LOCUS       NZ_OP242288             1541 bp    DNA     circular CON 23-MAR-2024
DEFINITION  Escherichia coli strain LA170 plasmid pLAO79, complete sequence.
ACCESSION   NZ_OP242288
VERSION     NZ_OP242288.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN29363357
KEYWORDS    RefSeq.
SOURCE      Escherichia coli
  ORGANISM  Escherichia coli
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Escherichia.
REFERENCE   1  (bases 1 to 1541)
  AUTHORS   Snaith,A.E., Dunn,S.J., Moran,R.A. and McNally,A.
  TITLE     Plasmids from ESBL+ E. coli from PDR Laos
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 1541)
  AUTHORS   Snaith,A.E., Dunn,S.J., Moran,R.A. and McNally,A.
  TITLE     Direct Submission
  JOURNAL   Submitted (08-AUG-2022) Institute of Microbiology and Infection,
            University of Birmingham, University of Birmingham, Birmingham B15
            2TT, United Kingdom
COMMENT     ##Assembly-Data-START##
            Assembly Method              :: Unicycler v. 0.4.7
            Sequencing Technology        :: Oxford Nanopore
            ##Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider          :: NCBI RefSeq
            Annotation Name              :: GCF_028600725.1-RS_2024_03_23
            Annotation Date              :: 03/23/2024 03:19:45
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision :: 6.7
            Features Annotated           :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                :: 1
            CDSs (total)                 :: 1
            Genes (coding)               :: 1
            CDSs (with protein)          :: 1
            Genes (RNA)                  :: 0
            tRNAs                        :: 0
            ncRNAs                       :: 0
            Pseudo Genes (total)         :: 0
            CDSs (without protein)       :: 0
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            OP242288.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1541
                     /organism="Escherichia coli"
                     /mol_type="genomic DNA"
                     /strain="LA170"
                     /isolation_source="Stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:562"
                     /plasmid="pLAO79"
     gene            832..1350
                     /locus_tag="PUP24_RS00005"
     CDS             832..1350
                     /locus_tag="PUP24_RS00005"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_252382951.1"
                     /translation="MQTRNKCLQKQVFSGFLGDCAAGKFLKNTEGSCKLNELVSVAANN
                     RLHRNIEEVENLNEPEEARLMAGFFRSTRLQRNKQVQKRNLSAIAHQIYKKRTFTRPNS
                     QKRTRNVFTRLNNYSRTRSADGFDGSTARTGQNGKLSHQKTVNGTRNFFAGREALAGCR
                     GAALTRWQL"
                     /name="hypothetical protein"
     Typing          complement(202..282)
                     /name="MOBP"
                     /typing="oriT"
                     /tool="MOB-suite"
                     /identity="92.683"
                     /coverage="96.0"
                     /evalue="2.04e-24"
     Typing          1312..1399
                     /name="MOBP"
                     /typing="oriT"
                     /tool="MOB-suite"
                     /identity="96.629"
                     /coverage="96.0"
                     /evalue="2.61e-33"
ORIGIN
        1 cagctacgca aaaatttcgg cgaccggaca gcaaatcatt ttgccgtttt cgtgacgcag
       61 ccgttccgcg caatcgacaa actggcagta cagaaaactc acgaagtgca cgaagtgcgc
      121 acttatacaa acttcacttc gtttcgtttg tcgtgcggtc tgcgacgcgc aaaaaaaccg
      181 agaaacggcg ggaattttct ggacaggatg tgtaattgta ataccgtcac acgcgacgct
      241 atcacaatta ccacctggtc agggcatccg ccccgacacc ccgcatcagt gcgtacgtgc
      301 tcaatgtggt ttccggttca cttccgcttc ctcgcccact cgctcactac gttcggtcgc
      361 tggggctgcg gcgagcggag tgatctctct ctcgatcctg tagggatctt tttttttttt
      421 gcggtagagc agtctgtgat tgcggtgcgg cagggggctg tgccatatgc tggttggtga
      481 gcgttctgag gaaccggcaa actccccccc caccccgcaa agggcgtaaa agggggtaag
      541 agttttgccc gagcgatatg ctggccggag ccgcgcccat cgtcaccgga acggacctat
      601 ggtagaacgt ccgtttgcat gttcccgcgt ctacgccgcg acatttcgcc caacatgctg
      661 gcactggtcc cagaaccgcg cccaagggca aaaacccaat ataagcgcat tacattcaac
      721 cacttgtgcc actccccagg cgtccgctca aaaatgaagt atcttccccg gtagcggaat
      781 tctcacgcgt gcggtcgccg tcgtcactga ccccccaacc gcaaacggcc tttgcaaaca
      841 cgcaacaagt gcctgcaaaa acaggttttt tcgggattcc tgggagactg tgcggcggga
      901 aaattcttga agaatacaga aggttcatgc aaactgaatg aactggtttc tgtcgctgcg
      961 aacaacagac tccacaggaa cattgaggag gtcgaaaacc tcaatgaacc cgaagaagct
     1021 cgcctaatgg cgggcttttt tcgttctact cgccttcaac gaaacaagca agtccaaaaa
     1081 cgcaatttga gcgcgatagc acatcaaatc tacaaaaaac gcactttcac ccgaccaaac
     1141 agccaaaaac gcaccagaaa cgtttttacg cgcctgaata actattcacg cacacgatcg
     1201 gcggacggtt tcgacggttc gacggcgcga acgggtcaaa acggcaaact ttctcatcag
     1261 aaaacggtga acgggacgcg gaattttttc gcgggccgtg aggcgttggc ggggtgtcgg
     1321 ggcgcagccc tgaccagatg gcaattgtga tagcgtcgcg tgtgacggta ttacaattgc
     1381 acatcctgtc ccgatttttt cgccagaacg ctggcagagc atcggcagtt ctgcgccgtt
     1441 aacccctcca caggagcgca cagtttcccg acgaaggaga gaaactacta agtgcgcatc
     1501 cgcacttaac gcgcggatga tttttggcac cgcagccacc a
//
