LOCUS       NZ_OU015332             2230 bp    DNA     circular CON 26-JAN-2024
DEFINITION  Salmonella enterica subsp. enterica serovar Typhimurium strain
            AUSMDU00027951 isolate AUSMDU00027951 plasmid P04, complete
            sequence.
ACCESSION   NZ_OU015332
VERSION     NZ_OU015332.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA8520471
            Assembly: GCF_907163195.1
KEYWORDS    RefSeq.
SOURCE      Salmonella enterica subsp. enterica serovar Typhimurium (Salmonella
            typhimurium)
  ORGANISM  Salmonella enterica subsp. enterica serovar Typhimurium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1
  AUTHORS   Ashcroft,M., Baines L,S., Williamson,D. and Ingle,D.
  TITLE     Direct Submission
  JOURNAL   Submitted (09-APR-2021) UNIVERSITY OF MELBOURNE, Williamson
            Laboratory, Doherty Institute, Australia
COMMENT     ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 01/24/2024 14:12:40
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,172
            CDSs (total)                      :: 5,049
            Genes (coding)                    :: 4,917
            CDSs (with protein)               :: 4,917
            Genes (RNA)                       :: 123
            rRNAs                             :: 8, 7, 7 (5S, 16S, 23S)
            complete rRNAs                    :: 8, 7, 7 (5S, 16S, 23S)
            tRNAs                             :: 86
            ncRNAs                            :: 15
            Pseudo Genes (total)              :: 132
            CDSs (without protein)            :: 132
            Pseudo Genes (ambiguous residues) :: 0 of 132
            Pseudo Genes (frameshifted)       :: 34 of 132
            Pseudo Genes (incomplete)         :: 108 of 132
            Pseudo Genes (internal stop)      :: 18 of 132
            Pseudo Genes (multiple problems)  :: 26 of 132
            Pseudo Genes (short protein)      :: 1 of 132
            CRISPR Arrays                     :: 3
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            OU015332.1.
            Complete genome of Salmonella enterica subsp. enterica serovar
            Typhimurium AUSMDU00027951.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..2230
                     /organism="Salmonella enterica subsp. enterica serovar
                     Typhimurium"
                     /mol_type="genomic DNA"
                     /strain="AUSMDU00027951"
                     /serovar="Typhimurium"
                     /isolate="AUSMDU00027951"
                     /isolation_source="feces"
                     /host="Homo sapiens"
                     /sub_species="enterica"
                     /db_xref="taxon:90371"
                     /plasmid="P04"
                     /geo_loc_name="Australia"
                     /collection_date="2012"
     gene            complement(join(1241..2230,1..27))
                     /gene="mobV"
                     /locus_tag="KKQ95_RS25690"
     CDS             complement(join(1241..2230,1..27))
                     /gene="mobV"
                     /locus_tag="KKQ95_RS25690"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /GO_function="GO:0003677 - DNA binding [Evidence IEA]"
                     /GO_process="GO:0006310 - DNA recombination [Evidence IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="MobV family relaxase"
                     /protein_id="WP_094316239.1"
                     /translation="MRSPDWPDGRRNEGVSMANYAIMRCKKLTGMGSVASALQHCYRER
                     ETPNADAERTPENYCSVSQSADEAMGKLRELLPEKRRKDAVLAVEYVMTASPEWWNEAT
                     PRQQAEFFARSEQWLEKKYGKDRVVAAVVHRDEATPHLSAFVVPLTQDGRLSAKEFIGG
                     RSKMREDQSTYAESVKKLGLERGIEGSRATHQTVQHYYESINRGTRSQVSISPEALEPR
                     VLRKGIFTKDVEDQAAIAKRLSHAVNDGFAGTIAMASQSAQNAKRARELQKTMDAQQKR
                     LQSVTEPFKGLSREQMTEILMMAQRFKQQNQEKEKQQRIEREKQRQTRSRGMGGMER"
                     /name="mobV"
     gene            745..1179
                     /locus_tag="KKQ95_RS25695"
     CDS             745..1179
                     /locus_tag="KKQ95_RS25695"
                     /inference="COORDINATES: protein motif:HMM:NF017542.4"
                     /GO_function="GO:0003677 - DNA binding [Evidence IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="WP_004193480.1"
                     /translation="MSNRITQIDTATGEEVGSFVAVIRPKQKSAFERHFTMNQDALKIL
                     AKTLTGEQFKVLMMLLADLDYENYIQIAQADIADALGMQKTNVSRSVKALIDLSVILQG
                     PKVGRSYSYRLNPQFGWKGTVSNHKKALKNGLSVIQGGRT"
                     /name="helix-turn-helix domain-containing protein"
     Typing          complement(1245..2230)
                     /name="MOBV"
                     /typing="relaxase"
                     /tool="MOB-suite"
                     /identity="96.96"
                     /coverage="97.0"
                     /evalue="0.0"
ORIGIN
        1 tccatccggc cagtcggggg atcgcattgc gatgcctccg gcgggccact atcaggatga
       61 tagtgtactc actagacttt gcttcgcaaa atcgttcggg cagcaagctg ccagaaggtc
      121 aaaatcaacg gcggtctggc aggtggaagg cgtcgctccg cgtcacctcc caccactgcc
      181 aagcctgttt tatttgtgcg tcgtcaaggg tgaaatgcac tcgctccgct cgcccttgac
      241 gaaatcagga tctggatatc gcttttgaaa gagcaggaac cgctcgccgc agatcggatt
      301 agggagcggc aacgccgcga gtctgtccga tcgaggaagc ggaatttcca ctccccggac
      361 atagaaatcc gtacgctcca gactcaaaaa agctcgtttt tcgatgttta aaaatggcgt
      421 ttttcagcct ttatttcccc ccttaatata tagatataga tacgggaacc cgcgcacacc
      481 aagggctaga gagaagaatc gtactcacct caagtactaa tcgtactcac ctcaagtact
      541 aatcgtactc acctcaagta ctaatcgtac tcatctcaag tactaatcgt actttaggta
      601 tggcactcgc tacgctcgct ataagataca gaagagagcc ttctctcagc ccttgtgggg
      661 cgcggctctc gcttgacgat agttatcatt attgataacg ttgttatcat tattgataac
      721 tatttttttg ggagagcctc ttaaatgagt aaccgaatta ctcagataga cactgctaca
      781 ggggaagagg taggtagttt tgtcgcagtt atccgaccca aacagaagtc agcttttgag
      841 aggcatttca ctatgaacca agacgcttta aagatccttg ctaagaccct cacaggggag
      901 caattcaaag tcttgatgat gctgttagct gatctcgatt atgaaaatta catccaaatt
      961 gcccaagccg atattgccga cgctttaggt atgcagaaaa ccaatgtaag ccgttcggtt
     1021 aaggcgctaa ttgacctatc cgtgattctt caaggcccaa aagtagggcg cagttacagt
     1081 taccgtctga accctcagtt tggctggaaa ggtactgtca gcaaccacaa gaaagcacta
     1141 aaaaacggcc tcagcgttat acagggcggc agaacctaat ctggaatgcc gcaaatgacg
     1201 tcactttgcg gcgttagccc tatcctgcat cgcatcaaaa ctaacgctcc ataccaccca
     1261 tgccacgcga tcgcgtctgt cgctgttttt cacgttcaat acgctgctgt ttttcctttt
     1321 cctggttttg ctgcttaaac cgctgagcca tcatcaggat ttcggtcatc tgctctctgg
     1381 aaagcccctt aaaaggctct gtaacgctct gtaggcgttt ctgctgcgca tccatagtct
     1441 tctgtagctc acgcgctctt tttgcgttct gggcgctctg agaggccata gcgatggttc
     1501 ctgcaaagcc atcgttcact gcgtggctta gacgtttggc tatggctgcc tgatcttcca
     1561 cgtctttggt gaaaattccc ttccgcaata cacgcggctc cagcgcctcc ggcgagatcg
     1621 atacctggct acgggtgcca cggtttatcg attcgtagta gtgctgaact gtctgatgcg
     1681 tggcgcggct tccctcgatg ccgcgctcaa gacccagttt ttttactgat tcagcgtagg
     1741 tgctctgatc ttcacgcatc tttgaccgcc cgccaataaa ctctttcgcg gacagccgtc
     1801 catcctgcgt caatggcacc acgaacgcag acaggtgcgg ggtggcctcg tcccggtgaa
     1861 ccaccgccgc cacaacacga tccttcccgt atttcttctc cagccattgc tcagagcggg
     1921 cgaaaaactc cgcctgctgc cgcggtgtgg cctcgttcca ccactcaggg cttgccgtca
     1981 taacgtattc aacagccagt accgcatctt tacggcgttt ttccggcaac agctcccgca
     2041 gctttcccat cgcctcatct gccgactgag acacagagca gtagttttct ggtgtccgtt
     2101 cagcgtcagc attcggcgtc tcacgctccc tgtagcagtg ctgcaacgcg ctggccacac
     2161 tgcccattcc cgtcagcttt ttgcagcgca ttatcgcgta attcgccatg cttaccccct
     2221 cgttccggcg
//
