LOCUS       NZ_OU015331             2640 bp    DNA     circular CON 26-JAN-2024
DEFINITION  Salmonella enterica subsp. enterica serovar Typhimurium strain
            AUSMDU00027951 isolate AUSMDU00027951 plasmid P03, complete
            sequence.
ACCESSION   NZ_OU015331
VERSION     NZ_OU015331.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA8520471
            Assembly: GCF_907163195.1
KEYWORDS    RefSeq.
SOURCE      Salmonella enterica subsp. enterica serovar Typhimurium (Salmonella
            typhimurium)
  ORGANISM  Salmonella enterica subsp. enterica serovar Typhimurium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1
  AUTHORS   Ashcroft,M., Baines L,S., Williamson,D. and Ingle,D.
  TITLE     Direct Submission
  JOURNAL   Submitted (09-APR-2021) UNIVERSITY OF MELBOURNE, Williamson
            Laboratory, Doherty Institute, Australia
COMMENT     ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 01/24/2024 14:12:40
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,172
            CDSs (total)                      :: 5,049
            Genes (coding)                    :: 4,917
            CDSs (with protein)               :: 4,917
            Genes (RNA)                       :: 123
            rRNAs                             :: 8, 7, 7 (5S, 16S, 23S)
            complete rRNAs                    :: 8, 7, 7 (5S, 16S, 23S)
            tRNAs                             :: 86
            ncRNAs                            :: 15
            Pseudo Genes (total)              :: 132
            CDSs (without protein)            :: 132
            Pseudo Genes (ambiguous residues) :: 0 of 132
            Pseudo Genes (frameshifted)       :: 34 of 132
            Pseudo Genes (incomplete)         :: 108 of 132
            Pseudo Genes (internal stop)      :: 18 of 132
            Pseudo Genes (multiple problems)  :: 26 of 132
            Pseudo Genes (short protein)      :: 1 of 132
            CRISPR Arrays                     :: 3
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            OU015331.1.
            Complete genome of Salmonella enterica subsp. enterica serovar
            Typhimurium AUSMDU00027951.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..2640
                     /organism="Salmonella enterica subsp. enterica serovar
                     Typhimurium"
                     /mol_type="genomic DNA"
                     /strain="AUSMDU00027951"
                     /serovar="Typhimurium"
                     /isolate="AUSMDU00027951"
                     /isolation_source="feces"
                     /host="Homo sapiens"
                     /sub_species="enterica"
                     /db_xref="taxon:90371"
                     /plasmid="P03"
                     /geo_loc_name="Australia"
                     /collection_date="2012"
     gene            join(2638..2640,1..327)
                     /locus_tag="KKQ95_RS25675"
     CDS             join(2638..2640,1..327)
                     /locus_tag="KKQ95_RS25675"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_052909321.1"
                     /translation="MKILPAEPGLYFFASFESGAHVYKVVAWSENENGGLDPQCVLTAL
                     YDKSSSSQQWELHSTSASAYQHSNDGRPFMYFITYFTSNGGIPELYNAINTLAERWGYP
                     LIDLP"
                     /name="hypothetical protein"
     gene            complement(903..1103)
                     /locus_tag="KKQ95_RS25680"
     CDS             complement(903..1103)
                     /locus_tag="KKQ95_RS25680"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000166333.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="antitoxin VbhA family protein"
                     /protein_id="WP_052909318.1"
                     /translation="MARSPDPRQRTEGFRKAEASLRLEGMDPAGTQLYENIKERVISGD
                     ITYEQGRADILAHYQKRANGH"
                     /name="antitoxin VbhA family protein"
     gene            2123..2554
                     /locus_tag="KKQ95_RS25685"
     CDS             2123..2554
                     /locus_tag="KKQ95_RS25685"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003511628.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF6530 family protein"
                     /protein_id="WP_001025244.1"
                     /translation="MNIPTHLKHKPIIAVENYDRIDGPYADDTDAMGLSVGIAQWNTPG
                     YTELSAKVWRNTGEKWSRQSEELPLHRVIDLATLICIAMDYSKHGRLSSSDDFPVSRSG
                     GNPELSRHIDLMKNELKENHEHLDESLKRLAAELKRLGY"
                     /name="DUF6530 family protein"
     Typing          1292..1845
                     /name="rep_cluster_2335"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="86.903"
                     /coverage="92.0"
                     /evalue="1.49e-173"
ORIGIN
        1 aagatcctac cagctgaacc gggattatat tttttcgcat cttttgagtc cggtgctcac
       61 gtttacaaag tagtggcctg gtcagaaaat gagaatggtg gtttagatcc acagtgtgtg
      121 ttaacggcct tatatgacaa gagcagttcc agccagcaat gggaacttca ctcaacttca
      181 gcatctgcat atcagcacag caatgacggc agaccattta tgtattttat cacctacttc
      241 accagcaatg gcgggatacc tgaactttat aacgcaataa acacactagc cgaacgatgg
      301 ggatacccat taattgattt accataacat tcgttgcgtg caccatctca gacgccctca
      361 gggcatttct gcgccctcca gcctatttcc ggcatctttc cctgtccata tcgtgaaaaa
      421 acgcgcctga tgatttctgc gcggctgcat ggctatgcac gcaggtgaat ggcggtcgat
      481 ttggggtgga tgctggcatg aaagcctgct ttccggcgca taactccccc gataacggtg
      541 aacgggtgca cagtttactg tgcgaccgtg aggcgttggc caagccgtca ggcatggcag
      601 aatttactac caagcaggag gtcggattta acgtggataa tcagcacgca gtgatgaacg
      661 ggattcggaa ggggaaccct tgcggcgcgg cgatgtatac atcgctaacg tgccttactc
      721 ttttcacagc agagggtagc ggtagcaaac aagtagcaaa cagatagcaa acaagtagca
      781 aacagatagc aaaaagatag caaacaagta gcaaacagat agcaaataca ggaaaagcct
      841 ggccggagag aggccacgcc tgtttttttg aggaagcgat ggtacctagt ttcctgtccg
      901 tgtcagtggc cgttcgcacg cttctggtaa tgagccagaa tgtctgcccg tccctgttcg
      961 taagtgatat ccccggaaat aacccgctcc ttgatatttt cgtacagctg cgttccggcg
     1021 gggtccatgc cttcaagcct cagcgacgct tccgctttgc ggaaaccctc agtacgttgt
     1081 cgtggatcgg gggacctggc catcgatgtt cctttgagct gtaagcgaat aaggcaggcg
     1141 gtaaagtagg cctactttac atatcctgcc cgtactctgc cgttgtttat ccgtgcagac
     1201 gaatgtgtaa accggaagga aagtattgca ggaaactgtg taatccggcg gtaaagagag
     1261 ggtacggcgc gacacgagcc caatcaggca tcgcagatct tccgcttcct cgctcactga
     1321 ctcgctacgc tcggccgttc ggctgcggcg agcggtaccg gcagtccacc tggagttacc
     1381 cacagattcg ggggtagcgg aaggagaaag aggggaacag aaaaggccgc ggcgaagccg
     1441 tttttccata ggcttcgccc ccctgacaag catcacagaa tctgacgctc aaatcagtgg
     1501 tggcgaaacc cgacaggact ataaagatcc caggcgtttc cccctggtag ctccctcgtg
     1561 cgctctcctg ttcctgccat tcggtttacc ggtgtcattc cgctgttatg gccgcgttta
     1621 tctcattcca cgcctgacac tcagttccgg gtaggcagtt cgctccaagc tggactgtat
     1681 gcacgaaccc cccgttcagt ccgaccgctg cgccttttcc ggtaactatc aacttgagtc
     1741 caacccggaa agacacgaca aagcgccact ggcagcagcc actggtaaac aggatgtgcg
     1801 agagatgtat cgagagttct tgaagtggtg gcctgactgc ggctacactg aaaggacaga
     1861 tttggtgaca tgtctcgcac aagactgtta ccacggttag agaatctgcc aggattaact
     1921 aaccttcgaa aaaccacctg ccagggtggt tttttcgttt tctgagcaag agattacgct
     1981 ctgccataaa tgatctcaag aagatccacg ccaacaactt caaatccatc aattcacaaa
     2041 atgttacact tactaattag taaaataagc tgttttgtta ttttgttaat taacaaccta
     2101 aattcacata aaagagaatg atatgaacat ccctactcat ctgaaacaca aaccgattat
     2161 cgctgtagaa aactatgatc gaattgatgg accttatgct gatgacactg atgctatggg
     2221 gctttccgtt ggaattgctc aatggaacac ccccgggtat accgagctat cagcaaaagt
     2281 gtggcgcaac accggagaaa agtggtcacg gcaatcagaa gaattacctc ttcatcgtgt
     2341 tatcgacttg gcaacgctta tctgcatagc aatggattac agtaaacatg gccgcttatc
     2401 ttccagcgac gactttccgg tcagtcgttc aggaggcaat cctgagttat ctcgtcacat
     2461 tgatttaatg aaaaacgagc taaaagagaa tcacgagcat ttagatgaga gtcttaagcg
     2521 tttagcagca gaactaaaac gtttaggtta ttaacctccc agtgattttt tatacccacc
     2581 acggggaatt aggtagttat tgcctctcag acagaataaa caaaaggaag ctagctaatg
//
