LOCUS       NZ_OP927730             4921 bp    DNA     circular CON 10-JUL-2023
DEFINITION  Salmonella sp. strain ZYX plasmid unnamed4, complete sequence.
ACCESSION   NZ_OP927730
VERSION     NZ_OP927730.1
DBLINK      BioProject: PRJNA224116
KEYWORDS    RefSeq.
SOURCE      Salmonella sp
  ORGANISM  Salmonella sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 4921)
  AUTHORS   Liu,H.
  TITLE     Study on pathogenic genes and transmission mechanism of non-typhoid
            Salmonella
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 4921)
  AUTHORS   Liu,H.
  TITLE     Direct Submission
  JOURNAL   Submitted (29-NOV-2022) Clinical Laboratory, The Affiliated People
            Hospital of Jiangsu University, No. 8 Dianli Road, Zhenjiang,
            Jiangsu 212002, China
COMMENT     ##Assembly-Data-START##
            Assembly Method                   :: HGAP v. v4.0; CANU v. v1.7.1
            Assembly Name                     :: Plasmid of salmonella
            Sequencing Technology             :: Illumina; Oxford Nanopore ONT
            ##Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 07/10/2023 06:59:02
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.5
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 6
            CDSs (total)                      :: 6
            Genes (coding)                    :: 5
            CDSs (with protein)               :: 5
            Genes (RNA)                       :: 0
            tRNAs                             :: 0
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 1
            CDSs (without protein)            :: 1
            Pseudo Genes (ambiguous residues) :: 0 of 1
            Pseudo Genes (frameshifted)       :: 0 of 1
            Pseudo Genes (incomplete)         :: 1 of 1
            Pseudo Genes (internal stop)      :: 0 of 1
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            OP927730.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..4921
                     /organism="Salmonella sp."
                     /mol_type="genomic DNA"
                     /strain="ZYX"
                     /isolation_source="32.21 N 119.45 E"
                     /db_xref="taxon:599"
                     /plasmid="unnamed4"
                     /geo_loc_name="China"
     gene            1..324
                     /locus_tag="QZJ72_RS00005"
     CDS             1..324
                     /locus_tag="QZJ72_RS00005"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000957083.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MobC family plasmid mobilization relaxosome
                     protein"
                     /protein_id="WP_021243036.1"
                     /translation="MLTMWVTEDEHRRLLERCDGRQLAAWMRQTCLDEKPARTGKLPSI
                     SPALLRQLAGMGNNLNQIARRVNAGGGTGHDRVQIVAALMAIDAGLERLRHAVLEKGTD
                     DDR"
                     /name="MobC family plasmid mobilization relaxosome protein"
     gene            533..>967
                     /locus_tag="QZJ72_RS00010"
                     /pseudo=""
     CDS             533..>967
                     /locus_tag="QZJ72_RS00010"
                     /inference="COORDINATES: protein motif:HMM:NF015397.2"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo=""
                     /codon_start=1
                     /transl_table=11
                     /product="relaxase/mobilization nuclease domain-containing
                     protein"
                     /name="relaxase/mobilization nuclease domain-containing
                     protein"
     gene            1002..1493
                     /locus_tag="QZJ72_RS00015"
     CDS             1002..1493
                     /locus_tag="QZJ72_RS00015"
                     /inference="COORDINATES: protein motif:HMM:NF016710.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MbeB family mobilization protein"
                     /protein_id="WP_047720453.1"
                     /translation="MSSLLTLAKDLEQQSKAQQKSTGEMLKAAFSEHEQSVRAELNASA
                     RRISDAISAHEQSMSEAMEKNRRSVLLTAGRTWLTILMVSALLIATSGSILWWQGQQIT
                     DNYTHLRQQEDTLAKMTARTWGVRYQESSDGRRFLILPPGMQAEAIPYDGTTWIRLKQE
                     "
                     /name="MbeB family mobilization protein"
     gene            1500..1715
                     /locus_tag="QZJ72_RS00020"
     CDS             1500..1715
                     /locus_tag="QZJ72_RS00020"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000137422.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MbeD family mobilization/exclusion protein"
                     /protein_id="WP_021243037.1"
                     /translation="MTELEKQLLSVLEQLQQDYSQRLDEWESAFAEWRSMCGLMQRENA
                     VLNERVSDLSTQVLSLSEQLRRLSGN"
                     /name="MbeD family mobilization/exclusion protein"
     gene            2330..2512
                     /locus_tag="QZJ72_RS00025"
     CDS             2330..2512
                     /locus_tag="QZJ72_RS00025"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_162997186.1"
                     /translation="MPVNACGAALVLPRLIDASFSAGAGGFAVNMNIFLLFSPLKMAGF
                     LRVKSGAGHHAGMAE"
                     /name="hypothetical protein"
     gene            2611..3915
                     /locus_tag="QZJ72_RS00030"
     CDS             2611..3915
                     /locus_tag="QZJ72_RS00030"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002437803.1"
                     /GO_process="GO:0006935 - chemotaxis [Evidence IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PAS domain-containing methyl-accepting chemotaxis
                     protein"
                     /protein_id="WP_007899670.1"
                     /translation="MFSLKNMFSLNLQRSAISYDAICQNKPVIEFSPEGVINKASPLFL
                     STMGYRADEIIGHHHRIFCPPSLVSSPEYSQFWQRLARGESFSGKYLRLAKGNRSVWLE
                     ASYIPVSDRRGRVIRVIKIAADISERVHSALEQEAVVNAINRSMAIITFNPEGIVLEAN
                     ENFVNATGYKRDEIIGKHHRLFCAETLYKSDEYRHFWESLNQGEFFSGLFPRLNRQGDP
                     LWFRATYNPVFNSDGQLYKIVKFATDVTADVLRNQREQEAAVHAWDMAVQTRESAQNGA
                     NVIENSILMIDRIAQGMGAVSTDISRLNNQSESIDDMVETIRKFAMQTRLIALNAAIEA
                     ARAGASGRSFAVVAAEVRNLAASVSSATEEIEQVVASNSQLAKDVLCGIENSLMNTREG
                     VTLMREAGEVMTSIQRNAAGVETAVKDVAISVKAG"
                     /name="PAS domain-containing methyl-accepting chemotaxis
                     protein"
     Typing          4637..4809
                     /name="MOBP"
                     /typing="oriT"
                     /tool="MOB-suite"
                     /identity="98.851"
                     /coverage="100.0"
                     /evalue="1.98e-82"
     Typing          complement(4166..4712)
                     /name="rep_cluster_2335"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="94.727"
                     /coverage="90.0"
                     /evalue="0.0"
     Typing          315..1813
                     /name="MOBP"
                     /typing="relaxase"
                     /tool="MOB-suite"
                     /identity="90.297"
                     /coverage="100.0"
                     /evalue="0.0"
ORIGIN
        1 atgctcacca tgtgggtgac ggaggacgag caccggcggc tgcttgagcg ctgtgacggc
       61 aggcagctgg cggcgtggat gcggcagacc tgcctggacg aaaaacctgc gcgcaccgga
      121 aagctcccct caatctcgcc ggcgctgctg cgccagcttg ccggcatggg gaataacctg
      181 aaccagatag cccgccgtgt taacgccggc ggcggcaccg gccatgacag ggtgcagatt
      241 gtggcggcgc tgatggccat cgatgccggg cttgagcggc tgcggcacgc cgttcttgag
      301 aaaggaacgg acgatgatcg ttaaatttca tccacgtggc cgcggcggtg gcgccgggcc
      361 ggtggactat ctgctgggta aagaccggca gcgtgaaggc gccagcgtcc tgcaggggaa
      421 gccggaagaa gtccgggagc tgattgacgc gtcgccttac gtgaagaaat acacctccgg
      481 cgtcctgtcg tttgcggagg ccgatctgcc tcccggccag cgggaaaaac tgatggccag
      541 cttcgagcgg gttctgatgc ccggacttga taaagatcag tacagcattc tgtgggtgga
      601 gcacgaggac aaggggcgtc tggagctgaa ctttctgatc cccaataccg agctgctgac
      661 cggcaggcgg ctccagccgt actacgaccg cgccgaccgg ccgcgtatcg atgcctggca
      721 gaccatcgtg aacggcagac tggggctgca cgatccgaac gcgccggaaa accgccgggc
      781 gctggtcacg ccggccggac tgccgaaaac gaagcaggaa gccgcagaag ccatcacccg
      841 tggactgctg agcttagcct cgtccgggga gctgaaaagc cgtcaggacg tcactgaggc
      901 tcttgaaggt gcaggttttg aggtggtgcg tacaacgaaa agcagtatca gcattgccga
      961 ccctgacggg gggcgaaaca tccgactgaa gggagccatc tatgagcagt cttttaacgc
     1021 tggcgaagga cttagagcag caatcgaaag cgcagcagaa gagtaccggc gagatgctga
     1081 aagccgcatt cagcgagcac gagcagtctg tcagagcgga actgaacgca agcgcgagga
     1141 gaatcagcga cgccatcagc gcccacgagc agagtatgag cgaggcgatg gagaaaaacc
     1201 ggcggagcgt gttgctgacg gccgggagga catggctcac catcctgatg gtgtcagcgc
     1261 tgctgatcgc cacgagcggg agcattctgt ggtggcaggg gcagcagata accgacaatt
     1321 acacgcatct tcgtcagcag gaagataccc tggcgaaaat gaccgcccgg acgtggggag
     1381 tgcgctatca ggagagcagc gacggccgga ggtttcttat cctgccgccg gggatgcaag
     1441 ccgaagccat cccctacgac gggacgacat ggatccgcct gaaacaggag tagcggaaaa
     1501 tgacagagct ggaaaagcag ttgctgagcg tattagagca gctacagcag gactactcgc
     1561 aaaggctgga cgaatgggag agcgccttcg cggaatggcg gagcatgtgt ggtcttatgc
     1621 aacgggagaa cgcggtgctg aacgagcgcg tgtcggactt gagcacgcag gtgctgagtt
     1681 taagcgagca gctgcgccgc ttgtccggga actgaatgcc atcgaggaga aggctgcact
     1741 ggagtatcag cgtcagaacg agctggagct gacgctccga cagaagcaga agagtttcga
     1801 tggtccgaag atgaggtgac agcccgcacg aagaagggct catcgcgttc ctgctaaata
     1861 ggctgactac cggaatggta gtgacttatc ccggaggaag tgatgaaaat tctcaacgtt
     1921 attgaagccc tgctgaactg tttttacctg gtgatggagc tgtgtgagtt gccggagagg
     1981 catttgccgg tttttaaggc gttcgcgctg attttagtgt gactttacgc tgcatgcatc
     2041 tggctgcatg actatgcatc agtgtaatat ccagcggctg cgtttttggt gttttttcgt
     2101 catgtctgtc gccactttct cgcgtctggc accggaaacg cagccaaccc cgtttctgcg
     2161 gtgcgggcaa ggggtgttat gttaaaagcc gaggtctggc ggatacggaa aaaattatgc
     2221 ccgcggcaat ccggccgata cttaaattat ccttcacaaa ggatgtgctg cgatccaggc
     2281 agttgagtgt tttccggctc ccggatggga gccatttttt tgccttctga tgcctgttaa
     2341 tgcatgcgga gctgcgctgg ttcttccaag attgatagac gccagcttct ctgctggagc
     2401 cggcggattt gccgtaaata tgaacatttt cttattgttc agcccgctaa agatggcggg
     2461 ttttttacgc gtgaaatccg gagccggaca tcatgccggc atggctgaat agcgggcttt
     2521 ttcccgccct gtcgcagtaa tatataacgc tacataagga gtagccgata accatggcag
     2581 tacttacatt atccgggcaa tctgattcat atgttttcac ttaaaaatat gttctccctg
     2641 aacctccagc gatcagccat ttcgtatgac gcaatttgtc agaataagcc tgtcattgag
     2701 ttcagtccgg agggggtgat aaataaagcc agcccgcttt ttctctccac tatggggtac
     2761 agggctgatg aaataatcgg tcaccaccat cgtatattct gcccgccctc gctggtaagt
     2821 tcaccggaat acagccagtt ctggcagcgc cttgccaggg gagaaagctt tagtggcaag
     2881 tacctgcggc tggcaaaggg aaatcgttcc gtatggcttg aagccagtta tatccccgtt
     2941 tctgacaggc gcggccgtgt tatcagagtc attaaaattg ctgccgatat ttctgagcgc
     3001 gtgcattctg ctcttgagca ggaagcagtt gtaaatgcca taaaccgttc tatggccatc
     3061 atcaccttca atcctgaagg gatcgtgctt gaagcaaatg aaaatttcgt caatgccact
     3121 ggctataagc gggatgaaat cataggtaag catcatcgtc tgttctgtgc cgagacgctt
     3181 tacaaaagtg atgaataccg acatttctgg gagagtctga atcaaggtga gtttttttct
     3241 ggtctgtttc cacgccttaa ccgtcaggga gaccctctgt ggttccgtgc aacttataac
     3301 cctgtcttta acagtgatgg gcagctttat aaaattgtga aattcgctac agatgttacg
     3361 gctgatgtcc tgcgaaacca gagagagcaa gaggctgctg tgcatgcatg ggatatggcc
     3421 gtgcagaccc gagaaagtgc gcagaacggt gccaatgtta ttgaaaatag catccttatg
     3481 attgacagaa ttgcgcaggg gatgggggct gtctccaccg atatctcacg gctcaacaat
     3541 cagtctgaaa gtattgacga tatggtggaa accatccgga agtttgccat gcagacaaga
     3601 cttattgcac tgaatgccgc gattgaagca gcaagggctg gcgcatccgg aagaagtttt
     3661 gcggttgttg ccgcagaagt gcgtaatctt gcggcgagcg tcagtagcgc gactgaagaa
     3721 attgagcaag tcgtggccag caatagtcaa ctggccaagg atgttctctg tggcattgaa
     3781 aacagcctga tgaacactcg ggaaggggtt acactcatgc gcgaagcggg tgaagttatg
     3841 accagcattc agaggaatgc tgcaggggtt gagactgcgg ttaaggatgt cgccatttca
     3901 gttaaagccg gataggccat ggtgcatatc cccatatctg tcgaacatca cagatgatct
     3961 tcttgagatc ctttccgttg cgtcgtaatc tcttgctctg aaaacgaaaa aaccacccgg
     4021 caaggtggct ttttcgaagg ttcgcaagag ttgacgctct tttgaaccgc ggtaactggc
     4081 ttggaggagc acagtcacca aaactgtcct ttcagtgtag ccttatcgca cccgaaactt
     4141 caagactctc ctcctctaaa cctgttacca gtggctgctg ccagtggcgc tttgtcgtgt
     4201 ttttccggat tggactcaag ttgatagtta ccggataagg cgcagcggtc ggactgaacg
     4261 gggggttcgt gcatacagtc cagcttggag cgaactgcct tcccggaact gagtgtcagg
     4321 cgtggaatga gacaaacgcg gccataacag cggaatgaca ccggtaaacc gaaaggcagg
     4381 aacaggagag cgcacgaggg agccaccagg gggaaacgcc tggtatcttt atagtcctgt
     4441 cgggtttcgc caccactgat ttgagcgtca gatttcgtga tgcttgtcag gggggcggag
     4501 cctatggaaa aacggcttcg ccgtggcctt atcgcttccc tgttaagctt ctttctggca
     4561 tctcccagga aatttccgcc ccgcctgtaa gccggtaccg ctcgccgcag ccgaacgacc
     4621 gagcgcagcg agtcagtgag cgaggaagcg gaatatatcc tgtatcacat attctgctga
     4681 cgctccgctg ctgcattttt ctcctgccac atgaagcact tcactgatat tcgcatccgt
     4741 gccaatatag taagccagta tacactccgc tagcgctacg tgactggttc agggctgcgc
     4801 cccgaaaccc gccaaaagcc tgacgcgcct gcggcttgtc caaccccgcg ccgaccggga
     4861 aaggctttcc cgcccgtccc ggcgttatca ggaggccggt ttgtcagaga aacggaacaa
     4921 g
//
