LOCUS       NZ_MW655531             4612 bp    DNA     circular CON 29-APR-2024
DEFINITION  Salmonella enterica subsp. enterica serovar Typhimurium strain ATCC
            14028 plasmid pUA1144, complete sequence.
ACCESSION   NZ_MW655531
VERSION     NZ_MW655531.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN20181722
KEYWORDS    RefSeq.
SOURCE      Salmonella enterica subsp. enterica serovar Typhimurium (Salmonella
            typhimurium)
  ORGANISM  Salmonella enterica subsp. enterica serovar Typhimurium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 4612)
  AUTHORS   Otero,J., Sanchez-Osuna,M., Lopez-Perez,J., Erill,I., Campoy,S.,
            Barbe,J., Cortes,P. and Llagostera,M.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-FEB-2021) Departament de Genetica i de Microbiologia,
            Universitat Autonoma de Barcelona, Facultat de Biociencies, Campus
            Bellaterra, Bellaterra (Cerdanyola del Valles), Barcelona 08193,
            Spain
COMMENT     ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_028864555.1-RS_2024_04_29
            Annotation Date                   :: 04/29/2024 05:02:41
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 7
            CDSs (total)                      :: 7
            Genes (coding)                    :: 6
            CDSs (with protein)               :: 6
            Genes (RNA)                       :: 0
            tRNAs                             :: 0
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 1
            CDSs (without protein)            :: 1
            Pseudo Genes (ambiguous residues) :: 0 of 1
            Pseudo Genes (frameshifted)       :: 0 of 1
            Pseudo Genes (incomplete)         :: 1 of 1
            Pseudo Genes (internal stop)      :: 0 of 1
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            MW655531.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..4612
                     /organism="Salmonella enterica subsp. enterica serovar
                     Typhimurium"
                     /mol_type="genomic DNA"
                     /strain="ATCC 14028"
                     /serovar="Typhimurium"
                     /sub_species="enterica"
                     /db_xref="taxon:90371"
                     /plasmid="pUA1144"
                     /geo_loc_name="Spain: Catalonia"
                     /note="Plasmid sequence also found in sample SAMN20181723
                     (IC10); strain derived from Salmonella enterica subsp.
                     enterica serovar Typhimurium str. ATCC 14028"
     gene            complement(join(4422..4612,1))
                     /locus_tag="PYH77_RS00005"
     CDS             complement(join(4422..4612,1))
                     /locus_tag="PYH77_RS00005"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000165985.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Rop family plasmid primer RNA-binding protein"
                     /protein_id="WP_000165985.1"
                     /translation="MTKQEKTALNMARFIRSQTLTLLEKLNELDADEQADICESLHDHA
                     DELYRSCLARFGDDGENL"
                     /name="Rop family plasmid primer RNA-binding protein"
     gene            66..389
                     /locus_tag="PYH77_RS00010"
                     /old_locus_tag="pUA1144_00001"
     CDS             66..389
                     /locus_tag="PYH77_RS00010"
                     /old_locus_tag="pUA1144_00001"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000956000.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MobC family plasmid mobilization relaxosome
                     protein"
                     /protein_id="WP_000956000.1"
                     /translation="MLTIRVTDDEHARLLERCEGKQLAVWMRRVCLGEPVARSGKLPTL
                     APPLLRQLAAIGNNLNQTARKVNSGQWSSGDRVQVVAALMAIGDELRRLRLAVREQGTR
                     DDS"
                     /name="MobC family plasmid mobilization relaxosome protein"
     gene            598..>1029
                     /locus_tag="PYH77_RS00015"
                     /pseudo=""
     CDS             598..>1029
                     /locus_tag="PYH77_RS00015"
                     /inference="COORDINATES: protein motif:HMM:NF015397.4"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo=""
                     /codon_start=1
                     /transl_table=11
                     /product="relaxase/mobilization nuclease domain-containing
                     protein"
                     /name="relaxase/mobilization nuclease domain-containing
                     protein"
     gene            1067..1585
                     /locus_tag="PYH77_RS00020"
     CDS             1067..1585
                     /locus_tag="PYH77_RS00020"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001525988.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MbeB family mobilization protein"
                     /protein_id="WP_072650569.1"
                     /translation="MSNLLQTGAEFEKKLKERAESTEKMLNNEFRRLGESVSEAVTSNE
                     TKIRDAIALFTASTEESLEKHREGVKEAMMQHRRDVLKLAGNTGMMLLGIVFLLFTVSG
                     GTLWYLGGRIQANLEDIRKQEETLQKLNAKTWGVEFVQDGNRKFLVLPYGKSAEVISFQ
                     GKEWVHLKG"
                     /name="MbeB family mobilization protein"
     gene            1592..1825
                     /locus_tag="PYH77_RS00025"
     CDS             1592..1825
                     /locus_tag="PYH77_RS00025"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000137438.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MbeD family mobilization/exclusion protein"
                     /protein_id="WP_000137445.1"
                     /translation="MTELETHLLNALEQLQQDYMQRLSEWESAFVELQKMFSLTQRDNA
                     MLNERVMQLSQQVQHLSEQTERLSQLYSENWR"
                     /name="MbeD family mobilization/exclusion protein"
     gene            2189..2425
                     /locus_tag="PYH77_RS00030"
                     /old_locus_tag="pUA1144_00003"
     CDS             2189..2425
                     /locus_tag="PYH77_RS00030"
                     /old_locus_tag="pUA1144_00003"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_125075503.1"
                     /translation="MSIIIDREKYTALMTLIQTSQGYVGSKVQPNGYTLKCSFDTGFAC
                     CISRNTRNSNLSVHFENESTDPATHFAILSAIS"
                     /name="hypothetical protein"
     gene            complement(2546..3322)
                     /locus_tag="PYH77_RS00035"
                     /old_locus_tag="pUA1144_00004"
     CDS             complement(2546..3322)
                     /locus_tag="PYH77_RS00035"
                     /old_locus_tag="pUA1144_00004"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001423320.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NYN domain-containing protein"
                     /protein_id="WP_274703340.1"
                     /translation="MACRRRRNNPPVASRRQTPLLRRAVGKKTADAVFFISKMELTPLK
                     TIVYVDGFNFYYRKLKDSNKKWLNIKAMVEKLLPDDEIIGINYYTARISGRIDSDAPRR
                     QQIYFNALKSIDNLSIHYGTFSVNESRMFLVQPLDFKHHLKNPNQKIKFANVLKTEEKG
                     SDVNLGCHLVRDGFQGKYEKAVIITNDTDLAEPMRVVKSELSLYIELLSPVNKPARTLS
                     AICDKVTLISDQSIADSQFEDVIVVGEKTVTKPAQW"
                     /name="NYN domain-containing protein"
     Typing          4252..4337
                     /name="MOBP"
                     /typing="oriT"
                     /tool="MOB-suite"
                     /identity="98.851"
                     /coverage="100.0"
                     /evalue="3.99e-36"
     Typing          complement(3698..4226)
                     /name="rep_cluster_2350"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="85.636"
                     /coverage="98.0"
                     /evalue="3.01e-155"
     Typing          380..1929
                     /name="MOBP"
                     /typing="relaxase"
                     /tool="MOB-suite"
                     /identity="95.42"
                     /coverage="100.0"
                     /evalue="0.0"
ORIGIN
        1 ctgatgcctc cgtgtaaggg ggatttctgt tcatgggggt aatgataccg atgaaacgcg
       61 agaggatgct cacgatacgg gttactgatg atgaacatgc ccggttactg gaacgctgtg
      121 agggtaaaca actggcggta tggatgcggc gggtctgcct gggtgagccg gttgcccgtt
      181 ccgggaagct gccgacactg gcaccgccgt tactgcgtca gctggccgcc atcgggaata
      241 acctgaatca gacagcgagg aaggtgaaca gcgggcagtg gtcttccggt gaccgggttc
      301 aggtggtggc cgcactgatg gccatcgggg atgagctgcg ccggctgcgt ctggccgtca
      361 gggaacaggg gacgcgggat gatagttaag tttcatgcca ggggaaaagg cggtggcagt
      421 ggtccggttg attacctgct ggggagggag cgtaaccggg agggcgcaaa ggtgcttcag
      481 ggtaacccgg aagaagtccg ggaactcatc gatgccacgc catttgcgaa gaaatacacg
      541 tccggtgttc tgtcgttcgc ggagaaggaa ctgccgccgg gaggacgtga aaaagtgatg
      601 gcgagttttg agcgtgtact gatgcccggt ctcgaaaaaa atcagtacag cattctgtgg
      661 gtggagcacc aggacaaggg gcggcttgag cttaattttg tcattccgaa catggagcta
      721 cagagcggaa aacgcctcca gccgtactac gaccgcgcag acaggccgag aattgatgcc
      781 tggcagacgc tggtgaatca ccattacggg ctgcatgacc ccaacgcccc ggagaaccgc
      841 cggatactga ctctccctga taacctgccg gaaacgaaac aggcgcttgc agagagcgtc
      901 acacgcggga tagacgctct ttatcatgtc ggggagataa aaggccgtca ggatgtgatt
      961 caggcgctca cagaggcagg gcttgaagtg gtcagggtga cgcgaagcag tatcagcatt
     1021 gcagacccga acggtgggaa gaatatcagg ctgaaaggag cattttatga gcaatctttt
     1081 gcagacgggc gcggagttcg agaaaaagct gaaagagaga gccgaatcta cagagaaaat
     1141 gctgaacaac gagttcagga ggctcggcga atctgtaagc gaggctgtga catcaaacga
     1201 gacgaaaatc agagacgcta tagccctgtt cacagcctcg acagaggaat ctctggaaaa
     1261 acaccgggaa ggggtgaaag aggcgatgat gcagcacagg agggacgtgt taaagctggc
     1321 agggaatacg ggcatgatgt tgctggggat agtctttctc ctgtttaccg tgagtggcgg
     1381 gacgctctgg tatcttggcg ggaggataca ggcgaacctg gaagatatca ggaagcagga
     1441 agagacattg cagaaactga acgcgaagac atggggcgtg gagtttgtgc aggacgggaa
     1501 caggaaattt ctggtccttc cttacgggaa gtcagcagag gtgatttcct ttcaggggaa
     1561 ggaatgggta catctgaagg ggtgacacag agtgacagag ctggaaacac atttgctgaa
     1621 cgccttagag cagctgcaac aggactatat gcagcggctg agcgaatggg agagcgcctt
     1681 cgtggaattg cagaagatgt tttcgcttac gcaacgggac aacgcgatgc tgaacgagcg
     1741 ggtcatgcag ttgagtcagc aggtgcagca cttgagcgag cagacagaac gcttgagcca
     1801 gttatacagc gagaactgga gataagagag gaacggttga tacaggagcg cgaatatgcg
     1861 ttatccctgg aacgggagcg tcagccggaa atacaggaac gcacgctgga tggcccttcg
     1921 ctgggatggt gaaactatga aaaatggcag gttcagtgga ttttgacgga ctaatgtagt
     1981 ctgcaccatc ttgttgcata ggtattcatg cggttaaaat ttatcaggcg cgatcgcggc
     2041 agtttttcgg gaggtttgtt gcctgttttt ccggtttccc gtcagaaacg cgctgagagc
     2101 gtctgaggcg gtgcgggcaa cgggagttat ggtaaataga tttattgctg aggtttaatg
     2161 cctgcagagt aatactaatg gggatgtgat gagtattatt attgatcgtg aaaaatatac
     2221 tgctttgatg acgttgatcc agacatctca aggatatgtt ggctcaaaag tacaaccaaa
     2281 tggatataca ttgaagtgtt ctttcgacac tggttttgca tgttgtatct ctagaaatac
     2341 tagaaatagt aacttatctg ttcattttga aaatgaaagt acagatcctg caactcactt
     2401 tgctatttta agtgctatta gctaattttt tattttctgc acatagctat agatttcata
     2461 ctctttatat ttgcctgaag gtataatgca aaacataaaa agcccggggg acgggctttt
     2521 tttcaacaga acgagtatgt agccactacc actgtgctgg ttttgtcacg gttttctcac
     2581 caactacaat aacgtcttca aactggctat cagctattga ttggtcgctt ataagagtga
     2641 ccttatcgca tattgcgctc agggttcttg ctggtttgtt tacaggagaa agtagttcaa
     2701 tataaaggct gagctctgat ttgactactc tcattggttc agccaaatct gtatcattag
     2761 ttattattac agccttctcg tatttccctt ggaaaccatc tctaaccaag tggcaaccta
     2821 aattaacgtc agaacccttt tcttctgtct ttaagacgtt tgcaaacttt attttttgat
     2881 tcgggttttt taagtgatgt ttgaaatcaa gaggctgcac taaaaacatt ctgctttcat
     2941 tcaccgaaaa agtaccataa tggatactta ggttatctat gcttttcagt gcattgaaat
     3001 atatttgttg cctacgaggt gcgtcagaat caatccttcc tgagatccta gccgtgtaat
     3061 agttaattcc tattatttca tcatccggta gcaatttttc gaccattgct tttatgttca
     3121 gccacttttt gttggaatct ttcagcttac gataataaaa gttaaagcca tcaacataaa
     3181 ctattgtttt caatggggtt agctccattt tagatataaa aaaaaccgca tctgcggttt
     3241 tttttcctac ggcacgccgt aggaggggtg tttgcctgcg gctcgccaca ggagggttgt
     3301 ttcttcgcct gcggcacgcc acaggggggt tgtttcttcg cctgcggcac gccacaggtc
     3361 tgtaccaaca ttattgcatt ttttttgtct agtgcaaatg ttttatatgg tgacgaagta
     3421 agccctacct aaaggagaaa agatcttctt gagatccttt ttttctgcgc gtaatctcct
     3481 gctttgaaaa cgaaaaaacc accctggcag gtggtttttc gaaggttagt taatcctggc
     3541 agattctcta accgcggtaa cggtcttgtg cgagacatgt caccaaatct gtcctttcag
     3601 tgtagccgta gtcaggccgc cacttcaaga actctcgata catctctcgc acatcctgtt
     3661 taccagtggc cgttgccaat ggcgattagt cgtgtctttc cgggttggac tcaagttgat
     3721 agttaccgga taagacgcag cggtcggact gaacgggggg ttcgtgcata cagtccagct
     3781 tggagcgaac tgccttcccg gagccgagtg tcaggcgtgg aatgagaaac cgcggccata
     3841 acagcggaat gacaccggta caccgaaagg caggaacagg agagcgcacg agggagcttc
     3901 cagggggaaa cgcctggtat ctttatagtc ctgtcgggtt tcgccacctc tgacttgagc
     3961 gtcaattttt gtgatgctcg tcaggggggc ggagcctatg gaaaaacgcc tgcggcgcgg
     4021 cctttttccc tggttttgcc tttttgttca catgttcttt ccggccttat cccctgattc
     4081 tgtggataac cgcattaccg tctttgcgtg agctgatacc gctcgccgca gccgaacgac
     4141 cgagcgtagc gagtcagtga gcgaggaagc ggaagagcgc ctgatgcggt attttctcct
     4201 tacgcatctg tgcggtattt cacaccgcat atggtgctct tttcttataa tctgcactga
     4261 tgccacatag ttaagccagt atacactccg ctatcgctac gtgactgggt catggctgcg
     4321 ccccgacacc cgctaaaacc ccctgacgcg ccctgacggg cttgtctgct cccggcatcc
     4381 gctcacagac aagctgtgac cgtctccggg agctgtatgt gtcagaggtt ttcaccgtca
     4441 tccccgaagc gtgcgaggca gctgcggtaa agctcgtcgg cgtggtcgtg aagtgattca
     4501 caaatatcgg cctgttcatc tgcgtccagt tcgttgagct tctccagcag cgttaatgtc
     4561 tggcttctta taaagcgggc catgttaagg gcggtttttt cctgtttggt ca
//
