LOCUS       NZ_MW655529             5463 bp    DNA     circular CON 29-APR-2024
DEFINITION  Salmonella enterica subsp. enterica serovar Typhimurium plasmid
            pUA1142, complete sequence.
ACCESSION   NZ_MW655529
VERSION     NZ_MW655529.1
DBLINK      BioProject: PRJNA224116
KEYWORDS    RefSeq.
SOURCE      Salmonella enterica subsp. enterica serovar Typhimurium (Salmonella
            typhimurium)
  ORGANISM  Salmonella enterica subsp. enterica serovar Typhimurium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 5463)
  AUTHORS   Otero,J., Sanchez-Osuna,M., Lopez-Perez,J., Erill,I., Campoy,S.,
            Barbe,J., Cortes,P. and Llagostera,M.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-FEB-2021) Departament de Genetica i de Microbiologia,
            Universitat Autonoma de Barcelona, Facultat de Biociencies, Campus
            Bellaterra, Bellaterra (Cerdanyola del Valles), Barcelona 08193,
            Spain
COMMENT     ##Genome-Annotation-Data-START##
            Annotation Provider          :: NCBI RefSeq
            Annotation Name              :: GCF_028864545.1-RS_2024_04_29
            Annotation Date              :: 04/29/2024 05:02:22
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision :: 6.7
            Features Annotated           :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                :: 6
            CDSs (total)                 :: 6
            Genes (coding)               :: 6
            CDSs (with protein)          :: 6
            Genes (RNA)                  :: 0
            tRNAs                        :: 0
            ncRNAs                       :: 0
            Pseudo Genes (total)         :: 0
            CDSs (without protein)       :: 0
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            MW655529.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..5463
                     /organism="Salmonella enterica subsp. enterica serovar
                     Typhimurium"
                     /mol_type="genomic DNA"
                     /serovar="Typhimurium"
                     /sub_species="enterica"
                     /db_xref="taxon:90371"
                     /plasmid="pUA1142"
                     /geo_loc_name="Spain"
                     /note="strain derived from Salmonella enterica subsp.
                     enterica serovar Typhimurium str. ATCC 14028"
     gene            1..1020
                     /locus_tag="PYH80_RS00005"
                     /old_locus_tag="pUA1142_00001"
     CDS             1..1020
                     /locus_tag="PYH80_RS00005"
                     /old_locus_tag="pUA1142_00001"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_005221104.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="replication initiation protein"
                     /protein_id="WP_001271364.1"
                     /translation="MSAALQYFEENLPHRPYHTDDLAFGLRISGKGRALLARYIQQNQP
                     HAQFWLVFDVDREGAAIDWSDRNAPAPNITVKNPVNGHAHLLYALNIAVRTAPDASVKA
                     LKYAAAVERSLCEKLCADVNYSGLICKNPFHLEWQVMEWREDAYTLDELADYLDLSASE
                     RRSIDKHYGMGRNCHLFEMTRKWAYRAIRQGWPAFSQWLEAVIQRVEMYNASLPVPLSL
                     AECRAIGKSIAKYTHRNFTPETFAQYVADTHTPEIQAARGRKGGKANSSENQSDKGKKS
                     AAVRWTANDDKRRRALDMYILGASTEDIAVAVGVSSRTIRRWMDNSGEWLTKKQIIKC"
                     /name="replication initiation protein"
     gene            complement(1281..1679)
                     /locus_tag="PYH80_RS00010"
                     /old_locus_tag="pUA1142_00002"
     CDS             complement(1281..1679)
                     /locus_tag="PYH80_RS00010"
                     /old_locus_tag="pUA1142_00002"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_001222916.1"
                     /translation="MRISNIEWLKKRIGFIRKLGEQTARQRQIIDLLDNEAGLTEQERK
                     LLHVLATAEKNDLQAQESERKQAVQKRIEGKKQRRERNHRLFLAAGLLIEAGLVDTKTG
                     ELCYKKDRILQALKEIKYDLETSPNPDA"
                     /name="hypothetical protein"
     gene            1856..2782
                     /locus_tag="PYH80_RS00015"
                     /old_locus_tag="pUA1142_00003"
     CDS             1856..2782
                     /locus_tag="PYH80_RS00015"
                     /old_locus_tag="pUA1142_00003"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_005221102.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MobA/MobL family protein"
                     /protein_id="WP_001736644.1"
                     /translation="MATYHLSVKFGGKGQAANHADYIERKEKYRDRQDLEYSAHGNMPE
                     WARDNPSHFWQAADQFERANGSTYRELEIALPRELTPEQRLELVQDFVRQEAGERHAWS
                     FAIHNPKASIEGGEQPHAHIMMSQRVNDGIERTPEQYFRRYNARYPERGGAKKDSGSLT
                     PTQQKEQLRELRKRWEVKHNEHMRKNGFERGFIDCRTLKEQGIERRPEVHLGFEAAGRL
                     DDAQRHDIMQKRSEPDYSRHLEQARTVGHDIMEWLDTPVKQHELVRRLQHDVAREHGFD
                     MRDRVSRQDRTEPERVKSPSRGFSMGF"
                     /name="MobA/MobL family protein"
     gene            2785..3318
                     /locus_tag="PYH80_RS00020"
                     /old_locus_tag="pUA1142_00004"
     CDS             2785..3318
                     /locus_tag="PYH80_RS00020"
                     /old_locus_tag="pUA1142_00004"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_005221103.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_000168774.1"
                     /translation="MASTEEKLLTLLLSVEHLQHTAMEQQKAVADSLAVARETLRGYRD
                     ISDGVAKQVRDEVRNEVQNLDVAGLIGERISQDFQRLEESVANMKANADALNRDIATIH
                     SNIVQEYNTLKGYSWKWLGGVSVAFLVMFCVLGWGMKTMLDRNYNATAAVYQKVVILED
                     KLAEKPVTGKNRKN"
                     /name="hypothetical protein"
     gene            3539..4663
                     /locus_tag="PYH80_RS00025"
                     /old_locus_tag="pUA1142_00005"
     CDS             3539..4663
                     /locus_tag="PYH80_RS00025"
                     /old_locus_tag="pUA1142_00005"
                     /inference="COORDINATES: protein motif:HMM:NF013211.4"
                     /GO_component="GO:0016020 - membrane [Evidence IEA]"
                     /GO_function="GO:0140911 - pore-forming activity [Evidence
                     IEA]"
                     /GO_process="GO:0019835 - cytolysis [Evidence IEA];
                     GO:0050829 - defense response to Gram-negative bacterium
                     [Evidence IEA]; GO:0031640 - killing of cells of another
                     organism [Evidence IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="colicin-like pore-forming protein"
                     /protein_id="WP_021529456.1"
                     /translation="MSGGDGRGPGNTGLGHNGGKPSGNVNGSSGHGGPSSGGGYHYNPG
                     KGPASTVGPDGEVHINITGGMEKDPPGKHHGNGGSGNGHGAGNHNSNSGGNGKTTSIPG
                     WSPDSGKPGRYLPTNKDKLIKGLIQSIDDHSGTYTIHYTGGAVATVTVPNGDVNKMNVH
                     YNIGSGPSSGNKLTRDTIKSFLEFKAENEANAVNDAISKVNDFYKELASKYGDKLEKEA
                     KALADEAKGKKIRNANEAIKAFDRYKDVLNKKFSVSDREAIAKALESLNKDQMAKQLKI
                     FGKAFGVVGEAIQWGGFISGLVKGFRTGDWNEAFISGEKIAVGKVASVMVTVAFSAMAV
                     NPIGILGFAVIMAVTSALITDERLKQLNSFINGI"
                     /name="colicin-like pore-forming protein"
     gene            4784..4972
                     /locus_tag="PYH80_RS00030"
     CDS             4784..4972
                     /locus_tag="PYH80_RS00030"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_000547462.1"
                     /translation="MHIIKPQLTKLKVVFVSKGACLFISNRQKGYVDDPKRDISININN
                     SILVGLRFKLAMIKDKM"
                     /name="hypothetical protein"
     Typing          2..776
                     /name="Col156"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="96.907"
                     /coverage="83.0"
                     /evalue="0.0"
     Typing          1857..2779
                     /name="MOBQ"
                     /typing="relaxase"
                     /tool="MOB-suite"
                     /identity="98.052"
                     /coverage="100.0"
                     /evalue="0.0"
ORIGIN
        1 atgagcgccg cgcttcaata cttcgaagaa aatttacccc accgccccta tcacacggat
       61 gatctcgctt tcggccttcg catctccggc aaagggcgtg cgcttcttgc gcggtacatc
      121 cagcagaacc agcctcatgc gcagttctgg ctggtttttg acgttgaccg cgagggggct
      181 gcgattgact ggagcgaccg gaacgccccc gcgccgaaca tcaccgttaa aaatcctgtg
      241 aacggacacg ctcacctgct ctacgcactc aacatcgccg tgagaaccgc gcctgatgcc
      301 tcggttaagg cgctgaaata tgccgcagcg gttgaacgtt cgctgtgtga gaaactttgt
      361 gctgatgtga actacagcgg cctgatttgc aaaaatccgt tccacctgga atggcaggtg
      421 atggagtggc gcgaggacgc ctataccctc gatgaactgg cagattatct cgatttgagc
      481 gcctcagagc gtcgtagcat cgataaacat tacgggatgg ggcgaaactg ccacctgttc
      541 gaaatgacgc gcaaatgggc ttacagggcg attcgtcagg gctggccagc gttctcacag
      601 tggcttgaag cggtgatcca gcgtgtcgaa atgtacaatg catcgcttcc cgttccgctt
      661 tcactggctg aatgtcgggc tattggcaag agcattgcga aatacacgca caggaacttc
      721 acgccggaaa ctttcgcaca gtatgtggct gatacgcaca cgccagaaat tcaggcagca
      781 cgcggtcgca agggcgggaa ggccaattcg tcagaaaatc agtcggacaa agggaaaaaa
      841 agcgccgctg ttcggtggac tgctaacgac gacaaacgtc gtagggcgct tgatatgtat
      901 atcttgggag cgtcaacgga agatattgca gtggcggttg gtgttagcag ccggactatt
      961 cgacgctgga tggataattc tggagaatgg ctaaccaaga aacaaataat taaatgttag
     1021 ttaacaaaga agcaacgcta ccccccgttt tttgttaatg ggatgttaaa ttcgcggaca
     1081 tgaacaagcc tatatcagat aacagcgcct ttcggcgtct ttttgagcag cgggctttcc
     1141 ggcggttttc tcctctcagc ccagcaatgg tgcggcttac cgcatgattg aggtggtcgt
     1201 gctcgccgca gtctcatgac cgagcgtagc gagcgaatga gcgaggaagc accagggaac
     1261 ctgaacacgg atggaggcac ttacgcgtct gggtttgggg atgtctccag atcgtactta
     1321 atttccttaa gtgcctgtaa tatcctgtct tttttatagc atagctcgcc tgtttttgtg
     1381 tctaccagtc ctgcttcgat cagtagccca gccgcgagaa agagtcggtg attgcgttct
     1441 cgtcgttgtt tttttccctc gattcgtttt tggaccgcct gttttcgttc gctctcctgt
     1501 gcctgtaagt cgtttttttc cgctgttgcc agtacgtgga ggagtttgcg ttcctgttct
     1561 gtgagtcctg cttcgttgtc gagcaggtca ataatctgtc tctgtcgtgc ggtctgttct
     1621 ccgagcttcc tgatgaatcc gatccgtttc ttcagccatt cgatgttgct gatgcgcatg
     1681 ttcgtggtgc tccctggtgt ttttttgcgg tgtgttgtgg tcgtgcagta tatcgcttgc
     1741 ggtcggcggg tgcagggggt atcttccgtg ctaattcgta aaattagaag gaagcgcact
     1801 tatatgtttc tctccttcgt cgagaaacag tgcgctcctg cggagggctg aaaccgtggc
     1861 gacctatcac ctcagcgtta agtttggtgg caagggacag gctgcaaacc atgccgatta
     1921 catcgagcgc aaagagaaat accgcgaccg tcaagatttg gaatattccg cacacggaaa
     1981 catgccggaa tgggcgcgag ataatccctc ccatttctgg caggcggctg accagtttga
     2041 acgtgcaaac ggttcgactt atcgggaact ggagatagcg ctgccccgtg aactgacacc
     2101 ggaacagcgc cttgaactgg tgcaggattt tgtacgtcag gaagctggcg aacggcatgc
     2161 atggagtttt gccattcaca atccgaaagc gagcattgag ggaggcgaac agcctcatgc
     2221 gcatatcatg atgagtcagc gtgtgaatga tggcattgaa cgtacaccgg aacagtattt
     2281 ccggcgctat aacgccaggt atcccgagcg gggaggtgcg aaaaaggatt caggaagcct
     2341 gactcccact cagcaaaaag agcagttgcg ggaattgcga aaacgctggg aggtgaagca
     2401 caacgaacat atgagaaaaa atggctttga aaggggcttc attgactgtc ggacgctgaa
     2461 agaacagggc attgaacgac gtcccgaagt gcatctgggt tttgaagctg ccggacggct
     2521 tgatgatgcc cagcgtcatg acatcatgca aaaacggtct gaaccggact attcccgcca
     2581 tcttgaacag gcgcgaacgg tcgggcatga catcatggaa tggctggaca ctccggttaa
     2641 gcaacatgaa ctggtcagaa ggctgcaaca tgatgttgcg cgggagcatg gctttgacat
     2701 gagagacaga gtgagcagac aggaccgaac tgaacctgaa cgggttaaat caccgtcacg
     2761 tggattttct atgggattct gaacatggcc agcacagaag aaaaattact cacgctcctg
     2821 ttatcggtgg agcatttgca acataccgca atggagcaac agaaagctgt tgctgattct
     2881 ctggctgtgg caagggaaac acttcgcgga tatcgggata tttctgacgg tgtggcaaaa
     2941 caggtcaggg atgaagtcag aaatgaggtg cagaatctgg acgtagcagg gctgataggt
     3001 gagcgcatca gccaggattt tcagcggctg gaagagtcag tcgcaaacat gaaggcaaac
     3061 gcggatgccc tgaacaggga tattgcgaca attcacagca atatcgtgca ggaatacaac
     3121 acccttaaag ggtatagctg gaaatggctg ggtggggtgt cagtggcttt tctagttatg
     3181 ttctgtgtgc tcggatgggg aatgaaaaca atgctcgaca ggaactacaa cgccacagcg
     3241 gcggtgtatc agaaagttgt gatactggaa gataaactgg cggaaaaacc tgtcacgggt
     3301 aagaaccgga aaaactgacg cgcttcgctt gtccaacgcc tcacggacag cgaaaggatt
     3361 tcgcgttccg ttcaccgttt tcatgagtga ttcctccgaa ctgccaaaaa atatccctcc
     3421 ctgacttgac agaaaaaata atggcgagta ctttttgatc tgtacataaa accagtggtt
     3481 ttatgtacag tattaactat gtaattaatt gttttaacga ttaaaagagg gaatttttat
     3541 gagtggtgga gatggtcgtg gccctggtaa tacagggctt ggacataacg gtggtaaacc
     3601 cagtggaaac gtgaatggct catctggaca tggaggacca tcatctggcg gtgggtatca
     3661 ttacaatccg ggaaaaggtc ctgcaagcac tgtaggtcct gacggggagg tgcatatcaa
     3721 cattaccggt ggtatggaaa aagatcctcc aggaaaacat cacggtaatg gtggctcagg
     3781 taatggtcac ggtgctggaa atcataacag caattcaggc ggcaatggaa aaacaacgtc
     3841 tattcctgga tggagccctg actctgggaa acctggcaga tatttaccga caaataaaga
     3901 taagttaatt aagggactta ttcagtcaat agatgaccat tctggaacgt acactatcca
     3961 ttatactggt ggtgcagtag ctacagtaac tgtaccaaac ggtgatgtga ataaaatgaa
     4021 tgttcactat aatatcggta gtgggccgtc atcaggtaat aaactgactc gtgatactat
     4081 aaaaagcttt ttagaattca aggcagaaaa tgaagctaat gctgtaaatg atgcaataag
     4141 caaagttaat gacttttata aagagttagc atcaaaatac ggcgataagt tggagaaaga
     4201 agccaaggca ctagccgatg aagctaaagg gaaaaaaatt cgcaatgcta atgaggcgat
     4261 taaagccttt gataggtaca aggatgtgct taataagaaa ttcagcgtat ccgaccgaga
     4321 agcgattgca aaagcactgg agtctcttaa taaagatcaa atggctaaac agttaaaaat
     4381 ttttggtaag gcctttggtg tcgtaggtga ggctattcag tgggggggat ttatcagtgg
     4441 cttagttaaa ggattcagaa ctggtgactg gaatgaggct tttataagcg gggaaaaaat
     4501 cgcagtcggc aaggtagcat ctgttatggt tacagtggca tttagtgcta tggcagtaaa
     4561 tcctattggt attttagggt ttgcagtaat tatggcagtg actagtgcct taattacaga
     4621 tgaaaggctg aaacaactaa acagctttat taacggcatt taataaacaa aaggtcgtac
     4681 cgtttgatat ggtatgacct ttattttgtt tttctatcgc tttttgttgg ttataaagta
     4741 atagactgta aaaatcaatc caaatggagg tagtgataat ataatgcata ttataaaacc
     4801 ccagttaacg aagttaaaag ttgtttttgt tagtaagggt gcttgcttat ttattagtaa
     4861 tagacaaaaa gggtatgtgg acgatccaaa aagagatata agtataaata taaataattc
     4921 tatacttgtt gggcttagat tcaaacttgc gatgataaaa gataaaatgt aaaaggataa
     4981 ggcaaggata aaattcctta aatagaattc catatctatt tttttcattt ataaaatcct
     5041 cgttagttaa atgtttataa tattgcctta ctttatccat aaatctagaa gtagttatca
     5101 caaaagttac ttttttgact cgttcgccct tttgaacggt cgaaactgtt tgcgaatcgc
     5161 tttcgtgcat agttatgcaa cgccctgaaa gtgattctga cgcatttttc tggtttggcc
     5221 tggtgtttcc ttgtcttttt gcgttttttg cgccagaaag cgactgaggg cgttttaagg
     5281 ggtacgtaca acgggagtta tggtaaatgg atcggttttg cgggaaggct cgacaggttt
     5341 tgttgttggg ggtagtgtaa gcgactgaaa aacaaacgcc cctgaaattc gtgtctctcc
     5401 gccaagattg tcacgagaat acaggggcga ggtcggtcga taacctggaa ggaatcgtaa
     5461 cac
//
