LOCUS       NZ_OP242245             2138 bp    DNA     circular CON 23-MAR-2024
DEFINITION  Escherichia coli strain LA030 plasmid pLAO15, complete sequence.
ACCESSION   NZ_OP242245
VERSION     NZ_OP242245.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN29363336
KEYWORDS    RefSeq.
SOURCE      Escherichia coli
  ORGANISM  Escherichia coli
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Escherichia.
REFERENCE   1  (bases 1 to 2138)
  AUTHORS   Snaith,A.E., Dunn,S.J., Moran,R.A. and McNally,A.
  TITLE     Plasmids from ESBL+ E. coli from PDR Laos
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2138)
  AUTHORS   Snaith,A.E., Dunn,S.J., Moran,R.A. and McNally,A.
  TITLE     Direct Submission
  JOURNAL   Submitted (05-AUG-2022) Institute of Microbiology and Infection,
            University of Birmingham, University of Birmingham, Birmingham B15
            2TT, United Kingdom
COMMENT     ##Assembly-Data-START##
            Assembly Method              :: Unicycler v. 0.4.7
            Sequencing Technology        :: Oxford Nanopore
            ##Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider          :: NCBI RefSeq
            Annotation Name              :: GCF_028600295.1-RS_2024_03_23
            Annotation Date              :: 03/23/2024 03:09:23
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision :: 6.7
            Features Annotated           :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                :: 1
            CDSs (total)                 :: 1
            Genes (coding)               :: 1
            CDSs (with protein)          :: 1
            Genes (RNA)                  :: 0
            tRNAs                        :: 0
            ncRNAs                       :: 0
            Pseudo Genes (total)         :: 0
            CDSs (without protein)       :: 0
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            OP242245.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..2138
                     /organism="Escherichia coli"
                     /mol_type="genomic DNA"
                     /strain="LA030"
                     /isolation_source="Stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:562"
                     /plasmid="pLAO15"
     gene            783..1778
                     /locus_tag="PUP00_RS00005"
                     /old_locus_tag="DJCMOMJB_00001"
     CDS             783..1778
                     /locus_tag="PUP00_RS00005"
                     /old_locus_tag="DJCMOMJB_00001"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020240588.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein rep"
                     /protein_id="WP_038989441.1"
                     /translation="MQNPKLKNLTDYSPDDKPWDVHKSQSDDVGGIYLRAAEFEAYAAR
                     MRDCGGLLRFGWSTLKDTGETRLRLREAHFCRVRHCPVCQWRRSLMWQARFYQSLPKIV
                     ADYPDARWMFLTLTVRNCAIEDLGDTLTAMNAAFQRMKVRKEFKSVQGWIRTTEVTRGR
                     DGSAHPHFHTLMMVPPGMLNGHDYVKHYRWVELWRDCLRVDYDPNVDVRAVKPRKPKDG
                     QTLACATAELVRGAVAETLKYSTKPADMVADPDWFLELTRQTHKRRFVATGGALKDVLK
                     LEQETDQDMVIGDDISDGEDDGSRLAFGWDSTPRKYVRLPERDKFKSDPD"
                     /name="protein rep"
     Typing          complement(1499..1689)
                     /name="ColpVC"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="84.375"
                     /coverage="98.0"
                     /evalue="1.4200000000000001e-44"
ORIGIN
        1 tggtgagcca tcgccctgta aagccgcttt ttaccccctt caaggcgttg cctgtggggt
       61 aggtgcgtaa gccctgccct acaggtgatg ccgtgggggt attttcgttt tgctcggtat
      121 gccttattcg tttaaatccg ccatcaggag tatgcggggt aaagtcgtgc ggccgcgatg
      181 aggaacgggg attgcccccg cagctctgcg aggaggcaca cgccgttcag aatcggggtc
      241 cactctgttt aatagtggac tcttgttgcg atttgcaacg gaaacagccg cgtgcagtga
      301 atgtaatact gcacgtttgt ctcaatctga catttctcag gggggggcga tttaacgtgg
      361 tttgcttaat ttttgagctt acgaatgctt gagtgtttga gtgcctgaat gctgcttttg
      421 ggggttggtt tttcggccct gaaaggggcg aaatccttgt atttatactt aagggataac
      481 tctaggattc aaattcgctt ccagcccttg tgccgcaagg cctgagagcc aatttgctcg
      541 aaaatggttt tgtgagtatg atttctgaca ggtgatcgtg tccgcgaact aatttttgat
      601 tacttggggt ggttcccaag accttactta ctgacacgat gatatgagaa acccctgcaa
      661 gtgctaccaa cacttcaggg gcgcgatcac ctggctaaat acggtttgaa atcgactcgc
      721 aacaggtgat acggaaatga taacacaccc ttccagcgcc tgcccatatt ggagcaggtg
      781 ctatgcagaa tcctaagcta aagaacctta ctgactacag tcccgacgat aagccgtggg
      841 acgttcacaa gtcgcaatct gatgatgttg gcggtatcta tctgcgtgca gctgaatttg
      901 aggcgtatgc ggctcgtatg cgcgattgtg gcggcttgct gcgttttggc tggtctaccc
      961 ttaaagacac cggagaaacg cgtttacggc ttcgtgaggc gcatttctgc cgcgttcgtc
     1021 actgccctgt ctgccagtgg aggcgttccc tgatgtggca agcccgtttt tatcagtctc
     1081 tgccgaaaat cgtcgctgat taccctgatg cccgctggat gttcctcacg ctcaccgttc
     1141 gcaactgtgc gatcgaggat ctcggggaca cgcttactgc catgaatgcc gcattccagc
     1201 gcatgaaggt tcgcaaggaa tttaaatccg tacagggatg gattcgcacc acagaagtta
     1261 cccgcggtcg tgatggctct gcacaccccc actttcacac cctgatgatg gttcctcctg
     1321 ggatgctgaa cggtcatgac tacgttaagc actaccgctg ggttgaactc tggcgtgact
     1381 gcctgcgcgt tgattacgat cctaatgttg atgttcgggc agtgaaaccc cgcaagccta
     1441 aagatggcca gactctggca tgtgccactg ctgaactggt gcgcggtgcc gttgctgaaa
     1501 ccctgaaata ttcgacaaag ccggctgata tggttgccga cccggactgg ttcttagagc
     1561 tgacccggca gacgcataaa cgccgttttg ttgcgaccgg tggcgctctg aaagacgttc
     1621 tgaaactgga gcaggaaacg gatcaggaca tggtgatcgg ggatgatatt tccgatggtg
     1681 aagacgatgg ttcacgcctc gcctttggct gggattcgac gccaagaaaa tacgtccgtt
     1741 tgcctgaacg cgataagttt aaatcagatc ctgattaggg tgtcggggcc tgccctgacc
     1801 aggttgtttt tggatgccgc tgcgtgtggc ggtactccaa aaacacatct tgtccggtac
     1861 acagatttcc tttggcattc cttcgggttt ccctgagatt tccactctgc atacatacac
     1921 gcatacacga ataatcaacg gcagaattcg ggcaggatat gtaaagtggg accactttac
     1981 gcctgcctta ttcgcactct gctcaatgga atattaaatc tgacagcgtt cgccgccgtc
     2041 gaatcgtcaa cttctaaatc gggggatccc tttagggttc cgatttagtg gttgtacgac
     2101 tgcacccctc atacccttgt gatgggtgat ggttcaca
//
