LOCUS       NZ_OP927731             4240 bp    DNA     circular CON 10-JUL-2023
DEFINITION  Salmonella sp. strain ZYX plasmid unnamed5, complete sequence.
ACCESSION   NZ_OP927731
VERSION     NZ_OP927731.1
DBLINK      BioProject: PRJNA224116
KEYWORDS    RefSeq.
SOURCE      Salmonella sp
  ORGANISM  Salmonella sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 4240)
  AUTHORS   Liu,H.
  TITLE     Study on pathogenic genes and transmission mechanism of non-typhoid
            Salmonella
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 4240)
  AUTHORS   Liu,H.
  TITLE     Direct Submission
  JOURNAL   Submitted (29-NOV-2022) Clinical Laboratory, The Affiliated People
            Hospital of Jiangsu University, No. 8 Dianli Road, Zhenjiang,
            Jiangsu 212002, China
COMMENT     ##Assembly-Data-START##
            Assembly Method                   :: HGAP v. v4.0; CANU v. v1.7.1
            Assembly Name                     :: Plasmid of salmonella
            Sequencing Technology             :: Illumina; Oxford Nanopore ONT
            ##Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 07/10/2023 06:51:44
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.5
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5
            CDSs (total)                      :: 5
            Genes (coding)                    :: 4
            CDSs (with protein)               :: 4
            Genes (RNA)                       :: 0
            tRNAs                             :: 0
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 1
            CDSs (without protein)            :: 1
            Pseudo Genes (ambiguous residues) :: 0 of 1
            Pseudo Genes (frameshifted)       :: 0 of 1
            Pseudo Genes (incomplete)         :: 1 of 1
            Pseudo Genes (internal stop)      :: 0 of 1
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            OP927731.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..4240
                     /organism="Salmonella sp."
                     /mol_type="genomic DNA"
                     /strain="ZYX"
                     /isolation_source="32.21 N 119.45 E"
                     /db_xref="taxon:599"
                     /plasmid="unnamed5"
                     /geo_loc_name="China"
     gene            22..345
                     /locus_tag="QZJ67_RS00005"
     CDS             22..345
                     /locus_tag="QZJ67_RS00005"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000957083.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MobC family plasmid mobilization relaxosome
                     protein"
                     /protein_id="WP_012464820.1"
                     /translation="MLTMWVTEDEHRRLLERCDGKQLAAWMRQTCLDEKPARACKLPSI
                     SPALLRQLAGMGNNLNQIARQVNAGGGSAHDRVQIVSALMAINAGLERLRHAVLEKGAD
                     DDR"
                     /name="MobC family plasmid mobilization relaxosome protein"
     gene            554..>988
                     /locus_tag="QZJ67_RS00010"
                     /pseudo=""
     CDS             554..>988
                     /locus_tag="QZJ67_RS00010"
                     /inference="COORDINATES: protein motif:HMM:NF015397.2"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo=""
                     /codon_start=1
                     /transl_table=11
                     /product="relaxase/mobilization nuclease domain-containing
                     protein"
                     /name="relaxase/mobilization nuclease domain-containing
                     protein"
     gene            1023..1508
                     /locus_tag="QZJ67_RS00015"
     CDS             1023..1508
                     /locus_tag="QZJ67_RS00015"
                     /inference="COORDINATES: protein motif:HMM:NF016710.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MbeB family mobilization protein"
                     /protein_id="WP_012464822.1"
                     /translation="MNSLLTLAKDLEQKSKAQQQSTGEMLKAAFSEHEKSVRAELSESE
                     KRISAAILDHDRKLSSAMSQRTKGMLRMVSQTWLTIVLVSALLIASSAGILWWQSQQIL
                     DNYTTIREQKSTQAMLSERNSGVQLSTCGEQRRRCVKVNPEAGRFGEDSSWMILAGK"
                     /name="MbeB family mobilization protein"
     gene            1512..1721
                     /locus_tag="QZJ67_RS00020"
     CDS             1512..1721
                     /locus_tag="QZJ67_RS00020"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014538403.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MbeD family mobilization/exclusion protein"
                     /protein_id="WP_012464823.1"
                     /translation="MTELEKQLLSALEQLQQDYSKRLDEWESAFAEWRTMSGLMQRENA
                     ALSERVTGLSRQVQSLSEQLRRLS"
                     /name="MbeD family mobilization/exclusion protein"
     gene            complement(2071..3141)
                     /locus_tag="QZJ67_RS00025"
     CDS             complement(2071..3141)
                     /locus_tag="QZJ67_RS00025"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000646535.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="zinc-dependent alcohol dehydrogenase family
                     protein"
                     /protein_id="WP_012464819.1"
                     /translation="MKAMVFYGENDVRFEERKKPEIINPGDAIIRMIKTTICGTDLGIL
                     KGKNPEIEKNAKEKTGSFNGRILGHEGVGIIEEIGSAVKNFKIGDKVIISCVSRCGTCD
                     NCQKQLYAHCRNDGGWIMGYMIDGTQAEFVRTPYADNSLYLFPDELNDDAGVLLSDALP
                     TAHEIGIQNGMVKPGDTVAIVGAGPVGMSCLLTGMLYSPSQLIMIDMDENRLAMAKDMG
                     ATHTINSAKENAINRVMELTNQRGVDCAIEAVGIEPTWNICQNIIKEGGHLANVGVHGN
                     PVSFAIEKLWIKNLTITTGLVNANTTGMLMKTCCSGKLATEKLATHHFNFNDIEKAYDV
                     FKHAADEKAMKVMINF"
                     /name="zinc-dependent alcohol dehydrogenase family protein"
     Typing          4072..4154
                     /name="MOBP"
                     /typing="oriT"
                     /tool="MOB-suite"
                     /identity="100.0"
                     /coverage="100.0"
                     /evalue="3.79e-36"
     Typing          complement(3510..3987)
                     /name="ColRNAI_rep_cluster_1987"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="88.683"
                     /coverage="92.0"
                     /evalue="4.61e-163"
     Typing          336..1831
                     /name="MOBP"
                     /typing="relaxase"
                     /tool="MOB-suite"
                     /identity="93.387"
                     /coverage="100.0"
                     /evalue="0.0"
ORIGIN
        1 ttggcagata aacgcagcaa aatgcttacg atgtgggtga ctgaggatga gcaccggcgt
       61 ctgctggagc gctgcgacgg taagcagctc gcagcctgga tgcggcagac gtgcctggac
      121 gagaagccgg cacgcgcctg caaacttccg tcgatctcgc cggcgctgct tcggcagctc
      181 gccggtatgg gtaacaacct caaccagatt gcccgccaag ttaacgccgg tggcggcagc
      241 gcacacgacc gcgtgcagat agtctccgcg ctgatggcca ttaatgccgg actcgagcgg
      301 ctgcggcatg ccgtactgga aaagggagct gacgatgatc gttaagtttc atccccgggg
      361 gcgcggcggc ggggccgggc cggtggatta tctgctggga aaagaccgcc agcgcgaagg
      421 tgccagcgtt ctgcagggta aaccggagga agtccgggag cttatcgacg cctcgcccta
      481 cgccaaaaag tacacctccg gcgtcctgtc gtttgccgaa caggacttac tgcccggcca
      541 gcgcgaaaag ctgatggcga gcttcgagcg ggttctgatg cccggactcg ataaagacca
      601 gtacagcgtg ctgtgggttg agcaccggga caaggggcgg ctggagctga acttcctgat
      661 cccgaacacg gagctgctga ccggcaggcg gctccagccg tattacgacc gcgccgaccg
      721 tccgcgcatt gacgcctggc agaccatagt gaacggcagg ctggggctgc acgacccgaa
      781 cgcgccggaa aaccggcggg cgctggtcac gccttccgcg ctgccggaag cgaagcagga
      841 agccgctcag gcgattacgc ggggcttact ggccttagcc tcgtccgggg agctgaaaac
      901 ccgtcaggac gtcactgagg cgctggaaag cgcaggtttt gaggtggtgc gtaccacgaa
      961 aagcagcatc agtattgccg acccggaggg ggggcgaaac atccgactga agggagccat
     1021 ctatgaacag tcttttaacg ctggcgaagg acttagagca gaaatcgaaa gcgcagcagc
     1081 agagtaccgg cgagatgctg aaagccgcat tcagcgagca cgagaagtct gtcagagcgg
     1141 aactgagcga aagcgagaag agaatcagcg ccgccatcct cgaccacgac cggaagctgt
     1201 cctcagccat gagccagcgt acgaaaggga tgctgcgcat ggtcagccag acgtggctga
     1261 ctatcgtcct ggtgtccgcg ctgctgatag cctcgagcgc gggcattctg tggtggcaga
     1321 gtcagcagat actcgacaat tacacgacca tccgggagca gaagagcacg caggcaatgc
     1381 tgtcagagag gaacagcggc gtgcagctct cgacctgcgg cgagcagaga cgccgctgcg
     1441 tgaaggtgaa cccggaagcg ggacggttcg gagaggattc gagctggatg atactggcgg
     1501 ggaaatagca catgacggag ctggaaaaac agttgctgag cgcattagag cagctacagc
     1561 aggactactc gaaaaggctg gacgagtggg agagcgcctt cgcggaatgg cggacgatgt
     1621 ctggtcttat gcaacgggag aacgcggcgc tgagcgagcg cgtcacgggc ttgagcaggc
     1681 aggtgcagag tttgagcgag cagctgcgcc ggttgtcgta atgctgaacg ggatagaggc
     1741 acaccgggag caggagcggg cggcgcagca tcagaaagcg ctggagctgg agcgatctca
     1801 gcgacagcgg acgtataacg gcccttcact gtgataaccg gataaaatgg ggctttcggc
     1861 ggacatctgc gctgaaagcc ggagccattc acccggctgc atggctatgc agtccgggga
     1921 aatttatcgg acgcaaaaag gcggtttccc gggtgctttg ctgcgggttt tacccggcag
     1981 gctccgtatt cgcgcccaat ccgcccggag cggtgcgggc aagggatgtt atgtttaatt
     2041 aaacactcat catgagagct agctaatttt ttaaaaatta atcataactt tcattgcttt
     2101 ttcatcagcg gcatgtttaa aaacatcata ggctttttct atatcgttaa aattaaaatg
     2161 atgagtggcg agtttttctg ttgctagttt tcctgagcag caggttttca ttaacattcc
     2221 tgttgtattt gcattaacga gacctgttgt tattgtcagg ttttttatcc acaacttctc
     2281 gatagcaaaa ctcacagggt tcccatgaac accaacgttt gctaaatgcc cgccttcttt
     2341 tataatattt tgacaaatat tccatgttgg ttcgattcca actgcttcga ttgcacaatc
     2401 gacaccacgc tggtttgtca attccataac cctattaata gcgttttctt ttgcagagtt
     2461 aatagtatga gttgccccca tatctttagc cattgccaaa cggttttcat ccatatcgat
     2521 catgatcaac tgcgatgggg aataaagcat gccggtgagt aggcaactca ttccaacagg
     2581 acccgcccca acaatagcaa cagtgtcacc aggctttacc attccattct ggatccctat
     2641 ctcgtgggct gtaggtagtg catcagaaag taaaactccg gcatcgtcat ttaattcatc
     2701 agggaataag taaagagagt tgtctgcata tggtgttctg acgaactcag cttgagttcc
     2761 atcaatcata taacccataa tccaaccacc atcatttcta caatgcgcat ataattgttt
     2821 ttgacaatta tcgcaggtgc cgcaacgact aacgcaagaa ataattacct tatcacctat
     2881 tttaaaattt ttaactgctg agccaatttc ctctattata ccaactccct catgtccgag
     2941 tattctccca ttaaaagatc ctgttttttc ttttgcattt ttctctattt ctgggttctt
     3001 tccttttaat attccaagat ctgttccaca aattgtggtt ttaatcatgc gaataatagc
     3061 gtcgcctgga ttgattatct ctggtttttt tcgttcctca aaacgaacat cattttcacc
     3121 ataaaaaacc atagctttca tttgtatatc accttatgca tccgtttact ttgtttgtat
     3181 attgtatcat ttgtttgttt tttgttgttt tttttgttct ttttgtgctt tttgtgcttt
     3241 ttgtgcttat gtcgttgggg ctgggcgggg gcgaaaatct ggaaagcgaa tcagatcttt
     3301 gtgagaacct tcttgagatc ctttttttct cgtcgtaatc ttatggtcag taaacgaaaa
     3361 aaccgcccag caaggcggtt ttttcgaagg ttcttagagc agcaactctt tgaaccgcgg
     3421 taactggctt ggaggagcgc agtcaccaaa acatgtcctt tcagtttagc cttaactggc
     3481 tcataacttc aagactaact cctctaaatc agttaccagt ggctgctgcc agtggtgctt
     3541 ttgcatgtct taccgggttg gactcaagac gatagttacc ggataaggcg cagcagtcgg
     3601 actgaacggg gggttcgtgc atacagtcca gcttggagcg aactgccttc ccggaaccga
     3661 gtgtcaggcg tggaatgaga aaccgcggcc acaacagcgg aatgacaccg gcaaaccgga
     3721 tggcaggaac aggagagcgc acgagggagc caccaggggg aaacgcctgg tatctttaag
     3781 tcctgtcggg tttcgccacc actgatttga gcgtcagatt tcgtgatgct tgtcaggggg
     3841 gcggagccta tggaaaaacg gcaacgccgc atcctttttc cggcccttac tgatccctcg
     3901 ctattccgtc atcctgttct ccgtgagtcg gtaacgcccg ccgcagcctc atgaccgaac
     3961 gtagtgagcg aatgagcgag gaggcgtaat ttcatatgtc cgtgcatgct attgcggacg
     4021 ctcctgaact acatatcaca cctgtcacat gaagcacttt cctgattaca gcactcatgc
     4081 caacatatta agccagtata cactccgcta gcgctacgtg actggttcag ggctgcgccc
     4141 cgaaacccgc caaaagccac tgacgcgcct gcggcttgtc caacaccgcg ccgatcggga
     4201 aagtatttcc cgcccgtccc ggcgttatca ggaggcctga
//
