LOCUS       NZ_OU015343             4251 bp    DNA     circular CON 23-MAR-2024
DEFINITION  Salmonella enterica subsp. enterica serovar Typhimurium strain
            AUSMDU00007171 isolate AUSMDU00007171 plasmid P01, complete
            sequence.
ACCESSION   NZ_OU015343
VERSION     NZ_OU015343.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA8520470
            Assembly: GCF_907163245.1
KEYWORDS    RefSeq.
SOURCE      Salmonella enterica subsp. enterica serovar Typhimurium (Salmonella
            typhimurium)
  ORGANISM  Salmonella enterica subsp. enterica serovar Typhimurium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1
  AUTHORS   Ashcroft,M., Baines L,S., Williamson,D. and Ingle,D.
  TITLE     Direct Submission
  JOURNAL   Submitted (09-APR-2021) UNIVERSITY OF MELBOURNE, Williamson
            Laboratory, Doherty Institute, Australia
COMMENT     ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_907163245.1-RS_2024_03_23
            Annotation Date                   :: 03/23/2024 02:22:29
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,916
            CDSs (total)                      :: 4,793
            Genes (coding)                    :: 4,687
            CDSs (with protein)               :: 4,687
            Genes (RNA)                       :: 123
            rRNAs                             :: 8, 7, 7 (5S, 16S, 23S)
            complete rRNAs                    :: 8, 7, 7 (5S, 16S, 23S)
            tRNAs                             :: 86
            ncRNAs                            :: 15
            Pseudo Genes (total)              :: 106
            CDSs (without protein)            :: 106
            Pseudo Genes (ambiguous residues) :: 0 of 106
            Pseudo Genes (frameshifted)       :: 31 of 106
            Pseudo Genes (incomplete)         :: 85 of 106
            Pseudo Genes (internal stop)      :: 18 of 106
            Pseudo Genes (multiple problems)  :: 26 of 106
            Pseudo Genes (short protein)      :: 1 of 106
            CRISPR Arrays                     :: 3
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            OU015343.1.
            Complete genome of Salmonella enterica subsp. enterica serovar
            Typhimurium AUSMDU00007171.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..4251
                     /organism="Salmonella enterica subsp. enterica serovar
                     Typhimurium"
                     /mol_type="genomic DNA"
                     /strain="AUSMDU00007171"
                     /serovar="Typhimurium"
                     /isolate="AUSMDU00007171"
                     /isolation_source="feces"
                     /host="Homo sapiens"
                     /sub_species="enterica"
                     /db_xref="taxon:90371"
                     /plasmid="P01"
                     /geo_loc_name="Australia"
                     /collection_date="2017"
     gene            join(4071..4251,1..317)
                     /locus_tag="KKQ83_RS24405"
     CDS             join(4071..4251,1..317)
                     /locus_tag="KKQ83_RS24405"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="MbeB family mobilization protein"
                     /protein_id="WP_143549827.1"
                     /translation="MNSLLTLAKDLEQKSKAQQQTTGEMLKAAFSEHEKSVRAELNESE
                     KRISAAILDHDRKLSSAMSQRTKGMLRMVSQTWLTIVLVSALLIASSAGILWWQGQQML
                     DNYTSIREQKDALEKLNARTWGVRYQEDNQGRFLVLPEGVKADTNWTFDNGRKNGIRLV
                     QE"
                     /name="MbeB family mobilization protein"
     gene            324..539
                     /locus_tag="KKQ83_RS24410"
     CDS             324..539
                     /locus_tag="KKQ83_RS24410"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000137421.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MbeD family mobilization/exclusion protein"
                     /protein_id="WP_063617430.1"
                     /translation="MTELEKQLLSALEQLQQDYSKRLDEWENAFAEWRTMSGLMQRENA
                     ALSERVTGLSRQVQSLSEQLRRLSNG"
                     /name="MbeD family mobilization/exclusion protein"
     gene            complement(906..1403)
                     /locus_tag="KKQ83_RS24415"
     CDS             complement(906..1403)
                     /locus_tag="KKQ83_RS24415"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019842774.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_084567316.1"
                     /translation="MKKQILALALLSLPLIGMAKDSGYGNTEWGMTPNQVVAAQKGKAH
                     LIPPQKYKDQWGKVSIEDVNIGSGIYTVTFIFDASDKLVQTNVASKEKKNEGIANDQFN
                     LLNQLLTQKYGKPQFVSDEKATWKTDATTIELNKMIISGIMAQTLVRYIPNKTVISDTS
                     NL"
                     /name="hypothetical protein"
     gene            complement(1413..2000)
                     /locus_tag="KKQ83_RS24420"
     CDS             complement(1413..2000)
                     /locus_tag="KKQ83_RS24420"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_059337246.1"
                     /translation="MIRKIFFASAIVVAISGCTAMDKLAGMGVVSQQTSTFDNSTVIEV
                     SPNSLYDPNSTWGTPLQLGAIWSSAYPDEAGLILSYNSNVSSGNAAYLGLTGIDINVDG
                     KISSYKAQQQTNLSSSSYNSVSKTIYTSSKNTIVIPYKLLESMVSAKNCRIRIHTSQGN
                     QDIDFSAQSIPGGKATAIVSIKEFLAKVERFK"
                     /name="hypothetical protein"
     gene            complement(2315..2428)
                     /locus_tag="KKQ83_RS24770"
     CDS             complement(2315..2428)
                     /locus_tag="KKQ83_RS24770"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001354639.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_059446996.1"
                     /translation="MHEPPVQSDRCALSGNYHLESNPERHDKAPLAAATGN"
                     /name="hypothetical protein"
     gene            3070..3393
                     /locus_tag="KKQ83_RS24425"
     CDS             3070..3393
                     /locus_tag="KKQ83_RS24425"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000957083.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MobC family plasmid mobilization relaxosome
                     protein"
                     /protein_id="WP_179133778.1"
                     /translation="MLTMWVTEDEHRRLLERCDGKQLAAWMRQTCLDEKPARAGKLPSI
                     SPALLRQLAGMGNNLNQIARQVNAGGGSGHDRVQVVAALMAIDAGLERLRQAVLEKGAD
                     DDR"
                     /name="MobC family plasmid mobilization relaxosome protein"
     Typing          2783..2961
                     /name="MOB_unknown"
                     /typing="oriT"
                     /tool="MOB-suite"
                     /identity="89.011"
                     /coverage="83.0"
                     /evalue="3.460000000000001e-56"
     Typing          complement(2316..2807)
                     /name="ColRNAI_rep_cluster_1987"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="91.182"
                     /coverage="94.0"
                     /evalue="0.0"
     Typing          3..643
                     /name="MOBP"
                     /typing="relaxase"
                     /tool="MOB-suite"
                     /identity="88.318"
                     /coverage="99.0"
                     /evalue="7.77e-114"
     Typing          3384..4249
                     /name="MOBP"
                     /typing="relaxase"
                     /tool="MOB-suite"
                     /identity="97.232"
                     /coverage="99.0"
                     /evalue="0.0"
ORIGIN
        1 cagccatgag ccagcgcacg aaagggatgc tgcggatggt cagccagacg tggctgacca
       61 tcgtcctggt ctccgcgctg ctgatagcct cgagcgcggg cattctgtgg tggcaggggc
      121 agcagatgct cgacaattac acgagcatcc gggagcagaa ggacgcgctg gagaagctga
      181 acgcgcggac gtggggcgtg aggtatcagg aagacaacca ggggcgtttt ctggtgctgc
      241 cggaaggcgt gaaagcggac acgaactgga cgttcgacaa cggcaggaag aacggcatca
      301 gactggtgca ggagtagagc agcatgacgg agctggaaaa acagttgctg agcgcattag
      361 agcagctaca gcaggactac tcgaaaaggc tggacgagtg ggagaacgcc ttcgcggaat
      421 ggcggacgat gtctgggctt atgcaacggg agaacgcggc gctgagcgag cgcgtcacgg
      481 gcttgagcag gcaggtgcag agtttgagcg agcagctgcg ccggttgtcg aacggctgaa
      541 tgccgtcgag ctgcatcagc agcaggagcg cgcggcgcag catcagaaag cgctggagct
      601 ggagcgatcg cagcggcagc ggacgtataa cggcccgtcg ctgtgataac cggataaaac
      661 ggggctttcg gcgggtatct gcgctgaaaa cctgagccat tcacccggct gcatggctat
      721 gcagtccggg gaaatttacc ggacgcaaac ggggcggttt accgggcgct ttgctgcggg
      781 ttttaccaag caggcaccgt attcacgccg aacctgcccg gagcggtgcg ggcaagagat
      841 gttatgttca atctcccacc tcagatatag aaacaggaga gagacactca gtgaggctac
      901 aattattaca ggttagacgt gtcagaaatc acggtcttat taggaatgta gcgaactagt
      961 gtttgagcca taattccgga gatgatcatc ttatttagct caattgttgt agcatcagtt
     1021 ttccatgttg ctttttcatc acttacaaac tgtggtttgc cgtacttctg tgtaagtaat
     1081 tgatttaata agttaaattg gtcgttcgct attccctcgt ttttcttttc tttgctggca
     1141 acgttggttt ggactaattt atctgatgcg tcaaaaataa acgtaactgt atatattcca
     1201 ctacctatat tcacgtcttc aatgctcact tttccccatt ggtctttata cttttgaggg
     1261 gggattaaat gagcttttcc tttctgggct gcaacgacct gatttggggt cataccccat
     1321 tcggtattgc cataaccaga gtcctttgcc atgccaatca gtggcagtga tagcaaagcg
     1381 agtgcaagaa tctgcttctt catgacgcct ccttatttaa aacgttcgac tttggccagg
     1441 aactctttaa tggaaacgat cgctgtcgct ttacctccgg ggatactttg tgctgagaag
     1501 tcgatgtctt gatttccttg gcttgtgtgt atgcgaatgc ggcagttttt agctgatacc
     1561 atgctctcca gcaatttata cgggataacg atagtattct tgctagaggt atagatcgtc
     1621 ttggatacgg agttatatga gctgctgctt agattagttt gttgctgtgc tttatagctg
     1681 gatattttac catcaacatt tatatcaatc cccgtcaaac ctaagtatgc ggcatttccg
     1741 ctagatacat tcgagttgta ggaaaggatt agtccagcct catctggata ggcactagac
     1801 catatcgcgc ccaactgaag tggtgttccc caagtgctgt taggatcgta tagcgaattt
     1861 ggagatacct ctatgacagt cgagttatca aaggttgatg tttgctgaga aacaacaccc
     1921 attcccgcca atttatccat tgctgtacag ccagagatcg ctactacgat cgcagaagca
     1981 aaaaaaatct tccttatcat ttcgttatcc tatttttttc tttttaacag agactgaaaa
     2041 aaacatcgta ttcccgaaac cattttgcac acgatattct tttttaaaag gattttgaaa
     2101 ggatgcgggc agatcttctt gagatcctta agcgagagtc gtaatctctt gaccacgaaa
     2161 cgaaaaaacc gccctgcaag gcggtttttc gaaggttctc agagctacca actctttgaa
     2221 ccgaggtaac tggcttggag gagcgcagtc accaaaactt gtcctttcag tttagcctta
     2281 accggcgcat aacttcaaga ctaactcctc taaatcagtt accagtggct gctgccagtg
     2341 gcgctttgtc gtgtctttcc gggttggact caagatgata gttaccggac aaggcgcagc
     2401 ggtcggactg aacggggggt tcgtgcatac agtccagctt ggagcgaact gcctacccgg
     2461 aactgagtgt caggcgtgga atgagataaa cgcggccata acagcggaat gacaccggta
     2521 aaccgaaagg caggaacagg agagcgcacg agggagctac cagggggaaa cgcctgggat
     2581 ctttatagtc ctgtcgggtt tcgccgccac tgatttgagc gtcagatttc gtgatgcttg
     2641 tcaggggggc ggagcctatg gaaaaacggc agcgccgtat cctttttccg gcctttcctg
     2701 acttgagtgc catctcttta tcttgtcatt cgtgagcagg taacgcccgc cgcagcctca
     2761 cggcaggagc gtagcgaccg agtgagcgag gaggcgtcat gtcaccgtta cctgcatttt
     2821 gcacttacgc cctatagccg cattttccct tgcaacatga ataacttccc tgaattacca
     2881 ctccgatcta acatattcag ccagtataca ctccgctagc gctacgtgac tggttcaggg
     2941 ctgcgccccg aaacccgcta aaagccactg acgcgcctgc ggcttgtcca acaccacgcc
     3001 gttcgggaaa aaatttcccg cccgtcccgg cgttatcagg aggacagatt ggcagacaaa
     3061 cgcagcaaaa tgctcacgat gtgggtaacg gaagacgagc accggcgtct gctggagcgc
     3121 tgcgacggta agcagctcgc agcctggatg cggcagacgt gtctggacga aaagccggct
     3181 cgcgccggca aacttccctc gatctcgccg gcgctgcttc ggcagcttgc cggcatgggt
     3241 aacaacctca atcagattgc caggcaggtt aacgccggtg gcggcagcgg gcacgaccgc
     3301 gtgcaggtgg tcgccgcgct gatggccatc gatgccggac tcgaacggct tcgccaggca
     3361 gtgctggaaa agggggcaga cgatgatcgt taagtttcat cccagagggc gcggcggcgg
     3421 cgccggtccg gtggattatc tgctgggtaa agaccggcag cgcgacggcg ccagcgttct
     3481 gcaggggaag ccggaggaag tccgggagct tattgacgcc tcgccctacg ccaaaaagta
     3541 cacctccggc gtgctgtcct ttgcggaaca ggatttgccg cccggccagc gtgaaaagct
     3601 gatggcgagc ttcgagcggg ttctgatgcc cgggctcgac aaagatcagt acagcgtgct
     3661 gtgggttgag caccaggaca aagggcggct ggagctgaac ttcctcatcc cgaacacgga
     3721 gctgctgacc ggcaaacggc tccagccgta ttacgatcgc gccgaccgtc cgcgcatcga
     3781 cgcctggcag accatagtga acggcaggct ggggctgcac gacccgaacg cgccggagaa
     3841 ccggcgggcg ctggtcacgc cgtccgcgct gccggaagcg aagcaggaag ccgcccaggt
     3901 gattacgcgc ggcctgcttg cccttgcctc agccggggag ctgaaaacgc gccaggacgt
     3961 caccgaggcg ctggaaaacg caggtttcga ggtggtgcgc accacgaaaa gcagcatcag
     4021 cattgccgac ccggacgggg ggcgaaacat ccgactcagg ggagccatct atgaacagtc
     4081 ttttaacgct ggcgaaggac ttagagcaga aatcgaaagc gcagcagcag actaccggcg
     4141 agatgctgaa agccgcattc agcgagcacg agaagtctgt cagagcggaa ctgaacgaaa
     4201 gcgagaagag aatcagcgcc gccatcctag accacgaccg gaagctgtcc t
//
