LOCUS       NZ_MW651980             2096 bp    DNA     circular CON 08-MAR-2024
DEFINITION  Escherichia coli strain DR162-CEF plasmid pDR162-CEF-D, complete
            sequence.
ACCESSION   NZ_MW651980
VERSION     NZ_MW651980.1
DBLINK      BioProject: PRJNA224116
KEYWORDS    RefSeq.
SOURCE      Escherichia coli
  ORGANISM  Escherichia coli
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Escherichia.
REFERENCE   1  (bases 1 to 2096)
  AUTHORS   Tarabai,H., Literak,I. and Dolejska,M.
  TITLE     First report of qnrE in Escherichia coli from wildlife
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2096)
  AUTHORS   Tarabai,H., Literak,I. and Dolejska,M.
  TITLE     Direct Submission
  JOURNAL   Submitted (19-FEB-2021) Department of Biology and Wildlife Diseases,
            University of Veterinary and Pharmaceutical Sciences Brno, Palackeho
            tr. 1946/1, Brno, Brno 61242, Czech Republic
COMMENT     ##Assembly-Data-START##
            Assembly Method              :: SMRT Link v. v8.0
            Assembly Name                :: pDR162-CEF-D
            Coverage                     :: 356X
            Sequencing Technology        :: PacBio
            ##Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider          :: NCBI RefSeq
            Annotation Date              :: 03/08/2024 02:53:15
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision :: 6.6
            Features Annotated           :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                :: 1
            CDSs (total)                 :: 1
            Genes (coding)               :: 1
            CDSs (with protein)          :: 1
            Genes (RNA)                  :: 0
            tRNAs                        :: 0
            ncRNAs                       :: 0
            Pseudo Genes (total)         :: 0
            CDSs (without protein)       :: 0
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            MW651980.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..2096
                     /organism="Escherichia coli"
                     /mol_type="genomic DNA"
                     /strain="DR162-CEF"
                     /isolation_source="cloacal sample"
                     /host="Milvus migrans"
                     /db_xref="taxon:562"
                     /plasmid="pDR162-CEF-D"
                     /geo_loc_name="Russia"
                     /collection_date="06-Jul-2018"
                     /genotype="ST354"
                     /note="IncI1-I plasmid"
     gene            complement(1023..2012)
                     /locus_tag="KBP69_RS00005"
     CDS             complement(1023..2012)
                     /locus_tag="KBP69_RS00005"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001362017.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein rep"
                     /protein_id="WP_024136759.1"
                     /translation="MKNPDLQNLTDYSPSDAPWDAHRSVSDDVGGIYLLAAEYERYGAR
                     MALCGGLLRFGWSTLKETGETRLRLREAHFCRVRHCPVCQWRRSLMWQARFYQSLPRIV
                     ADYPDARWMFLTLTVRNCAIGELGEMLNRMNAAFQRMKVRKEFRPVQGWIRTTEVTRGS
                     DGSAHPHFHTLMMVPPGMLNGKSYVRHERWVELWRECLRVDYDPNVDVRAVKPRKPKGG
                     ESLACATAELVRGAVAETLKYSTKPADMVADPEWFLELTRQTHKRRFVATGGALKDVLK
                     LDQETDADMVIGDDISEGDDDGSRIAFEWKTEVRKYRRSPTKDKTESG"
                     /name="protein rep"
     Typing          complement(940..1021)
                     /name="MOBP"
                     /typing="oriT"
                     /tool="MOB-suite"
                     /identity="93.976"
                     /coverage="90.0"
                     /evalue="3.4000000000000004e-27"
     Typing          1106..1297
                     /name="ColpVC"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="98.964"
                     /coverage="100.0"
                     /evalue="6.14e-93"
ORIGIN
        1 gaattcctac aggtggtcac acccccgaac gattgccctc gttgcggggg tcgcttttaa
       61 tgcgaccact cccgacagaa taactccaaa accattttcc gacaaatccc ccttcaggcc
      121 ttgcggcaca agggctggag gcgaatttga atcctagagt tatcccttaa gtataaatac
      181 aaggatcgcg cgcgagattc gcttgaattt tgagcgggat tttcagtaac ccaaaacacc
      241 caaccccacc cacttacacc catctcatcc acagactttc accccgattt tgtgaacaac
      301 aaaaaaaacc gtcttgcagg tggttggcct cactgcgtga caccaaccac catccccagt
      361 gtttttcccg tgccgtcgtc aatcacaaaa tcggaaccca cgccggaggc gcgggccccc
      421 gcgattttct gtttgacgaa tcagggaacg gtgaacggta cgcggaattt tttcgcgttc
      481 cgtgaggcgt tggcggggtg tcggggcgca gtcctgacca ggttcgtaga accgcacagg
      541 gttgcaaagg ggtgtcccct ttggcacaag cgacggagcg aaacgccccg ttttgtgtac
      601 gccgcttatc gtgcctgtgt tttaggagaa caaaaaaatg ccgtgcatac agcccacaca
      661 atgacccaca taatcaccca caactcaaaa cacacagccc acacaatcac ccacacttta
      721 acccacaaaa aagaccacaa ccccattgac accccacaaa acaacccaca caaacggcga
      781 gtaaatcatt ttgccgtttt cgtgccgcag ccgttccgcg caatcgacaa actggcagtc
      841 agggaatctc acgaagtgcg cacttataca aactcacctt aggttcgttt gtcgtgcggt
      901 ctgcgacgct caaaaaaccg agaaacggcg ggaattttcg ggacaggatg tgtaattgta
      961 ataccgtcac acgcgacgct atcacaattg ccatctggtc aggggtgcac cccgacaccc
     1021 cgctagcctg attcagtttt atctttcgtc ggtgagcgac ggtactttct gacctcggtt
     1081 ttccactcga acgcgattcg tgaaccgtca tcgtcgccct cggaaatatc atcaccgatc
     1141 accatgtcgg cgtcagtttc ctgatcgagt ttcagcacgt ctttgagtgc gccgccggtc
     1201 gccacaaagc ggcgcttgtg cgtctggcgg gtcagttcga ggaaccattc aggatcggcc
     1261 accatgtcag ccggcttcgt ggaatatttc agggtttcgg ccaccgcacc gcgcaccagt
     1321 tcggcggtcg cgcaggccag cgattcgccg cccttcggct tacgaggttt cactgcccgg
     1381 acatcaacat tcgggtcata atcgacccgc agacactccc gccagagttc aacccagcgt
     1441 tcatgcctga cgtaactttt cccatttagc atgccaggcg gcaccatcat cagggtgtgg
     1501 aagtgcgggt gtgcgctgcc gtcgctcccg cgggtgactt ccgtggtacg tatccagccc
     1561 tgcacaggcc ggaactcctt gcgaaccttc atgcgctgaa aagctgcatt catccggttc
     1621 agcatctcgc ccagctcccc gatcgcacag ttgcgcacgg tcagagtcag gaacatccag
     1681 cgggcatcgg gataatccgc cacgatacgc ggcagggact ggtagaaacg ggcttgccac
     1741 atcagggagc gcctccactg gcagacagga caatgccgga cacggcagaa atgcgcctca
     1801 cgcagcctca gacgcgtttc tccggtttcc ttgagggtag accacccgaa acgcagtaaa
     1861 ccaccacaga gggccatacg cgccccgtag cgctcatatt cggctgcaag caggtaaatc
     1921 cctcccacgt catcagaaac gcttctgtga gcgtcccagg gcgcatctga gggggaatag
     1981 tccgtgaggt tctggagatc agggtttttc atgcgcacca cccgatagtg ggcgatggct
     2041 catctgacgt gttatcattg ccatatcacc tgttgtgtta gtcgtatcac caattc
//
