LOCUS       NZ_MW655532             3257 bp    DNA     circular CON 29-APR-2024
DEFINITION  Salmonella enterica subsp. enterica serovar Typhimurium strain ATCC
            14028 plasmid pUA1145, complete sequence.
ACCESSION   NZ_MW655532
VERSION     NZ_MW655532.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN20181722
KEYWORDS    RefSeq.
SOURCE      Salmonella enterica subsp. enterica serovar Typhimurium (Salmonella
            typhimurium)
  ORGANISM  Salmonella enterica subsp. enterica serovar Typhimurium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 3257)
  AUTHORS   Otero,J., Sanchez-Osuna,M., Lopez-Perez,J., Erill,I., Campoy,S.,
            Barbe,J., Cortes,P. and Llagostera,M.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-FEB-2021) Departament de Genetica i de Microbiologia,
            Universitat Autonoma de Barcelona, Facultat de Biociencies, Campus
            Bellaterra, Bellaterra (Cerdanyola del Valles), Barcelona 08193,
            Spain
COMMENT     ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_028864565.1-RS_2024_04_29
            Annotation Date                   :: 04/29/2024 05:09:03
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4
            CDSs (total)                      :: 4
            Genes (coding)                    :: 3
            CDSs (with protein)               :: 3
            Genes (RNA)                       :: 0
            tRNAs                             :: 0
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 1
            CDSs (without protein)            :: 1
            Pseudo Genes (ambiguous residues) :: 0 of 1
            Pseudo Genes (frameshifted)       :: 1 of 1
            Pseudo Genes (incomplete)         :: 0 of 1
            Pseudo Genes (internal stop)      :: 0 of 1
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            MW655532.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..3257
                     /organism="Salmonella enterica subsp. enterica serovar
                     Typhimurium"
                     /mol_type="genomic DNA"
                     /strain="ATCC 14028"
                     /serovar="Typhimurium"
                     /sub_species="enterica"
                     /db_xref="taxon:90371"
                     /plasmid="pUA1145"
                     /geo_loc_name="Spain: Catalonia"
                     /note="strain derived from Salmonella enterica subsp.
                     enterica serovar Typhimurium str. ATCC 14028"
     gene            1..195
                     /locus_tag="PYH77_RS00005"
                     /old_locus_tag="pUA1145_00001"
     CDS             1..195
                     /locus_tag="PYH77_RS00005"
                     /old_locus_tag="pUA1145_00001"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001041627.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Rop family plasmid primer RNA-binding protein"
                     /protein_id="WP_001041633.1"
                     /translation="MNKQQQTALNMARFIKSQSLTLLEKLDALDADEQAAMCERLHELA
                     EELQNSIQVRFETESETGT"
                     /name="Rop family plasmid primer RNA-binding protein"
     gene            849..961
                     /locus_tag="PYH77_RS00020"
                     /pseudo=""
     CDS             849..961
                     /locus_tag="PYH77_RS00020"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005761324.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo=""
                     /codon_start=1
                     /transl_table=11
                     /product="replication initiation protein"
                     /name="replication initiation protein"
     gene            complement(1192..1488)
                     /locus_tag="PYH77_RS00010"
                     /old_locus_tag="pUA1145_00002"
     CDS             complement(1192..1488)
                     /locus_tag="PYH77_RS00010"
                     /old_locus_tag="pUA1145_00002"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000609270.1"
                     /GO_function="GO:0003677 - DNA binding [Evidence IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HigA family addiction module antitoxin"
                     /protein_id="WP_000609270.1"
                     /translation="MINLVDPVHPGVFIREMFMEPFEISAADLSEKLHVSPSTLSRVLN
                     GKADLSVEMALRLSRVLGRSAESWINMQTQYSLNASRKSPNVIKELDELVPIF"
                     /name="HigA family addiction module antitoxin"
     gene            1833..2114
                     /locus_tag="PYH77_RS00015"
                     /old_locus_tag="pUA1145_00003"
     CDS             1833..2114
                     /locus_tag="PYH77_RS00015"
                     /old_locus_tag="pUA1145_00003"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000586174.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system RelE/ParE family
                     toxin"
                     /protein_id="WP_000586174.1"
                     /translation="MIINIKHKGLRKFAETGNNAGIPQQFTQRLKLILTALSTATNLQD
                     MMDLKALRCHPLKGDRQGEYSLEVNGNWRVVFKLEEPNVFDVDLEDYH"
                     /name="type II toxin-antitoxin system RelE/ParE family
                     toxin"
     Typing          complement(269..351)
                     /name="MOBP"
                     /typing="oriT"
                     /tool="MOB-suite"
                     /identity="100.0"
                     /coverage="100.0"
                     /evalue="3.79e-36"
     Typing          complement(2744..2999)
                     /name="MOBF"
                     /typing="oriT"
                     /tool="MOB-suite"
                     /identity="96.124"
                     /coverage="89.0"
                     /evalue="5.65e-115"
     Typing          complement(3124..3222)
                     /name="MOB_unknown"
                     /typing="oriT"
                     /tool="MOB-suite"
                     /identity="99.0"
                     /coverage="100.0"
                     /evalue="2.89e-43"
     Typing          364..918
                     /name="rep_cluster_2350"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="94.614"
                     /coverage="99.0"
                     /evalue="0.0"
ORIGIN
        1 gtgaacaaac agcaacaaac tgcgctgaat atggcgcgat ttatcaaaag ccagagcctg
       61 acactgcttg aaaaactgga tgctctggat gccgacgaac aggcggccat gtgcgaacga
      121 ctgcacgaac tcgcggaaga actccagaac agcatccagg ttcgctttga gaccgaaagt
      181 gaaacaggaa cataacgaag ctgacggagg cgctcacggc ttgtccgcga gcgttttcgg
      241 cagcagacaa gcccgccagg gcgcgtcagc gggtgtcggg gcgaagccct gacccagtca
      301 cgtagcgata gcggagtgta tactggctta actatgcggc atcagtgcag attgtatgaa
      361 aagtgcccca tgccgggtgt gaaattccgc acagatgcgt aaggagaaaa tgcgcgtcca
      421 ggcgcttttc cgcttcctcg ctcactgact cgctacgctc ggtcgttcgg ctgcggcgag
      481 cggtactgac ttacacaaaa acggcagcac ggttatccac agaatcaggg gataaggccg
      541 gaaagaacat gtgagcaaaa gaccaggagc aggaagaagg ccgcgccgca ggcgtttttc
      601 cataggctcc gcccccctga cgagcatcac agaaatcgac gctcaagtca gaggtggcga
      661 aacccgacag gacttaaaga taccagacgt ttccccctgg tggctccctc gtgcgctctc
      721 ctgttccgac cctgccgctt accggatacc tgtccgcctt tctcccttcg ggaagcgtgg
      781 cgctttctca tagctcacgc tgtaggtatc tcggttcagt gtaggtcgtt cgctccaagc
      841 tgggctgtgt gcacgaaccc cccgttcagc ccgaccgctg cgccttatcc ggtaactatc
      901 atcttgagtc caacccggaa agacatgcaa aacaccattg gcagcagcca ctggtaactg
      961 atttagagga gttagtcttg aagttatgcg ccagttaagg ctaaactgaa agaacaagtt
     1021 ttggtgactg cgctcctcca agccagttac cctggttcag aaacttgccg gttactgaac
     1081 cttcgaaaaa accaccttgc cgggtggttt tttcgtttac gagaaacgat acgatccagt
     1141 tgcctgagag tcaagacaga aaaaggccgc atatagcggc cttttctttt ctcaaaatat
     1201 aggaaccaat tcatctaatt ccttaatgac attaggtgac ttcctgctcg cgttaagact
     1261 gtattgagtc tgcatgttta tccacgactc ggcactgcga ccaagaactc gagaaagcct
     1321 taatgccatc tcaacactta aatcagcttt tccattcagc actctactta gagtggaagg
     1381 tgatacatgc agtttttcag acaggtccgc ggctgatatt tcaaacggtt ccataaacat
     1441 ctcacggata aaaacccctg gatgtactgg atcgacaaga ttaatcatac cttcctctga
     1501 agcctatatt agttttaaaa agataggcct attgcgtttt cagattgcgc attgcgcata
     1561 acgcaactca ttgttgacta aaaaaaagaa tgacattatg atgcacattg gtgcgtctaa
     1621 tcattcctta tgatgtgggt acttgatgtg aaattcaagg ccccggcatt gtacagcgca
     1681 tcaaaccaat gtcaacagat taaaatgcga cttggttaag taaaacctac gtcatttatt
     1741 caaatagagc aaggggtttg caatggaaat acggatgaac cggaaaaata aactgcgatg
     1801 tttctatcta aacaaatatg ggatggtgat taatgatcat aaatatcaag cataaaggtt
     1861 tgcgtaagtt tgccgaaaca ggtaacaacg caggaattcc gcaacagttt actcaacgtc
     1921 tgaagctgat cctaacagcc ttaagcacag cgacgaactt gcaggatatg atggatttaa
     1981 aggcattgcg ctgccatcca ttgaagggag accgtcaagg agagtattcg ttagaggtca
     2041 atggaaactg gcgcgtagtg tttaagctcg aagaacctaa cgtctttgac gtggatctcg
     2101 aggattatca ctaagaaggt ccttaaagca tcaaagtgac agtatcgatg ctttagggtc
     2161 tcataaaaaa gcaaaacctc ggggtaagtt atatgaagta ttttctgtac cagatagtcc
     2221 ctatagcagc catcatttgc gcagcaattc tagcgctaaa aggtatcaat ggctgggggt
     2281 ggttcttaac tgttgggttc ctgcttgcag gggcagatac agtaaaggct cagttatcta
     2341 agtagtaata aacactatca atagtggttg gataattgcc aaaaaagcct ctatctgttc
     2401 tgaaacagac aacaaggaaa aatcggtgta agccacctcc ataagaggtg gtattgatat
     2461 caacatagat aaaaccatcc cgtaaatcac agcatttacc ataacgtcgc attacgcgca
     2521 ccgctaaaac gcgctgaacg cgattctgcc gcgaacaccg caaaaagaga tgttttacca
     2581 agcgaaaacc agaaaaatgc gtcaggatcg ctttcagctc actgcatagc tatgcatgaa
     2641 agtgaatggc gatcggtttg ggcgcatacg gtgcccatga gacacatttt cggacatttt
     2701 cagttcgtga atccctgact cattgctaca tatctgaaca gacaccccta gcagcgcccc
     2761 caggggcgtc ctgtaaaaaa acacaccgcg ccgctagcag cacccctaat ataaaatgat
     2821 gttttttatg aaaatagtca gtaccacccc taaaaagcgg tgttggcgca gctacaacac
     2881 cgcgccgaca ccgctttttt aaatatcaca aagagagcaa gaagaactaa tttgtcataa
     2941 ctctctattt ataaagaaaa atcagaaaaa aattgttttt gcgtggggtg tgggcatttc
     3001 aggcatgaga acagactcgc gtttttccgg agtatcagcg gaattattga ttaagaaaca
     3061 ctcgacgcag agcgaaattt tatgcaacag cggctgcact gcgcagggat tatttatcag
     3121 ttgatatgct gtgccatgat acgtcctaaa aaaacagaac aggatgtgca attgtaatac
     3181 cgtcgcccgc aacgtcttac aattaccacc tggtcagggt ccacccgaca cccggtactg
     3241 acggagaaca acggaag
//
