LOCUS       NZ_OU015714             3304 bp    DNA     circular CON 30-MAY-2024
DEFINITION  Enterococcus faecium isolate USZ_VRE32_P32 plasmid pl5, complete
            sequence.
ACCESSION   NZ_OU015714
VERSION     NZ_OU015714.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA8659956
            Assembly: GCF_907165365.1
KEYWORDS    RefSeq.
SOURCE      Enterococcus faecium
  ORGANISM  Enterococcus faecium
            Bacteria; Bacillota; Bacilli; Lactobacillales; Enterococcaceae;
            Enterococcus.
REFERENCE   1
  AUTHORS   Boumasmoud,M.
  TITLE     Direct Submission
  JOURNAL   Submitted (02-MAY-2021) UZH, Raemistrasse 100, Switzerland
COMMENT     ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_907165365.1-RS_2024_05_30
            Annotation Date                   :: 05/30/2024 03:49:26
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,280
            CDSs (total)                      :: 3,186
            Genes (coding)                    :: 3,079
            CDSs (with protein)               :: 3,079
            Genes (RNA)                       :: 94
            rRNAs                             :: 6, 6, 6 (5S, 16S, 23S)
            complete rRNAs                    :: 6, 6, 6 (5S, 16S, 23S)
            tRNAs                             :: 72
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 107
            CDSs (without protein)            :: 107
            Pseudo Genes (ambiguous residues) :: 0 of 107
            Pseudo Genes (frameshifted)       :: 37 of 107
            Pseudo Genes (incomplete)         :: 69 of 107
            Pseudo Genes (internal stop)      :: 21 of 107
            Pseudo Genes (multiple problems)  :: 16 of 107
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            OU015714.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..3304
                     /organism="Enterococcus faecium"
                     /mol_type="genomic DNA"
                     /isolate="USZ_VRE32_P32"
                     /isolation_source="Inguinal/Rectal swab"
                     /host="Homo sapiens"
                     /db_xref="taxon:1352"
                     /plasmid="pl5"
                     /geo_loc_name="Switzerland"
                     /lat_lon="47.4 N 8.5 E"
                     /collection_date="2017"
     gene            join(2947..3304,1..59)
                     /locus_tag="KKQ93_RS16195"
     CDS             join(2947..3304,1..59)
                     /locus_tag="KKQ93_RS16195"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001232859.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_060806723.1"
                     /translation="MRKTSVQKHVTLYPSHVDVLDSIIEKNPDINNYSEAIRFLCMSYE
                     PDINTTTTSNQAKLNAMGKEISIMTEIIAEFADLYLKDTGVLIGTNSKVYQEVKEKIEA
                     KLNPSNRNRPKNHQKGTNKTVTSSNFDPTKFLKR"
                     /name="hypothetical protein"
     gene            complement(115..333)
                     /locus_tag="KKQ93_RS16200"
     CDS             complement(115..333)
                     /locus_tag="KKQ93_RS16200"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002410865.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_060806722.1"
                     /translation="MTKNVNDLFEEYYDNHNLDESRYSHFSKKQLVIEAEYMHDALQNI
                     LKYLDDGGTDLNAIRGEVMDGIYESRI"
                     /name="hypothetical protein"
     gene            complement(336..1076)
                     /locus_tag="KKQ93_RS16205"
     CDS             complement(336..1076)
                     /locus_tag="KKQ93_RS16205"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002328005.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="replication protein"
                     /protein_id="WP_060806721.1"
                     /translation="MTVRITKARHFSFLLYPDSIPNDWKEKLESLGISMAVSPLHDMDE
                     KKDKEKWTIDDVVRNGKHYKKPHYHVIYIARNPVTIESIRKKIKRKLGNNSVAHVEIID
                     SIKGAYEYLTHESKDAKAKNKHIYDKKDILYINDFDIDRYITLDESQKRELRKTLTNII
                     DMYGVVNAKELRAFLNWRGTEFGVTNLGDVEDVLSANGSLFRFYFDGNYQNGFRPQYAK
                     RINSETGEIISGVDELISKTEEGE"
                     /name="replication protein"
     gene            complement(1142..1282)
                     /locus_tag="KKQ93_RS16210"
     CDS             complement(1142..1282)
                     /locus_tag="KKQ93_RS16210"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016373449.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CopG family transcriptional regulator"
                     /protein_id="WP_060806720.1"
                     /translation="MSKKKRLTITLSEQVLEYLDEVAKKKGLSKSALITIALEEYKKGQ
                     K"
                     /name="CopG family transcriptional regulator"
     gene            complement(1768..1947)
                     /locus_tag="KKQ93_RS16215"
     CDS             complement(1768..1947)
                     /locus_tag="KKQ93_RS16215"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_060806718.1"
                     /translation="MEKDIYKQLTQQIQKEKEKGLLDHLDELELKADEINKNRMSAKEK
                     GIKLKDSSLQSDKS"
                     /name="hypothetical protein"
     gene            complement(2070..2294)
                     /locus_tag="KKQ93_RS16220"
     CDS             complement(2070..2294)
                     /locus_tag="KKQ93_RS16220"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000410576.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_000410576.1"
                     /translation="MEKFPYEYFQNLEKLEQAIQAIKFDLTDEKLLEYKNMTPERKRSL
                     EKLMQLVNEDGGISDAAFDAWSEFHGEYN"
                     /name="hypothetical protein"
     gene            2660..2944
                     /locus_tag="KKQ93_RS16225"
     CDS             2660..2944
                     /locus_tag="KKQ93_RS16225"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002337999.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_000353844.1"
                     /translation="MDILVRNIDPKFVATIDKRCQELTNKTGEKWSRNKYLKVLIESDF
                     DRQLTTYKKDQFDLLLDKFIAIQTENTQILSEYVYTNNQIIEMLIGGMI"
                     /name="hypothetical protein"
ORIGIN
        1 gaacaaacaa aacagtcact tctagcaatt tcgacccaac taaatttcta aaacgataaa
       61 aaaacagata ggagttattc ctatctgttt tttatttccc aatattctat tttttcatat
      121 cctactttca tatatgccgt ccatgacttc tccacgaatc gcattcaaat ccgttccacc
      181 gtcgtcgaga tatttcaaaa tattttgcaa agcatcatgc atatactcag cttcaatcac
      241 caattgcttt ttactaaaat gactataccg actttcatct aaattatgat tatcataata
      301 ttcctcaaac aaatcgttta cgttttttgt cattcttatt ctccttcttc agttttactt
      361 attaattcgt caactccact tataatttcc ccagtttcag aatttattct ttttgcatat
      421 tgtggtctaa acccattttg atagttccca tcaaaataaa atctaaacag actaccattt
      481 gcactcaaaa catcttctac atctcctaag ttggttacac caaattctgt acctctccaa
      541 ttaagaaatg ctctaagttc tttcgcatta accacaccgt acatatcaat aatatttgtc
      601 aaagtttttc ttaactctcg tttttggctt tcatcaaggg tgatataacg atcaatatca
      661 aaatcattaa tatacaaaat atctttttta tcgtaaatat gtttgttctt cgctttcgcg
      721 tcttttgact catgagtcaa atactcataa gcacccttaa tggaatcaat tatttcaaca
      781 tgagcaaccg aattatttcc caattttctc ttgatttttt ttcgaatact ttctatcgtt
      841 actggatttc tagcaatata tataacatga taatgcggtt ttttatagtg cttaccattt
      901 ctaacaacat catcaattgt ccacttttct ttatcctttt tttcatccat atcgtgtaaa
      961 ggactaacag ccattgaaat acctaaactc tctaattttt ccttccaatc atttggaatc
     1021 gaatcaggat ataacaaaaa actaaaatgt ctagctttag taattctaac agtcatgata
     1081 taatcacctt atcaattaat gagtgagcgg tcttttagtc gggagcgctc tttttttatg
     1141 ctcatttttg ccctttcttg tattcttcta acgctattgt tattaatgca gatttggata
     1201 aacccttttt tttagctact tcgtctagat attctaaaac ttgttctgac aacgttattg
     1261 tcaaacgttt cttcttactc atgtcattct ccttttcatt atttatcttc ttaaaaagaa
     1321 taccacatat tacgcattaa atgcaactaa aagcgtattt ttttaaaaac ggcggtcgaa
     1381 acggcggtca aatggcggtc gaaaaaaaag gctctatcca ttggtacagt aaggataaag
     1441 cactttttgg cacaaaaatt ggcactcggc acactatggg gggtcgtagt agccccccag
     1501 attttccaaa ttccaaattt tttccaaaaa ttttccagcg ctaccgctcg gcaaatcaag
     1561 accgtacctt tttgaaaaaa ggcaccccaa aaactttcca ctcgccgtta aggcgtcaag
     1621 aacgttccct atggtcacct tcttgtgttt ccagcttttg ggttttgttt atagccgtca
     1681 actccttaaa gcctcaaaga gacgctaaga gggcttatta gcctctctaa gcgtctctaa
     1741 ttcgatttac cgttgaccgc acgttatcta gcttttatcg ctttgcaacg acgaatcttt
     1801 aagttttatg cctttttctt ttgctgacat tctgttttta ttgatttcat cagcttttag
     1861 ttctaattca tctaaatgat ctagcaagcc tttttctttt tccttttgaa tttgttgggt
     1921 caattgttta taaatatctt tttccatccc catcacctcc ttaaaagcta ttattattcg
     1981 atttaagacg ttttatttag tttttggtgt atttcattgg tccaagctaa aaaactctta
     2041 gaagcgattt tagagccatt taaacccact taattatatt ctccatgaaa ttcgctccat
     2101 gcgtcaaaag ctgcgtctga aattccgccg tcttcgttca ctagttgcat taatttttcc
     2161 aacgatcgtt ttctttcggg tgtcatattt ttatattcca acaatttttc gtctgttaaa
     2221 tcgaacttga ttgcttgaat tgcttgctct aatttttcta agttttgaaa atattcgtaa
     2281 ggaaattttt ccattttttc tttctccagt ctcacaattt ttctagaaat aaaatcactt
     2341 ctttgccgtc tatactctca aaaaaaatgt cgtttgaaaa actaaataaa tttttgatcg
     2401 tgcattttta aatttggtta tcgattacac gtgcagcact cccccccgaa ttttaaagag
     2461 cataaggaaa cgtgtaccca ctttctaaaa aaagtgggta gataggctgt gcctatcacg
     2521 tttctcagaa aaaaatttga tatcactttt tcgccatcgt gggtagctta tgtatagcat
     2581 tttggcaaaa aacagctata caaatatagt atttgtatgg tatacataaa ttatacataa
     2641 ttgcaaaagg agatttttta tggacatttt agttcggaat attgatccaa agtttgttgc
     2701 aacaatagac aaacgttgcc aagaactcac gaataaaaca ggagaaaaat ggagtcgaaa
     2761 taaatatcta aaagttttaa tcgaaagtga ttttgaccgt caacttacga cttacaaaaa
     2821 agaccaattc gatttattgc tcgataaatt tattgctatc caaacagaaa atactcaaat
     2881 attaagcgag tatgtctaca caaataatca aatcattgaa atgcttatcg gaggaatgat
     2941 ataaccatga gaaaaacttc tgtccaaaaa catgttactt tgtaccctag tcatgttgac
     3001 gttttagatt ccatcatcga aaaaaatcca gatatcaata actactcgga agccattcgc
     3061 tttttatgta tgagttatga acccgatatc aacacgacca ctaccagcaa tcaggcaaaa
     3121 ctaaatgcta tgggaaaaga aatttccatc atgactgaaa tcatcgcaga attcgctgat
     3181 ttatatctaa aagatacagg cgttcttatt ggcacaaatt ctaaagtata tcaagaagtg
     3241 aaagaaaaaa tcgaagctaa actaaatcca tcaaatcgaa atcgaccaaa gaatcatcaa
     3301 aaag
//
