LOCUS       NZ_OV049810             2056 bp    DNA     circular CON 01-FEB-2024
DEFINITION  Klebsiella pneumoniae strain DJ isolate DJ plasmid DJ_2_ColpVC,
            complete sequence.
ACCESSION   NZ_OV049810
VERSION     NZ_OV049810.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA7556989
            Sequence Read Archive: ERR4824536, ERR4824554
            Assembly: GCF_920103885.1
KEYWORDS    RefSeq.
SOURCE      Klebsiella pneumoniae
  ORGANISM  Klebsiella pneumoniae
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Klebsiella/Raoultella group; Klebsiella.
REFERENCE   1
  AUTHORS   Brisse,S. and Rodrigues,C.
  TITLE     Direct Submission
  JOURNAL   Submitted (19-NOV-2021) Institut Pasteur, Biodiversity &
            Epidemiology of Bacterial Pathogens, CNRS UMR3525, 25 rue Dr Roux,
            75724 Paris, France
COMMENT     ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 02/01/2024 04:09:12
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,765
            CDSs (total)                      :: 5,639
            Genes (coding)                    :: 5,420
            CDSs (with protein)               :: 5,420
            Genes (RNA)                       :: 126
            rRNAs                             :: 9, 8, 8 (5S, 16S, 23S)
            complete rRNAs                    :: 9, 8, 8 (5S, 16S, 23S)
            tRNAs                             :: 90
            ncRNAs                            :: 11
            Pseudo Genes (total)              :: 219
            CDSs (without protein)            :: 219
            Pseudo Genes (ambiguous residues) :: 0 of 219
            Pseudo Genes (frameshifted)       :: 114 of 219
            Pseudo Genes (incomplete)         :: 119 of 219
            Pseudo Genes (internal stop)      :: 28 of 219
            Pseudo Genes (multiple problems)  :: 38 of 219
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            OV049810.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..2056
                     /organism="Klebsiella pneumoniae"
                     /mol_type="genomic DNA"
                     /strain="DJ"
                     /isolate="DJ"
                     /isolation_source="urine"
                     /host="Homo sapiens"
                     /db_xref="taxon:573"
                     /plasmid="DJ_2_ColpVC"
                     /geo_loc_name="India"
                     /collection_date="2016"
     gene            complement(join(1728..2056,1..661))
                     /locus_tag="LRA90_RS26910"
     CDS             complement(join(1728..2056,1..661))
                     /locus_tag="LRA90_RS26910"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001529700.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein rep"
                     /protein_id="WP_023569045.1"
                     /translation="MKNPELQNLTDYSPSDAPWDAHRSVSDDVGGIYLLAAEYERYGAR
                     MASCGGLLRFGWSTLKETGETRLRLREAHFCRVRHCPVCQWRRSLMWQARFYQSLPRIV
                     ADYPDSRWMFLTLTVRNCAIGELGDTLSRMNTAFQRLKDRKEFRPVQGWIRTTEVTRGS
                     DGSAHPHFHTLMMVPPGMLNGKSYVKHARWVELWRECLRVSYDPNVDVRAVKPRKPKDG
                     ESLACATAELVRGAVAETLKYSTKPADMVADPEWFLELTRQTHKRRFVATGGALKDVLK
                     LDQETDADMVIGDDISEGDDDGSRIAFEWKTEVRKYRRSPTKDKTESE"
                     /name="protein rep"
     gene            complement(984..1175)
                     /locus_tag="LRA90_RS26915"
     CDS             complement(984..1175)
                     /locus_tag="LRA90_RS26915"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020324555.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_020324555.1"
                     /translation="MIVRLDNRLFEILDEMGAHVDREMFMAAYAQRKAEKENDPRHIRQ
                     RKLTRLAHDLMSESDPEL"
                     /name="hypothetical protein"
     Typing          1811..2000
                     /name="ColpVC"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="97.906"
                     /coverage="99.0"
                     /evalue="1.72e-88"
ORIGIN
        1 ccttcggctt ccggggtttc actgcccgga catcgacatt cggatcgtag ctgacccgaa
       61 ggcactcccg ccacagctca acccagcgcg catgtttgac gtaactcttc ccgttaagca
      121 tgccaggcgg aaccatcatc agtgtgtgga agtgcgggtg tgcgctgccg tcactgccgc
      181 gggtgacttc cgtggtgcgg atccatccct gaactggtct gaactctttg cgatccttca
      241 gccgctggaa agccgtgttc atccggctca gcgtatcgcc cagctccccg atcgcacagt
      301 tgcgcacggt cagggtcagg aacatccagc gggaatcggg gtaatccgcc acgatacgcg
      361 gcagggactg gtagaaacgg gcttgccaca tcagggagcg cctccactgg cagacaggac
      421 agtgccggac acggcagaaa tgcgcctcac gcagcctcag gcgcgtttct ccggtttctt
      481 tgagggtaga ccacccgaaa cgcagtaaac cgccgcagga ggccatacgc gccccgtagc
      541 gctcatattc ggccgcaagc aggtaaatcc ctcccacgtc gtcagaaacg cttctgtgag
      601 cgtcccaggg cgcatctgag ggggaatagt ccgtgaggtt ctggagttca gggtttttca
      661 tgcgcaccgt cccatactgg gcgatggctc atttgacgtg ttatcattgc cgtatcacct
      721 gtgttgtctg tcgcaaaata gaattcctac aggtggtcac acccccgaac gatggccgtc
      781 gttgcggggg tcgcttttaa cgcgaccact cccgacagaa taacttcaaa gtcattttca
      841 ggcaaatcac gctgaaaccc ttgaggcaca agggctgagg cttattttta acgccagagt
      901 tatcccttaa gtataaatac aaggatcgcg cgcatgaaaa tccggcgatt ttctgaccaa
      961 tttccctcgc gcgcacgcga ggctcacaat tcagggtccg attctgacat caaatcatga
     1021 gccaacctgg tcaatttccg ctgacggata tgccggggat cattttcctt ttcggccttc
     1081 cgctgtgcat aggccgccat gaacatttcc cgatccacat gcgcacccat ctcatcgaga
     1141 atctcaaaca gccggttatc cagtctgacg atcataccta ccccctcaaa aacgcctatc
     1201 aggtggttgc gctcactgcg tgatcacaac caccccctgt aagtattcta cgggtgctgt
     1261 cgtcaatcac taaatcggaa cccactggca agccagcggg accccgcgat ttagcgtttg
     1321 acgatttcgg gaacggcgaa cgctgacaga ttttaatctg gcggcgtgag gtgttggcag
     1381 ggtgtcgggg cgcagccctg acggatcgtt tttggtaccg acatcgtgat ggcggtactc
     1441 caaaaacaca tcttgtccgg tgtcagtttt tgtttttcgt gggcttgccc caccgcgcag
     1501 tttctcaccg aaggggagaa actactaagc gcgccttccg gaaaattacc ggaaggaaaa
     1561 cccaggttcg gaatccgaac tcagcaatcg agtgacgtca ctttgcggcg gcagccctat
     1621 cctgcatcgg agtaaaatca atcggacaag atgtgacttt ggtacaccgc caccaaggtg
     1681 acggatgccc aaagtcctca tggtcagggc gcagccccga caccccgtta ctctgattcg
     1741 gttttatctt tcgttggtga gcgacggtat tttctgacct cggttttcca ctcgaacgcg
     1801 atgcgtgaac cgtcatcgtc gccctcggaa atatcatccc cgatcaccat gtcggcgtcg
     1861 gtttcctgat cgagtttcaa tacgtctttg agtgcgccgc cggtcgccac aaagcggcgc
     1921 ttgtgcgtct ggcgggtcag ttcgaggaac cattcaggat cggcgaccat gtcggccggc
     1981 ttcgtggaat atttcagggt ctcggccacc gcgccgcgca ccagttcggc ggtcgcgcag
     2041 gccagcgatt cgccgt
//
