LOCUS       NZ_OP113953             2690 bp    DNA     circular CON 10-MAR-2024
DEFINITION  Shigella sonnei strain SONNEI_074 plasmid pStv, complete sequence.
ACCESSION   NZ_OP113953
VERSION     NZ_OP113953.1
DBLINK      BioProject: PRJNA224116
KEYWORDS    RefSeq.
SOURCE      Shigella sonnei
  ORGANISM  Shigella sonnei
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 2690)
  AUTHORS   Bennett,R.J., De Silva,M.P., Bengtsson,R.J., Horburgh,M.J.,
            Blower,T.R. and Baker,K.S.
  TITLE     Temporal GWAS identifies a widely distributed adhesin contributing
            to pathogen success in Shigella spp
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2690)
  AUTHORS   Bennett,R.J.
  TITLE     Direct Submission
  JOURNAL   Submitted (28-JUL-2022) Department of Clinical Infection,
            Microbiology and Immunology, Institute of Infection, Veterinary and
            Ecological Sciences, Crown Street, Liverpool L697ZB, United Kingdom
COMMENT     ##Genome-Annotation-Data-START##
            Annotation Provider          :: NCBI RefSeq
            Annotation Date              :: 03/09/2024 02:28:14
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision :: 6.6
            Features Annotated           :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                :: 4
            CDSs (total)                 :: 4
            Genes (coding)               :: 4
            CDSs (with protein)          :: 4
            Genes (RNA)                  :: 0
            tRNAs                        :: 0
            ncRNAs                       :: 0
            Pseudo Genes (total)         :: 0
            CDSs (without protein)       :: 0
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            OP113953.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..2690
                     /organism="Shigella sonnei"
                     /mol_type="genomic DNA"
                     /strain="SONNEI_074"
                     /isolation_source="Clinical isolate"
                     /db_xref="taxon:624"
                     /plasmid="pStv"
     gene            complement(255..416)
                     /locus_tag="PRZ67_RS00005"
     CDS             complement(255..416)
                     /locus_tag="PRZ67_RS00005"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001318243.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="replication initiation protein"
                     /protein_id="WP_072007783.1"
                     /translation="MHEPPVQPDRCALSGNYRLESNPVRHELSPLAAATDNRIRGVRLE
                     VMRLLRLN"
                     /name="replication initiation protein"
     gene            complement(914..1108)
                     /locus_tag="PRZ67_RS00010"
     CDS             complement(914..1108)
                     /locus_tag="PRZ67_RS00010"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001041624.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Rop family plasmid primer RNA-binding protein"
                     /protein_id="WP_039059175.1"
                     /translation="MNKQQQTVLNMAGFIKSQSLTLLEKLDALDADEQAAMCEKLHEIA
                     EELQNSIQTRFEAESGTGV"
                     /name="Rop family plasmid primer RNA-binding protein"
     gene            1394..1717
                     /gene="mobA"
                     /locus_tag="PRZ67_RS00015"
     CDS             1394..1717
                     /gene="mobA"
                     /locus_tag="PRZ67_RS00015"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_052604.1"
                     /GO_process="GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="plasmid mobilization protein MobA"
                     /protein_id="WP_004988908.1"
                     /translation="MTKRSGSNTRRRAISRPVRLTAEEDQEIRKRAAECGKTVSGFLRA
                     AALGKNVNSLTDDRVLKEVMRLGALQKKLFIDGKRIGDREYAEVLIAITEYHRALLSRL
                     MAD"
                     /name="mobA"
     gene            complement(1943..2566)
                     /locus_tag="PRZ67_RS00020"
     CDS             complement(1943..2566)
                     /locus_tag="PRZ67_RS00020"
                     /inference="COORDINATES: protein motif:HMM:NF045398.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="putative adhesin"
                     /protein_id="WP_226342037.1"
                     /translation="MDVTSHRRLFQKDGIGLSQTGKATQLVIMSHGGWKEISHPQTLFT
                     RQKGDGWTVVPKNLRIDFYTKDNDFTKGLSVLSEVNKRHTEAQKGLTPSLNISKDDLKV
                     LANARNIPQSKLEEEMMSQAIYRKEYATSNEKIKNYALYYHEQAQNIIQRHQDGLGNKN
                     IDIAFITDKNHKKHLSDIFKVINESGVKYDVIHFGACRVNREEK"
                     /name="putative adhesin"
     Typing          1147..1385
                     /name="MOB_unknown"
                     /typing="oriT"
                     /tool="MOB-suite"
                     /identity="100.0"
                     /coverage="100.0"
                     /evalue="2.72e-122"
     Typing          complement(345..871)
                     /name="rep_cluster_2350"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="95.472"
                     /coverage="96.0"
                     /evalue="0.0"
     Typing          1395..1714
                     /name="MOBF"
                     /typing="relaxase"
                     /tool="MOB-suite"
                     /identity="97.196"
                     /coverage="100.0"
                     /evalue="7.599999999999999e-62"
ORIGIN
        1 gtgtttttta ttgttttttt tcttttgttt aagggtgtgt cggtgtaagt gtttatttta
       61 tgggttaaag taggatacca agtgtgaaaa aaaattaaag gttcttcttg agatcctttt
      121 tttctgcgcg taatctgctg cctgtaaacg aaaaaaccgc cctgcaaggc ggtttttcga
      181 aggttctcag agctaccaac tctttgagcc gaggtaactg gcttggagga gcgcagtcac
      241 caaaacttgt tctttcagtt tagccttaac aggcgcatga cttcaagtct tactcctcta
      301 attcggttat cagtggctgc tgccagtggc gataattcgt gtcttaccgg gttggactca
      361 agacgatagt taccggataa ggcgcagcgg tcgggctgaa cggggggttc gtgcacacag
      421 cccagcttgg agcgaacgac ctacaccggg ccgagatacc aacagcgtga gctatgagaa
      481 agcgccacgc ttcccgaagg gagaaaggcg gacaggtatc cggtaaacgg cagggtcgga
      541 acaggagagc gcacgaggga gcttccaggg ggaaacgcct ggtatcttta tagtcctgtc
      601 gggtttcgcc acctctgact tgagcgtcga tttttgtgat gctcgtcagg ggggcggagc
      661 ctatggaaaa acgccacctg cgcggccttt gtccctgcct tcggcttttt gctcacatgt
      721 tctttccggc gttatcccct gattctgtgg ataaccgcat taccgccttt gagtgagctg
      781 acaccgctcg ccgcagtcga acgaccgagc gtagcgagtc agtgagcgag gaagcggaag
      841 agcgccttat gtgacatttt ctccttacgc accggtatac cgttctgcat cctgtctgga
      901 gcaggataca ctgttatacc ccggtgccac tttccgcttc aaagcgtgtc tgtatgctgt
      961 tctggagttc ttccgcgatt tcgtgcagct tctcacacat ggcggcctgt tcgtcggcat
     1021 cgagtgcgtc cagcttttcg agcagcgtca ggctctggct ttttatgaat cccgccatgt
     1081 tgagtacggt ttgctgctgc ttgttcatct ttctgttttc tccgttctgt ctgtcatctg
     1141 cgttgtgtga ttatatcgcg taccactttt cgactgtttt accgccggta ttctgccgtc
     1201 tgacgcattg acgggtattt ctgcctgaca atactgtcac tgccaaaaaa actgccgtgc
     1261 ctttgtcggt aattcgaact tgctgacagg acaggatgtg taattgttat accgcgcata
     1321 catgcacgct attacaatta ccctggtcag ggcttcgccc cgacaccccg tgtcagatac
     1381 ggagccatgt tttatgacaa aacgaagtgg aagtaatacg cgcaggcggg ctatcagtcg
     1441 ccctgttcgt ctgacggcag aagaagacca ggaaatcaga aaaagggctg ctgaatgcgg
     1501 caagaccgtt tctggttttt tacgggcggc agctctcggt aagaacgtta actcactgac
     1561 tgatgatcgg gtgctgaaag aagttatgag actgggggcg ttacagaaaa aactctttat
     1621 cgacggcaag cgtatcgggg acagggagta tgcggaggtg ctgatcgcta ttacggagta
     1681 tcaccgtgcc ctgttatcca ggcttatggc agattagctt cccggggaga aaactgttga
     1741 aaacagacgg tatgaacacg gtaagctccc aaagtgatct ccattcgctt tcatgcatag
     1801 ctatgcagcg agctgaaaac gatcctgacg catccttcct gtttttccgg ggtaaaacat
     1861 ctatttttgt ggtgtctgcg tcagaatcgc gttcagcgcg tttcagtggt gcgtacaatt
     1921 aagggattat ggtaaatgat gattatttct cctctctatt tactcggcaa gcgccaaagt
     1981 gaattacatc atattttact cctgattcat ttattacttt aaatatgtca gaaaggtgct
     2041 tcttatgatt tttatcagtt ataaatgcta tatcaatatt tttgtttcct aagccatctt
     2101 gatgtctttg tataatattt tgggcttgtt catggtaata tagagcatag ttttttatct
     2161 tctcattact tgttgcgtat tcttttctat atatggcttg tgacatcatt tcttcttcta
     2221 attttgattg aggtatattg cgcgcgttcg ctagaacttt taggtcatct ttgcttatgt
     2281 ttagtgatgg tgttaaccct ttttgagctt cagtatggcg tttgtttacc tctgaaagaa
     2341 cgcttagtcc ctttgtgaag tcgttgtctt ttgtataaaa atcaattctt aggtttttgg
     2401 ggactacagt ccatccatcg cctttttgac gcgtgaatag tgtttgtgga tgggagatct
     2461 ctttccatcc accatgcgac ataatgacaa gttgtgttgc ttttcctgtt tggctcaatc
     2521 ctattccgtc tttctggaat aaacgacgat gacttgttac gtccatgttt ggtgatgggt
     2581 gtgtttttat atttttggat gatgttagaa ggtgatttct tattgttgat gatatgtttg
     2641 ttatgagatt cgaattgagt attttcattt gttaacaatc catttttgcg
//
