LOCUS       NZ_OR126578             4657 bp    DNA     circular CON 14-AUG-2023
DEFINITION  Salmonella enterica subsp. enterica serovar Rissen strain 4_29_19
            plasmid p4_4_29_19, complete sequence.
ACCESSION   NZ_OR126578
VERSION     NZ_OR126578.1
DBLINK      BioProject: PRJNA224116
KEYWORDS    RefSeq.
SOURCE      Salmonella enterica subsp. enterica serovar Rissen
  ORGANISM  Salmonella enterica subsp. enterica serovar Rissen
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 4657)
  AUTHORS   Fortini,D., Garcia-Fernandez,A. and Villa,L.
  TITLE     Isolation and characterization of blaKPC-producing S. enterica
            serovar Rissen from human in 2018
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 4657)
  AUTHORS   Fortini,D., Garcia-Fernandez,A. and Villa,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (10-JUN-2023) Dipartimento Malattie Infettive, ISTITUTO
            SUPERIORE DI SANITA', viale Regina Elena 299, ROMA, RM 00163, Italia
COMMENT     ##Assembly-Data-START##
            Assembly Method :: FullForcePlasmidAssembler (FFPA.py) v. 2023
            Assembly Name                     :: 4_29_19
            Coverage                          :: 400x
            Sequencing Technology             :: Illumina
            ##Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 08/14/2023 06:30:44
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.5
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 6
            CDSs (total)                      :: 6
            Genes (coding)                    :: 5
            CDSs (with protein)               :: 5
            Genes (RNA)                       :: 0
            tRNAs                             :: 0
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 1
            CDSs (without protein)            :: 1
            Pseudo Genes (ambiguous residues) :: 0 of 1
            Pseudo Genes (frameshifted)       :: 0 of 1
            Pseudo Genes (incomplete)         :: 1 of 1
            Pseudo Genes (internal stop)      :: 0 of 1
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            OR126578.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..4657
                     /organism="Salmonella enterica subsp. enterica serovar
                     Rissen"
                     /mol_type="genomic DNA"
                     /strain="4_29_19"
                     /serovar="Rissen"
                     /sub_species="enterica"
                     /db_xref="taxon:399587"
                     /plasmid="p4_4_29_19"
     gene            complement(join(4633..4657,1..722))
                     /locus_tag="RA111_RS00005"
     CDS             complement(join(4633..4657,1..722))
                     /locus_tag="RA111_RS00005"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_023138587.1"
                     /translation="MLSMYILVQAPVLTGLSKNQTESLTTNNKRGRRTAFYRIKKHLQH
                     DFYRIDSIKNEIHSPIKGFYMKDMKAVVVFTGKDLNIMRTEGGSGYWHARTDRLNDADY
                     LIAVRNRRETWAVKDLEHGTAFLIAKITGCFKSPDYDDRNVITFDEYAEIHTPKAWKML
                     TDGQRYPVAYLSAQEAFLRIGVTPEQLEWKKFHPSSPSVPNTVIPGLAEEKTEKLSLNE
                     AIERAKKDISNATGIDSSAITISIKI"
                     /name="hypothetical protein"
     gene            1003..1482
                     /locus_tag="RA111_RS00010"
     CDS             1003..1482
                     /locus_tag="RA111_RS00010"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001050742.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_023138585.1"
                     /translation="MNLLLPRDIVEAVLNDKKTKNARVAKCDGSEFFLELPSMNADFPA
                     GKIILKLGDSGFYNKRTKSLEGAYGLRHIWDKHRVEIGATSAEDIVIFLESILLAGAEV
                     LIDPKKGQNKAIVVESGTGMMILELKKPNGEDPYYSIITAYDRKSHPGTKLHTII"
                     /name="hypothetical protein"
     gene            2729..3052
                     /locus_tag="RA111_RS00015"
     CDS             2729..3052
                     /locus_tag="RA111_RS00015"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000957083.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MobC family plasmid mobilization relaxosome
                     protein"
                     /protein_id="WP_001347450.1"
                     /translation="MLTMWVTEDEHRRLLERCDGKQLAAWMRQTCLDEKPARAGKLPSL
                     SPALLRQLAGMGNNLNQIARQVNAGGGSGHDRVQVVAALMAIDAGLERLRHAVLEKGAD
                     DDR"
                     /name="MobC family plasmid mobilization relaxosome protein"
     gene            3261..>3695
                     /locus_tag="RA111_RS00020"
                     /pseudo=""
     CDS             3261..>3695
                     /locus_tag="RA111_RS00020"
                     /inference="COORDINATES: protein motif:HMM:NF015397.2"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo=""
                     /codon_start=1
                     /transl_table=11
                     /product="relaxase/mobilization nuclease domain-containing
                     protein"
                     /name="relaxase/mobilization nuclease domain-containing
                     protein"
     gene            3730..4215
                     /locus_tag="RA111_RS00025"
     CDS             3730..4215
                     /locus_tag="RA111_RS00025"
                     /inference="COORDINATES: protein motif:HMM:NF016710.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MbeB family mobilization protein"
                     /protein_id="WP_001086854.1"
                     /translation="MNSLLTLAKDLEQKSKAQQQSTGEMLKAAFSEHEKSVRAELSESE
                     KRISAAILDHDRKLSAAMSQRTKGMLRMVSQTWLTIVLVSTLLTASGASILWWQGQQIL
                     DNYTTIREQKRTQAMLSERNSGVQLSTCGEQRRRCVRVNPEAGRFGEDSSWMILAGK"
                     /name="MbeB family mobilization protein"
     gene            4219..4434
                     /locus_tag="RA111_RS00030"
     CDS             4219..4434
                     /locus_tag="RA111_RS00030"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000137421.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MbeD family mobilization/exclusion protein"
                     /protein_id="WP_000137421.1"
                     /translation="MTELEKQLLSALEQLQQDYSKRLDEWENAFAEWRTMSGLMQRENA
                     ALSERVTGLSRQVQSLSEQLRRLSQG"
                     /name="MbeD family mobilization/exclusion protein"
     Typing          2442..2625
                     /name="MOB_unknown"
                     /typing="oriT"
                     /tool="MOB-suite"
                     /identity="85.561"
                     /coverage="86.0"
                     /evalue="2.7100000000000003e-47"
     Typing          complement(1983..2459)
                     /name="ColRNAI_rep_cluster_1987"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="90.083"
                     /coverage="92.0"
                     /evalue="3.51e-174"
     Typing          3043..4538
                     /name="MOBP"
                     /typing="relaxase"
                     /tool="MOB-suite"
                     /identity="91.583"
                     /coverage="100.0"
                     /evalue="0.0"
ORIGIN
        1 gctgagctat caatccctgt tgcgttgcta atatcctttt tggctctttc aattgcctcg
       61 ttaagggaga gtttttctgt tttctcttca gccagaccag gaatcactgt attaggaacc
      121 gatggggatg aaggatggaa tttcttccat tccagttgtt ccggtgttac cccaatacgt
      181 aaaaaagctt cctgtgcgct caggtaagca accggatagc gctgaccatc ggttagcatt
      241 ttccatgctt ttggcgtgtg aatttctgcg tattcatcaa aggttatgac gttcctgtcg
      301 tcgtaatcag ggcttttaaa acacccggta attttggcga tcaggaatgc tgtgccgtgt
      361 tccaggtctt ttactgccca cgtttccctt ctgtttctta ctgctatgag gtaatcggca
      421 tcgttgagcc tgtctgttct ggcatgccag tagcctgacc ccccctcagt tctcattatg
      481 ttcaaatcct tcccggtaaa aaccacaaca gctttcatat ctttcatata gaaaccctta
      541 ataggtgagt gaatttcatt ttttatggaa tctatacgat aaaaatcgtg ttgtaaatgt
      601 ttttttatgc gataaaatgc agtcctccta cctcttttat tgttagtggt aaggctttct
      661 gtttggtttt ttgataaacc ggttaaaaca ggggcttgga cgaggatata cattgaaagc
      721 atgagcaatt cacgtggctg catggctatg cagccacgtg aaatttatca ggcgcagaat
      781 gcgcggttta gcggggagtt tactgccgat tttaccgggc taacgccgct ttcacgctga
      841 acccgtccgg agcggtgcgg gcaaggaatg ttatggtaaa tacaactggt tttttctatc
      901 aagatttact ggaaattgct cattacgtca gtgttagaat cagcccttca aaaagggatt
      961 taacgcctaa acataatagt gaaggctata gaggtgtagt ttgtgaactt gttacttcca
     1021 cgcgatatag ttgaagctgt tcttaatgat aagaaaacaa aaaatgcacg agtggctaag
     1081 tgtgatggaa gtgaattttt tctagaactg ccaagcatga atgcagactt tcccgcaggg
     1141 aaaatcatcc tcaagctagg agattccggt ttttacaaca aaaggacaaa aagtctcgag
     1201 ggagcctatg gccttaggca tatatgggac aagcatcgtg tcgagatagg agctacttcc
     1261 gctgaggata ttgtcatctt tttggagagc atattattag ctggggcaga agtgctcata
     1321 gatcctaaaa aaggccaaaa caaagcgatt gttgtagagt caggaacggg gatgatgata
     1381 ctagaattga aaaaaccaaa cggcgaagac ccgtactaca gcatcattac tgcttatgat
     1441 aggaagagcc atccaggtac aaaacttcat accataatat gaaaaaagcc ggctaaatag
     1501 ccgacttctt cgtaatagtg ttgttcgtgg cattccctta gcatttcggt tcgggacagg
     1561 tctttgacct taacaacgca ttgtcgaaat ctggtttccg acaagtagcc tacaaatatg
     1621 taaccaatcc agagttcagg ttacatacca agcccttcta cacatacaga atacaactct
     1681 atcactgctc atctttttgc aaaaagtgct attttggtgt tcagtggaaa ccaaaacgaa
     1741 gccaaatcac tggtaaacgg tcagatctcc ttgtgatcgt tttactctcg tcgtaatctc
     1801 tctccctgta aacgaaaaaa ccacccggca aggtggtttt tcgaaggttc agtaaaccgg
     1861 caagtttctg aaccgtggta acagtcttgt gcgagacatg tcaccaaata ctgtccttcc
     1921 agtgtagcct cactaaggcc tccacttcaa gaactctcga tacatctctc gcacatcctg
     1981 cttaccagtg gccgctgcca gtggcgttaa gtcgtgtctt ttcgggttgg actcaagacg
     2041 atagttaccg gataaggcgc agcggtcgga ctgaacgggg ggttcgtgca tacagtccag
     2101 cttggagcga actgcctacc cggaactgag tgtcaggcgt ggaatgagat aaacgcggcc
     2161 ataacagcgg aatgacaccg gtaaaccgaa aggcaggaac aggagagcgc acgagggagc
     2221 caccaggggg aaacgcctgg tatctttata gtcctgtcgg gtttcgccac cactgatttg
     2281 agcgtcagat ttcgtgatgc ttgtcagggg ggcggagcct atggaaaaac ggcaacgccg
     2341 gatccttttc cccttccttc ttgatttgag cgctatttat ctcgtcattc ttgagcaggt
     2401 aacgcccgcc gcagtctcac ggcaggagcg tagcgaccga gtgagcgagg aggcgtcatt
     2461 tcatcgtctc cagcatttcg cacttacgcc ccacagctga attttttacc tgccacatga
     2521 agcacttccc tgaatttcca cttcgattta ccatactaag ccagtataca ctccgctagc
     2581 gctacgtgac tggttcaggg ctgcgccccg aaacccgcta aaaccactga cgcgcctgcg
     2641 gcttgtccaa caccgcgccg accgggaaaa gatttcccgc ccgtctcggc gttatcagga
     2701 ggccggattg gcagacaaac gcagcaaaat gctcacgatg tgggtgaccg aagatgagca
     2761 ccgccgtctg ctggagcgct gcgacggtaa acagcttgca gcctggatgc gccagacgtg
     2821 cctggacgag aaacccgccc gcgccggcaa gcttccctcg ctctcgccgg cgctgcttcg
     2881 tcagcttgcc ggcatgggga acaacctcaa ccagattgcc cggcaggtta acgccggtgg
     2941 tggcagcggg cacgaccgcg tgcaggtcgt cgccgcgctg atggccatag atgccggact
     3001 cgagcggctg cggcatgccg tgctggaaaa gggtgcagac gatgatcgtt aagtttcacc
     3061 cgcgagggcg cggcggtggc gccggtccgg tggattatct gctggggaaa gaccgacagc
     3121 gcgacggcgc caccgttctg caggggaagc cggaagaagt cagggagctt atcgacgcct
     3181 cgccctacgc aaaaaagtac acatccggcg tcttgtcctt tgccgaaaag gatttaccgc
     3241 ccgggcagcg cgaaaagctg atggcgagct ttgaacgggt tctgatgccc ggactcgata
     3301 aagaccagta cagcgtgctg tgggttgagc accaggataa ggggcggctg gagctgaact
     3361 tcctgatccc gaacacggag ctgctgaccg gcaagcgtct ccagccgtat tacgaccgcg
     3421 ccgaccgtcc gcgcattgat gcctggcaga ccatcgtgaa cggcaggctg gggctgcatg
     3481 acccgaacgc gcctgaaaac cggcgggtgc tggtcacgcc gtccgcgctg ccggaaacga
     3541 agcaggaagc cgctcaggca attacacggg gtttactggc cttagcctcg tccggggagc
     3601 tgaaaacccg ccaggacgtc actgaggcgc tggaaagcgc aggttttgag gtggtacgca
     3661 ccacaaaaag cagcatcagc attgccgacc cggacggggg gcgaaacatc cgactgaagg
     3721 gagccatcta tgaacagtct tttaacgctg gcgaaggact tagagcagaa atcgaaagcg
     3781 cagcagcaga gtaccggcga gatgctgaaa gccgcattca gcgagcacga gaagtctgtc
     3841 agagcggaac tgagcgaaag cgagaagaga atcagcgccg ccatcctcga ccacgacagg
     3901 aagctgtccg ctgccatgag ccagcgcacg aaaggtatgc tgcggatggt cagccagacg
     3961 tggctgacca tcgtcttggt gtctacactg ctgacagcat cgggcgcaag tattctgtgg
     4021 tggcaggggc agcagatact cgacaattac acgaccatcc gggagcagaa gcgcacgcag
     4081 gccatgctgt ccgagaggaa cagcggtgtg cagctctcga cctgcggaga gcagagacgc
     4141 cgctgcgtga gggtgaaccc ggaagcggga cggttcggag aggattcgag ctggatgata
     4201 ctggcgggga aatagcacat gacggagctg gaaaaacagt tgctgagcgc attagagcag
     4261 ctacagcagg actactcgaa aaggctggac gagtgggaga acgccttcgc ggaatggcgg
     4321 acgatgtctg gtcttatgca acgggagaac gcggcgctga gcgagcgcgt cacgggcttg
     4381 agcaggcagg tgcagagttt gagcgagcag ctgcgccggt tgtcacaagg ctgaacgtga
     4441 tagaggcaca tcgtgagcag gaacgggcgg cgcagcatca gaaagcgctg gagctggaac
     4501 gatctcagcg acagcgaacg tacaacggtc cgtcactttg aatctgtgcg ccggaaaagc
     4561 atgggcttgc tgtttctggc gtacaggttc agttctagaa catgaggctg ctatcttgtt
     4621 gttcacgctt catcagatct tgatgcttat tgttatg
//
