcgc ttattttttt attattaacc ccaataattc tatccaaaat gaatccaacc
     4381 cttaccttgt caatatgacg gccaagctta tcgacttcct ttataatcag aggtgcatat
     4441 tttttaccgt gctcaataaa tgattccaat acatgctcct caccaccaca gtaatcaggc
     4501 cgcctggtca tatccataaa ggtcttaccg atagatgata ccctgacagg ggaattacga
     4561 gccttcattg gctcaacata atttgtttct tgtgtaacga taatttttat tccattgacc
     4621 tcagaatttc ttggaaatct aggcatgaat tgtttggctt cgtctatatc aggattatcc
     4681 ttttgaaaat catgatagaa cttattcttc cactg
//
