LOCUS       NZ_OP927726             3830 bp    DNA     circular CON 10-JUL-2023
DEFINITION  Salmonella sp. strain ZLQ plasmid unnamed1, complete sequence.
ACCESSION   NZ_OP927726
VERSION     NZ_OP927726.1
DBLINK      BioProject: PRJNA224116
KEYWORDS    RefSeq.
SOURCE      Salmonella sp
  ORGANISM  Salmonella sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 3830)
  AUTHORS   Liu,H.
  TITLE     Study on pathogenic genes and transmission mechanism of non-typhoid
            Salmonella
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 3830)
  AUTHORS   Liu,H.
  TITLE     Direct Submission
  JOURNAL   Submitted (29-NOV-2022) Clinical Laboratory, The Affiliated People
            Hospital of Jiangsu University, No. 8 Dianli Road, Zhenjiang,
            Jiangsu 212002, China
COMMENT     ##Assembly-Data-START##
            Assembly Method              :: HGAP v. v4.0; CANU v. v1.7.1
            Assembly Name                :: Plasmid of salmonella
            Sequencing Technology        :: Illumina; Oxford Nanopore ONT
            ##Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider          :: NCBI RefSeq
            Annotation Date              :: 07/10/2023 06:49:15
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision :: 6.5
            Features Annotated           :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                :: 3
            CDSs (total)                 :: 3
            Genes (coding)               :: 3
            CDSs (with protein)          :: 3
            Genes (RNA)                  :: 0
            tRNAs                        :: 0
            ncRNAs                       :: 0
            Pseudo Genes (total)         :: 0
            CDSs (without protein)       :: 0
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            OP927726.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..3830
                     /organism="Salmonella sp."
                     /mol_type="genomic DNA"
                     /strain="ZLQ"
                     /isolation_source="32.21 N 119.45 E"
                     /db_xref="taxon:599"
                     /plasmid="unnamed1"
                     /geo_loc_name="China"
     gene            1..1905
                     /locus_tag="QZJ64_RS00005"
     CDS             1..1905
                     /locus_tag="QZJ64_RS00005"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003839290.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methyl-accepting chemotaxis protein"
                     /protein_id="WP_052895204.1"
                     /translation="MSWAYRISMQMKLFIALFPLLLALVWFAGSGIVSRINTEQQMNTI
                     GQLTTLARSAGDVVHQLQSERGMSAGFIGARGQKFRDDLAAQRQLTDKVLATFKRLLTD
                     TNKDLLQGNIAAPLKTFNESIQFLDSTRTAISELTIDSPKASQFYTQTISDVLKFVGGM
                     GHLSTSGSMVNELAAYYSLLNLKEQAGVERALLSNIFSMDRFDDGQFSMFSDVVGQQDA
                     WLTAARSFSTPVQAAELDKSLQSAEATRALELRETAFNKAAEGGFGVNPTDWFNLQTQR
                     IETLQKVENRAVDALQEHAALLAHNARVDWQSFLVISLVALLIAIAFAVMVARSIQQQL
                     NGTLKTIAEMDGDLTRRLDVPGSDELSALNRAYNQAIENIQHIVQEIKSGAVVLRSASS
                     DIAAGNQDLAQRTDEQAASIVETAASMEQISTAITQTADNASEAERLIHSMERDVLEAN
                     RVSNEASQSMAEIRSSSEQISQIVASIDEISFQTNLLALNAAVEAARAGELGKGFAVVA
                     TEVRNLSQRCAREASQIRELINQNMDKIGEGVARVTASGTALKAAAENTGRMKQYVSDI
                     ARAANEQSLGVSQVHQALNQLEQVTQQNAALVSQAASASQMLDGQSEAMSTLVDRFIV"
                     /name="methyl-accepting chemotaxis protein"
     gene            2195..2383
                     /locus_tag="QZJ64_RS00010"
     CDS             2195..2383
                     /locus_tag="QZJ64_RS00010"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000165998.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Rop family plasmid primer RNA-binding protein"
                     /protein_id="WP_000165998.1"
                     /translation="MTKQESAALNMAKFIRAQSLLLLEKLDVLDLDDEAADCERMHEQA
                     EALYQKLSARFGIQDGE"
                     /name="Rop family plasmid primer RNA-binding protein"
     gene            complement(2431..2658)
                     /locus_tag="QZJ64_RS00015"
     CDS             complement(2431..2658)
                     /locus_tag="QZJ64_RS00015"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001046776.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_206659768.1"
                     /translation="MFGFSPGELMNLCPDERLLFVRMISAMLRRSGGDAGAVMFEAYRH
                     IVSDTNQARRSCMLDLLESVRHDYVHGGYT"
                     /name="hypothetical protein"
     Typing          complement(2842..3014)
                     /name="MOBP"
                     /typing="oriT"
                     /tool="MOB-suite"
                     /identity="91.379"
                     /coverage="100.0"
                     /evalue="9.47e-61"
     Typing          2939..3523
                     /name="rep_cluster_2335"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="91.709"
                     /coverage="97.0"
                     /evalue="0.0"
ORIGIN
        1 atgtcatggg cttatcgtat ttcaatgcaa atgaagttgt ttattgcatt attcccgcta
       61 ctgcttgcct tggtctggtt cgccggttcg ggtattgtca gccgtatcaa taccgaacag
      121 cagatgaaca ccattggaca gctcaccacg ctcgcccgca gcgcgggtga tgtggtgcat
      181 caactccaga gcgaacgtgg aatgagcgct ggatttatcg gcgcgcgcgg ccaaaagttt
      241 cgcgatgact tagctgccca gcggcagtta accgacaagg tgctggcaac atttaagcgg
      301 ttgctgaccg atacgaataa ggatttactc cagggaaata ttgccgcccc cctgaaaacg
      361 tttaatgaaa gtattcagtt tctcgactca acccgtaccg ccatcagcga attaactatc
      421 gattcaccaa aagcgagtca gttctatacc caaaccatct ctgacgtgct gaagtttgtc
      481 ggcgggatgg ggcatttaag cacctcaggc tcgatggtga acgaactggc ggcttattat
      541 agtctcttga atttgaagga gcaggctggt gtagaacgtg cgctgctgtc caatatcttc
      601 tcgatggatc gctttgacga cggccagttc agcatgttta gcgatgtggt aggccagcag
      661 gatgcctggc tgacggcagc tcgcagcttt agcacacctg tgcaggcggc tgagctggac
      721 aaatctcttc agtccgctga agcaactcgt gctcttgaac tgcgggagac ggcttttaat
      781 aaagccgccg aaggcggatt tggagtcaac ccgactgact ggtttaacct tcagacccag
      841 cgtattgaaa cgctgcaaaa ggtggaaaat cgcgcggtgg atgccttgca ggaacatgct
      901 gcgctgcttg cccacaatgc ccgtgtcgac tggcagtcct tcctggtaat cagcctggtt
      961 gccctactga ttgctatcgc ctttgcggtg atggtggcac gcagtatcca gcagcaactg
     1021 aacggtacgc tgaaaaccat cgcagagatg gacggcgacc tgacacgtcg tcttgacgtc
     1081 cccggcagcg acgagctctc agccctgaac cgtgcctata accaagcgat tgagaatatt
     1141 cagcatatcg tgcaagaaat taagtccggt gcggtggtgt tgcgtagcgc cagtagtgat
     1201 atcgctgccg gtaatcagga tctggcccag cgtacggatg aacaggcggc atcgattgtg
     1261 gaaacggccg ccagcatgga gcagatttct actgcgatca cccagaccgc cgataacgcc
     1321 agcgaggcgg agcgtctgat acattcgatg gagcgggacg tactggaagc taatcgcgtc
     1381 tctaacgagg ccagtcagag catggcggaa attcgttctt ccagcgagca gatttcccag
     1441 attgttgcgt caattgatga gatttctttc cagaccaact tgctggcgct taacgccgcc
     1501 gttgaagcgg cacgtgccgg tgagcttggc aaaggctttg cggtagtggc gacggaggtg
     1561 cgtaaccttt cccagcgctg tgcacgagaa gccagtcaga tccgtgagct gattaaccag
     1621 aatatggata agattggcga aggggtagca cgagtcaccg cgtccggcac cgcgctgaaa
     1681 gcagcggcgg aaaataccgg gcggatgaaa cagtacgtga gcgatattgc ccgtgcggcg
     1741 aatgagcagt cgcttggcgt gtcgcaggtg catcaggcac tgaatcagct ggagcaggtc
     1801 actcagcaaa acgcagcgct ggtctctcag gcggcgagcg ccagccagat gctggacggc
     1861 cagtctgaag cgatgtccac gctggtcgat cgctttattg tctgatactg ccgttcagca
     1921 tccggtcttg ataacttaca atcagaaaaa accgcctaaa aggcggcttt tttatgcctg
     1981 caaataacta ggatttacca taacatctgt tgcgtgcacc gcctgagagg ctctgagagc
     2041 gtttctgagg actccgacct gaaacataca cctttctgtg cccatatcga gaaaaaacgc
     2101 ccctgatgat ttctgcgtac ctgcatggct atgcactcaa gtgaatgaag taagatttca
     2161 gtctgcgatc accataaaac cgggaaaaag ccgtatgaca aaacaggaat cagccgcact
     2221 gaacatggca aaatttatcc gggcgcagtc gctgctgctg ctcgaaaaac tcgacgtgct
     2281 cgatcttgat gacgaggcag ccgactgtga gcgaatgcac gaacaggcag aagcgcttta
     2341 tcagaagctg agcgcacgct tcggtataca ggacggcgaa taaagagacg aaaagaacgc
     2401 tcacttagac gaaaagcgta tccagggcaa ctatgtatat ccaccgtgta catagtcatg
     2461 cctgacgctt tcgagcaggt cgagcatgca ggaacgacga gcttgattgg tatcggacac
     2521 aatatggcga tacgcctcaa acataacagc acccgcatca ccgcccgaac ggcgaagcat
     2581 agcggaaatc atccgcacaa agagcagacg ttcatcgggg caaaggttca taagttctcc
     2641 tggtgaaaaa ccaaacatga agcacccatc tattaacgtc agctgtgaac gcttcattac
     2701 gcttcattaa aataggtaaa cccgggaaaa agatccaaac gttaacatca caggtaaaca
     2761 gaaacgtcgg gtcgatcggg aaattctttc ccggacggcg cggggttggg caagccgcag
     2821 gcgcgtcagt gcttttagcg ggtgtcgggg cgcagccctg aaccagtcac gtagcgctag
     2881 cggagtgtat actggcttat tatgtaggca cgggtgcggg aatcagtgaa gtgcttcatg
     2941 tggcaggagg aaaatgcagc agcagagcgt aagcggaata tatgagacag gagatattcc
     3001 gcttcctcgc tcactgactc gctgcgctcg gtcgttcggc tgcggcgagc ggtgcgggat
     3061 tacgaatggg gcggaaattt cctgggagat gccaggaaga aacttaacag ggaaacggta
     3121 aggccgcggc gaagccgttt ttccataggc tccgcccccc tgacaagcat cacgaaatct
     3181 gacgctcaaa tcagtggcgg cgaaacccga caggactata aagatcccag gcgtttcccc
     3241 ctggtagctc cctcgtgcgc tctcctgttc ctgcctttcg gtttaccggt gtcattccgc
     3301 tgttatggcc gcgtttatct cattccacgc ctgacactca gttccgggaa ggcagttcgc
     3361 tccaagctgg actgtatgca cgaacccccc gttcagtccg actgctgcgc cttttccggt
     3421 aactatcgtc ttgagtccaa cccggaaaga cacgaaaaat cgccactggc agcggccact
     3481 ggtaaacagg atgtgcgaga gatgtatcga gagttcttga agtagtggcc tgactgaggc
     3541 tacactagaa ggacaaattt ggtgacatgt ctcgcacaag actgttacca cggttagaga
     3601 atctgccagg attatctaac cttcgaaaaa ccacctgcaa gggtggtttt ttcgtttaca
     3661 gagcaagaga ttacgacgat cgtcaaagga tctcaagaag atcctttatg gattgctacc
     3721 agcgccactg ccgaatgtgg tgcccgttcc cccaacaata aactataaag tttatgcatg
     3781 tatctaccga tactcctgcg atccctcaag aaagtaagga aagtatcgat
//
