LOCUS       NZ_OU015344             2089 bp    DNA     circular CON 23-MAR-2024
DEFINITION  Salmonella enterica subsp. enterica serovar Typhimurium strain
            AUSMDU00007171 isolate AUSMDU00007171 plasmid P02, complete
            sequence.
ACCESSION   NZ_OU015344
VERSION     NZ_OU015344.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA8520470
            Assembly: GCF_907163245.1
KEYWORDS    RefSeq.
SOURCE      Salmonella enterica subsp. enterica serovar Typhimurium (Salmonella
            typhimurium)
  ORGANISM  Salmonella enterica subsp. enterica serovar Typhimurium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1
  AUTHORS   Ashcroft,M., Baines L,S., Williamson,D. and Ingle,D.
  TITLE     Direct Submission
  JOURNAL   Submitted (09-APR-2021) UNIVERSITY OF MELBOURNE, Williamson
            Laboratory, Doherty Institute, Australia
COMMENT     ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_907163245.1-RS_2024_03_23
            Annotation Date                   :: 03/23/2024 02:22:29
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,916
            CDSs (total)                      :: 4,793
            Genes (coding)                    :: 4,687
            CDSs (with protein)               :: 4,687
            Genes (RNA)                       :: 123
            rRNAs                             :: 8, 7, 7 (5S, 16S, 23S)
            complete rRNAs                    :: 8, 7, 7 (5S, 16S, 23S)
            tRNAs                             :: 86
            ncRNAs                            :: 15
            Pseudo Genes (total)              :: 106
            CDSs (without protein)            :: 106
            Pseudo Genes (ambiguous residues) :: 0 of 106
            Pseudo Genes (frameshifted)       :: 31 of 106
            Pseudo Genes (incomplete)         :: 85 of 106
            Pseudo Genes (internal stop)      :: 18 of 106
            Pseudo Genes (multiple problems)  :: 26 of 106
            Pseudo Genes (short protein)      :: 1 of 106
            CRISPR Arrays                     :: 3
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            OU015344.1.
            Complete genome of Salmonella enterica subsp. enterica serovar
            Typhimurium AUSMDU00007171.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..2089
                     /organism="Salmonella enterica subsp. enterica serovar
                     Typhimurium"
                     /mol_type="genomic DNA"
                     /strain="AUSMDU00007171"
                     /serovar="Typhimurium"
                     /isolate="AUSMDU00007171"
                     /isolation_source="feces"
                     /host="Homo sapiens"
                     /sub_species="enterica"
                     /db_xref="taxon:90371"
                     /plasmid="P02"
                     /geo_loc_name="Australia"
                     /collection_date="2017"
     gene            423..1388
                     /locus_tag="KKQ83_RS24435"
     CDS             423..1388
                     /locus_tag="KKQ83_RS24435"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012421200.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein rep"
                     /protein_id="WP_001287824.1"
                     /translation="MSEDKFLSDYSPRDAVWDTQRTLTDSVGGIYQTAAEFERYALRMA
                     SCSGLLRFGWSTIMETGETRLRLRSAQFCRVRHCPVCQWRRTLMWQARFYQALPKIVVD
                     YPSSRWLFLTLTVRNCEIGELGTVLTAMNAAFKRMEKRKELSPVQGWIRATEVTRGKDG
                     SAHPHFHCLLMVQPSWFKGKNYVKHERWVELWRDCLRVNYEPNIDIRAVKTKTGEVVAN
                     VAEQLQSAVAETLKYSVKPEDMANDPEWFLELTRQLHKRRFISTGGALKNVLQLDRETN
                     EDLVIADDVGDGTDDGKRTAFVWDSGKRRYKRAPEKDKSD"
                     /name="protein rep"
     gene            1392..1658
                     /locus_tag="KKQ83_RS24440"
     CDS             1392..1658
                     /locus_tag="KKQ83_RS24440"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001024536.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_001024536.1"
                     /translation="MNINIEYLNGNKTIGLFFLRSEAVIPDRFKNLILLIDGLSFGTFG
                     FHPHEGFEDELILYIQKTNERVKTLFVKIDLNGIKFGFLRTHS"
                     /name="hypothetical protein"
     Typing          817..1048
                     /name="Col(BS512)"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="100.0"
                     /coverage="100.0"
                     /evalue="2.05e-118"
ORIGIN
        1 tgaggccatc cacctgtaag acagggtttt gtttttatcc cctgttttgg tgatcgggtg
       61 tgtggaaaag gttggggtaa gtcgttcggg ggtgcttgtt ttggggggtt aaaattgcgg
      121 ttatttttta cgcaattctc gcgcgtgatc cttgtatata tacttaaggg ataaatggcg
      181 gatatgaaat agtggtttag cccagtaatg acgaggcttt gagtgggttt tgacaggtca
      241 aagaaaatgg agcagaattg aggcgttttt aatcggcgtt ggggagtgcg tcaacactcc
      301 ccaacatttc gaatgtgtca cctcagcggc aaactctggt gacatgtact ggctcgcaat
      361 gcacaggtac gtgatgaata taccacatca aatcacagcc tgcccagatc ggagcaggct
      421 taatgtcaga agataaattc ctttcggact acagcccccg tgatgcagtt tgggataccc
      481 agcgcacgct taccgattct gtcgggggta tctaccagac tgctgctgaa ttcgagcgct
      541 atgcactccg tatggcctcc tgtagcggtt tgttacgttt tggttggtct accatcatgg
      601 aaaccggaga aacgcgccta cggcttcgta gtgcgcaatt ttgccgtgtc cgtcattgcc
      661 ctgtctgcca gtggagaaga accctcatgt ggcaagcccg tttttatcag gctctaccga
      721 aaatcgttgt ggattacccg tcttcccgat ggttgtttct gacgttaact gtcaggaact
      781 gcgagatagg tgaacttgga acagtcctta cagcaatgaa tgcggcgttt aagcgaatgg
      841 aaaagcgaaa ggagctatca cctgttcagg ggtggatcag ggctacggag gtgacgcgag
      901 gtaaggatgg cagcgcacat ccgcattttc actgtctgct gatggtgcaa ccttcttggt
      961 ttaaagggaa gaactacgtt aagcacgaac gttgggtaga actctggcgc gattgcttgc
     1021 gggtgaacta tgagccgaat atcgatattc gggcagtaaa aactaagaca ggtgaggttg
     1081 tggccaacgt tgccgagcaa ctgcaaagcg cggttgctga aacgctgaaa tactccgtta
     1141 aaccggaaga tatggcaaac gatcctgagt ggtttcttga gctgacgcgg cagcttcaca
     1201 agcgccgttt tatctcgacc ggtggggcgc taaaaaacgt cctccagttg gatcgagaaa
     1261 ccaatgagga tcttgtcatt gccgacgatg taggggatgg cactgatgac gggaagcgga
     1321 cggcgtttgt ctgggattca ggtaaacggc gttacaaacg cgcccctgag aaggataaat
     1381 cggattaacg tatgaatatt aatattgaat acctgaatgg aaataagact attggtttat
     1441 tttttttaag aagtgaagcg gtgattcctg acaggtttaa aaaccttatt ttgcttattg
     1501 atggattaag ttttggcaca tttggttttc atccgcacga aggttttgag gatgaattaa
     1561 ttttatatat tcagaaaaca aacgagaggg taaaaactct ttttgtgaaa atagatttaa
     1621 acggtatcaa gtttggattt ttaagaacgc attcttagtt ctggaaaaga gccagcggca
     1681 ggctgaggtg ataggtacga gattgcatgc aatctctagt gctctgtcta tcctgcatta
     1741 tcctcagcat tatcctcagc cttgccaact cgacaccaat gcaggataga caatccgatg
     1801 tcaaatgtta acactctgcg agtggtacat tttccccgga ttatcgtcct gagcctgccg
     1861 ctggctctct ttctaccgcc tcgctttgct cgttgctcaa cgcctcacag acacggatta
     1921 aaatccgcat ccgttcaccg ttttttaaag tccgttaaaa gcatgatgcc atctccgaga
     1981 gttaatctcg tcaaatgcta aatcgtgggg gtcccctttg gggttccgat ttagtgattg
     2041 acgacaccac cgattaaaaa acttatgcgg ggtggatggt ttcacgaag
//
