LOCUS       NZ_OU015333             2137 bp    DNA     circular CON 26-JAN-2024
DEFINITION  Salmonella enterica subsp. enterica serovar Typhimurium strain
            AUSMDU00027951 isolate AUSMDU00027951 plasmid P05, complete
            sequence.
ACCESSION   NZ_OU015333
VERSION     NZ_OU015333.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA8520471
            Assembly: GCF_907163195.1
KEYWORDS    RefSeq.
SOURCE      Salmonella enterica subsp. enterica serovar Typhimurium (Salmonella
            typhimurium)
  ORGANISM  Salmonella enterica subsp. enterica serovar Typhimurium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1
  AUTHORS   Ashcroft,M., Baines L,S., Williamson,D. and Ingle,D.
  TITLE     Direct Submission
  JOURNAL   Submitted (09-APR-2021) UNIVERSITY OF MELBOURNE, Williamson
            Laboratory, Doherty Institute, Australia
COMMENT     ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 01/24/2024 14:12:40
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,172
            CDSs (total)                      :: 5,049
            Genes (coding)                    :: 4,917
            CDSs (with protein)               :: 4,917
            Genes (RNA)                       :: 123
            rRNAs                             :: 8, 7, 7 (5S, 16S, 23S)
            complete rRNAs                    :: 8, 7, 7 (5S, 16S, 23S)
            tRNAs                             :: 86
            ncRNAs                            :: 15
            Pseudo Genes (total)              :: 132
            CDSs (without protein)            :: 132
            Pseudo Genes (ambiguous residues) :: 0 of 132
            Pseudo Genes (frameshifted)       :: 34 of 132
            Pseudo Genes (incomplete)         :: 108 of 132
            Pseudo Genes (internal stop)      :: 18 of 132
            Pseudo Genes (multiple problems)  :: 26 of 132
            Pseudo Genes (short protein)      :: 1 of 132
            CRISPR Arrays                     :: 3
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            OU015333.1.
            Complete genome of Salmonella enterica subsp. enterica serovar
            Typhimurium AUSMDU00027951.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..2137
                     /organism="Salmonella enterica subsp. enterica serovar
                     Typhimurium"
                     /mol_type="genomic DNA"
                     /strain="AUSMDU00027951"
                     /serovar="Typhimurium"
                     /isolate="AUSMDU00027951"
                     /isolation_source="feces"
                     /host="Homo sapiens"
                     /sub_species="enterica"
                     /db_xref="taxon:90371"
                     /plasmid="P05"
                     /geo_loc_name="Australia"
                     /collection_date="2012"
     gene            join(1572..2137,1..430)
                     /locus_tag="KKQ95_RS25700"
     CDS             join(1572..2137,1..430)
                     /locus_tag="KKQ95_RS25700"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020240588.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein rep"
                     /protein_id="WP_038989441.1"
                     /translation="MQNPKLKNLTDYSPDDKPWDVHKSQSDDVGGIYLRAAEFEAYAAR
                     MRDCGGLLRFGWSTLKDTGETRLRLREAHFCRVRHCPVCQWRRSLMWQARFYQSLPKIV
                     ADYPDARWMFLTLTVRNCAIEDLGDTLTAMNAAFQRMKVRKEFKSVQGWIRTTEVTRGR
                     DGSAHPHFHTLMMVPPGMLNGHDYVKHYRWVELWRDCLRVDYDPNVDVRAVKPRKPKDG
                     QTLACATAELVRGAVAETLKYSTKPADMVADPDWFLELTRQTHKRRFVATGGALKDVLK
                     LEQETDQDMVIGDDISDGEDDGSRLAFGWDSTPRKYVRLPERDKFKSDPD"
                     /name="protein rep"
     Typing          complement(151..341)
                     /name="ColpVC"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="84.375"
                     /coverage="98.0"
                     /evalue="1.4200000000000001e-44"
ORIGIN
        1 gcactaccgc tgggttgaac tctggcgtga ctgcctgcgc gttgattacg atcctaatgt
       61 tgatgttcgg gcagtgaaac cccgcaagcc taaagatggc cagactctgg catgtgccac
      121 tgctgaactg gtgcgcggtg ccgttgctga aaccctgaaa tattcgacaa agccggctga
      181 tatggttgcc gacccggact ggttcttaga gctgacccgg cagacgcata aacgccgttt
      241 tgttgcgacc ggtggcgctc tgaaagacgt tctgaaactg gagcaggaaa cggatcagga
      301 catggtgatc ggggatgata tttccgatgg tgaagacgat ggttcacgcc tcgcctttgg
      361 ctgggattcg acgccaagaa aatacgtccg tttgcctgaa cgcgataagt ttaaatcaga
      421 tcctgattag ggtgtcgggg cctgccctga ccaggttgtt tttggatgcc gctgcgtgtg
      481 gcggtactcc aaaaacacat cttgtccggt acacagattt cctttggcat tccttcgggt
      541 ttccctgaga tttccactct gcatacatac acgcatacac gaataatcaa cggcagaatt
      601 cgggcaggat atgtaaagtg ggaccacttt acgcctgcct tattcgcact ctgctcaatg
      661 gaatattaaa tctgacagcg ttcgccgccg tcgaatcgtc aacttctaaa tcgggggatc
      721 cctttagggt tccgatttag tggttgtacg actgcacccc tcataccctt gtgatgggtg
      781 atggttcaca tggtgagcca tcgccctgta aagccgcttt ttaccccctt caaggcgttg
      841 cctgtggggt aggtgcgtaa gccctgccct acaggtgatg ccgtgggggt attttcgttt
      901 tgctcggtat gccttattcg tttaaatccg ccatcaggag tatgcggggt aaagtcgtgc
      961 ggccgcgatg aggaacgggg attgcccccg cagctctgcg aggaggcaca cgccgttcgg
     1021 aatcggggtc cactctgttt aatagtggac tcttgttgcg atttgcaacg gaaacagccg
     1081 cgtgcagtga atgtaatact gcacgtttgt ctcaatctga catttctcag ggggggcgat
     1141 ttaacgtggt ttgcttaatt tttgagctta cgaatgcttg agtgtttgag tgcctgaatg
     1201 ctgcttttgg gggttggttt ttcggccctg aaaggggcga aatccttgta tttatactta
     1261 agggataact ctaggattca aattcgcttc cagcccttgt gccgcaaggc ctgagagcca
     1321 atttgctcga aaatggtttt gtgagtatga tttctgacag gtgatcgtgt ccgcgaacta
     1381 atttttgatt acttggggtg gttcccaaga ccttacttac tgacacgatg atatgagaaa
     1441 cccctgcaag tgctaccaac acttcagggg cgcgatcacc tggctaaata cggtttgaaa
     1501 tcgactcgca acaggtgata cggaaatgat aacacaccct tccagcgcct gcccatattg
     1561 gagcaggtgc tatgcagaat cctaagctaa agaaccttac tgactacagt cccgacgata
     1621 agccgtggga cgttcacaag tcgcaatctg atgatgttgg cggtatctat ctgcgtgcag
     1681 ctgaatttga ggcgtatgcg gctcgtatgc gcgattgtgg cggcttgctg cgttttggct
     1741 ggtctaccct taaagacacc ggagaaacgc gtttacggct tcgtgaggcg catttctgcc
     1801 gcgttcgtca ctgccctgtc tgccagtgga ggcgttccct gatgtggcaa gcccgttttt
     1861 atcagtctct gccgaaaatc gtcgctgatt accctgatgc ccgctggatg ttcctcacgc
     1921 tcaccgttcg caactgtgcg atcgaggatc tcggggacac gcttactgcc atgaatgccg
     1981 cattccagcg catgaaggtt cgcaaggaat ttaaatccgt acagggatgg attcgcacca
     2041 cagaagttac ccgcggtcgt gatggctctg cacaccccca ctttcacacc ctgatgatgg
     2101 ttcctcctgg gatgctgaac ggtcatgact acgttaa
//
