LOCUS       NZ_OU015716             1928 bp    DNA     circular CON 30-MAY-2024
DEFINITION  Enterococcus faecium isolate USZ_VRE32_P32 plasmid pl7, complete
            sequence.
ACCESSION   NZ_OU015716
VERSION     NZ_OU015716.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA8659956
            Assembly: GCF_907165365.1
KEYWORDS    RefSeq.
SOURCE      Enterococcus faecium
  ORGANISM  Enterococcus faecium
            Bacteria; Bacillota; Bacilli; Lactobacillales; Enterococcaceae;
            Enterococcus.
REFERENCE   1
  AUTHORS   Boumasmoud,M.
  TITLE     Direct Submission
  JOURNAL   Submitted (02-MAY-2021) UZH, Raemistrasse 100, Switzerland
COMMENT     ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_907165365.1-RS_2024_05_30
            Annotation Date                   :: 05/30/2024 03:49:26
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,280
            CDSs (total)                      :: 3,186
            Genes (coding)                    :: 3,079
            CDSs (with protein)               :: 3,079
            Genes (RNA)                       :: 94
            rRNAs                             :: 6, 6, 6 (5S, 16S, 23S)
            complete rRNAs                    :: 6, 6, 6 (5S, 16S, 23S)
            tRNAs                             :: 72
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 107
            CDSs (without protein)            :: 107
            Pseudo Genes (ambiguous residues) :: 0 of 107
            Pseudo Genes (frameshifted)       :: 37 of 107
            Pseudo Genes (incomplete)         :: 69 of 107
            Pseudo Genes (internal stop)      :: 21 of 107
            Pseudo Genes (multiple problems)  :: 16 of 107
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            OU015716.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1928
                     /organism="Enterococcus faecium"
                     /mol_type="genomic DNA"
                     /isolate="USZ_VRE32_P32"
                     /isolation_source="Inguinal/Rectal swab"
                     /host="Homo sapiens"
                     /db_xref="taxon:1352"
                     /plasmid="pl7"
                     /geo_loc_name="Switzerland"
                     /lat_lon="47.4 N 8.5 E"
                     /collection_date="2017"
     gene            join(1899..1928,1..>153)
                     /locus_tag="KKQ93_RS16255"
                     /pseudo=""
     CDS             join(1899..1928,1..>153)
                     /locus_tag="KKQ93_RS16255"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002313295.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo=""
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /name="hypothetical protein"
     gene            734..1699
                     /locus_tag="KKQ93_RS16260"
     CDS             734..1699
                     /locus_tag="KKQ93_RS16260"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002305967.1"
                     /GO_function="GO:0003677 - DNA binding [Evidence IEA];
                     GO:0003916 - DNA topoisomerase activity [Evidence IEA]"
                     /GO_process="GO:0006270 - DNA replication initiation
                     [Evidence IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="replication initiation factor domain-containing
                     protein"
                     /protein_id="WP_213313541.1"
                     /translation="MSKKGIIVNEWEKLNRISNRRLSVDDKVHPLKLSWSIDRITIVGK
                     LNDTIAYWTKNGVVFVDFEQLMRLNENQGYLKSVGTNGWQLFDQYGEDIAYIEMLKFHP
                     DKGRIDFNPNKIGEFLKGSMKQFIHDLFLDAHFSRADIACDILGVPDDFITQYRIVDPV
                     SFKPIYGRSGKLETAYWGSRASERQVRMYNKKLEQERKKQIVPKEIETWWRIEMQLRRG
                     KATDWHAMVRESLDSFASPHYLPGDVKPVDRIMIKGLNQDHSEWAYISRNLKYRLRKLL
                     KEESQNDELTNHLRETFKESANDLKIELDTWLLGLDVTEK"
                     /name="replication initiation factor domain-containing
                     protein"
     Typing          933..1699
                     /name="rep_cluster_1968"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="100.0"
                     /coverage="100.0"
                     /evalue="0.0"
ORIGIN
        1 tcaaagagta acagaaaggt ttacactctt tttattagcg acagcgcgaa ggaggggttt
       61 aacttggggt ttagtatttc gttcaaaaag ggaacaaaaa atacaagcat ttctcataat
      121 aatcgtgagt taactgatag ccaaaaaatc aatagtttgt ctggtagaaa ataattagca
      181 gatttacaag tgggaaataa aaagctgaaa gaagaaaatt gcatttcaaa ctacattttc
      241 tacaatagct ctaaaatggc atattttgcg ttctgagcgg ttttagcgtt tatttcgttt
      301 agttatcggc acaatcggtg aaacacgtta gaggagcgaa aatggagcct gtaaggcgac
      361 tggtagcgga acggtcgtgt tagattgtgt agccgatagc tgaacgaaat aaatgctggc
      421 agcgccattc tatttcggca ggaggaggct caaggggttc ggggaatgaa attccctgag
      481 gtctttttat tttttctaga ggagtgctat aatcaaagaa aatgagaaaa aagagtaaaa
      541 aaatagtcga gcagtgttga cgcactctcg acctttacgg aaactacttc acctagttcc
      601 gtaactcaag ttcattatac gaatattttt aggtttcttc aagctagaga tttttggatg
      661 tggattttta gagttacgtg aactctggaa attctttcca agaatctctt ttttcgttga
      721 ggaggagcta tttttgagta aaaaaggcat aatcgtaaat gagtgggaaa aacttaaccg
      781 tatttctaac aggcggttaa gtgttgacga taaggtacac cccctaaaat taagttggtc
      841 aatcgatcga attacaattg tcggaaaact gaatgatacc atagcttatt ggacgaaaaa
      901 tggagttgtg tttgtcgatt ttgagcaatt aatgcgtttg aatgaaaatc aagggtattt
      961 gaagtcggtt ggtacaaatg gttggcaatt atttgaccaa tatggagaag atatcgccta
     1021 tatcgaaatg ttaaaatttc accctgacaa aggtcgtatt gattttaatc caaataaaat
     1081 tggcgagttt ttaaaggggt cgatgaaaca attcattcat gatttgtttc tggatgcgca
     1141 tttctcacgt gcagatattg cttgcgatat tctcggtgtt cctgatgatt ttattaccca
     1201 gtatcgaatc gttgaccctg tgtcttttaa gccaatttat ggccgttctg gcaaattaga
     1261 aacagcgtac tggggtagtc gtgccagcga gcgacaagtg cggatgtaca acaaaaagct
     1321 tgaacaggaa cgaaaaaaac agattgtacc aaaagaaatc gaaacatggt ggcgtataga
     1381 aatgcagcta agacgtggca aagcaacaga ttggcatgcg atggttcggg aaagtttaga
     1441 tagctttgca agtcctcatt acttgcctgg agatgtaaaa cctgttgata gaattatgat
     1501 aaaagggctg aatcaagatc attcagagtg ggcgtatatt agcagaaatt tgaaatatag
     1561 attgcgcaaa ttgttgaaag aagaaagcca aaacgatgag ttgacgaatc atttacgaga
     1621 gacgtttaag gaatctgcaa acgacttgaa aatagaatta gacacgtggc ttttgggttt
     1681 ggacgtgaca gagaagtgat accgaataag aaaagtcaga tgagtgagag taaatttacg
     1741 tcaatgttta atgacgtgag tttacgataa gcgattattt tgcgtgaagc aaaataaagc
     1801 gtaaaaggag ttgagagcgt gacacgcttt cggctccttt tttcgttgtc acttgtgaca
     1861 gcgaataccc tcggagagca tttggaattg tgacagccat gtcacaatta ggaaaatgtt
     1921 actctttg
//
