LOCUS       NZ_MW364981             2348 bp    DNA     circular CON 29-APR-2024
DEFINITION  Staphylococcus epidermidis strain SE456 plasmid pSE456_4, complete
            sequence.
ACCESSION   NZ_MW364981
VERSION     NZ_MW364981.1
DBLINK      BioProject: PRJNA224116
KEYWORDS    RefSeq.
SOURCE      Staphylococcus epidermidis
  ORGANISM  Staphylococcus epidermidis
            Bacteria; Bacillota; Bacilli; Bacillales; Staphylococcaceae;
            Staphylococcus.
REFERENCE   1  (bases 1 to 2348)
  AUTHORS   Fisarova,L., Botka,T., Du,X., Maslanova,I., Bardy,P., Pantucek,R.,
            Benesik,M., Roudnicky,P., Winstel,V., Larsen,J., Rosenstein,R.,
            Peschel,A. and Doskar,J.
  TITLE     Staphylococcus epidermidis Phages Transduce Antimicrobial Resistance
            Plasmids and Mobilize Chromosomal Islands
  JOURNAL   mSphere 6 (3), e00223-21 (2021)
   PUBMED   33980677
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2348)
  AUTHORS   Botka,T.
  TITLE     Direct Submission
  JOURNAL   Submitted (14-DEC-2020) Department of Experimental Biology, Faculty
            of Science, Masaryk University, Kotlarska 2, Brno CZ 611 37, Czech
            Republic
COMMENT     ##Genome-Annotation-Data-START##
            Annotation Provider          :: NCBI RefSeq
            Annotation Name              :: GCF_017354835.1-RS_2024_04_29
            Annotation Date              :: 04/29/2024 03:25:21
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision :: 6.7
            Features Annotated           :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                :: 1
            CDSs (total)                 :: 1
            Genes (coding)               :: 1
            CDSs (with protein)          :: 1
            Genes (RNA)                  :: 0
            tRNAs                        :: 0
            ncRNAs                       :: 0
            Pseudo Genes (total)         :: 0
            CDSs (without protein)       :: 0
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            MW364981.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..2348
                     /organism="Staphylococcus epidermidis"
                     /mol_type="genomic DNA"
                     /strain="SE456"
                     /db_xref="taxon:1282"
                     /plasmid="pSE456_4"
     gene            1360..2295
                     /locus_tag="J4G84_RS00005"
     CDS             1360..2295
                     /locus_tag="J4G84_RS00005"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002440612.1"
                     /GO_function="GO:0003677 - DNA binding [Evidence IEA];
                     GO:0003916 - DNA topoisomerase activity [Evidence IEA]"
                     /GO_process="GO:0006270 - DNA replication initiation
                     [Evidence IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="replication initiation factor domain-containing
                     protein"
                     /protein_id="WP_160195540.1"
                     /translation="MSRENYSKYLQNKDSDILHSTGYSNSRLHAHTVCISKPKISFDRM
                     TIVGNLNKNNAQKLSEFMSTEPQIRLWDILQTKFKAKALQGKVYIEYDKVKADTWDRRN
                     MRVEFNPNKLTHEEMLWLKQNIINYMEDDGFTRIDLAFDFEDDLSNYYAMTDKAVKKTV
                     FYGRDGKPETKYFGVRDSDRFIRIYNKKQERKDNADVEVMSDHLWRVEIELKRDMVDYW
                     NDCFNDLHILKPDWKIIERTSDRAIVFMLLNDEEEWGKIHRNSRTKYKNLIKEISPVDL
                     TELMKSTLRENEKQLQKQIEFWQIKSKKLF"
                     /name="replication initiation factor domain-containing
                     protein"
     Typing          1417..2270
                     /name="rep_cluster_1118"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="90.058"
                     /coverage="90.0"
                     /evalue="0.0"
ORIGIN
        1 agctatttgg gagccatttt tgattttagg tatccatatg gtatccattt ttgattttgt
       61 gtagctattc ggtagctttt gtgtagccgt tcgggagtca tataacaatt tttatcgcat
      121 aaataggaat cccatttgac actgtcaaat caatattttg cacagaaata gctaccgaat
      181 ggagacattt ggagacattt ctgtgcagga ttccacttat gctctttaaa atacaagagt
      241 tacattatac acctattttt taaggcttta gctttttatt aagaagaata accgagatag
      301 aaaaacatat ttcgtattct aaaagattta gaaaataaat tttaaaatga tttatcgtct
      361 ctctgttgaa cgaaaaaagt ttttagttat tttttatacg tggaatgatt aaatgtccta
      421 gaaagggctt aaaatgcaaa ataaaagaac cactcaaaaa tgagtggtct ggagaatagc
      481 aataaaatgc tgtgcgatta aaattgagca ctgtattgag cataccatac gcatttatgc
      541 cgagaaaatt tattgatgtt gagaagaacc cttaactaaa cttggagacg aatgtcggca
      601 tagcgtgagc tattaagccg acgattcgac aagtttaggg attgttaagg gttccgaggc
      661 tcaacgtcaa taaagcaatt ggaataaagc attaaaaaat agccactcaa tttgtgagta
      721 gctatttttg ggcgaagatc acttcacatt aaaagactaa aactaaatgt gaatgaggat
      781 aatgctatat ttttacttta acacttattt attttcatct catccaaaac cattaaaaat
      841 agtcactcaa ttattgagtg actatgggtt ggtagaagaa ctatttcatg ttaaaagaat
      901 taatgatgtt cgagaattat attttcactt taacatttat ttaatcatag tgcattcaaa
      961 agtatttaac gatgagattt tttggctttt ttgaaacgag tttcttcttg tcttgatact
     1021 atatagaaat aactcaattt ttgaattaag gctttatccc ttgtcaataa agggttaagg
     1081 cgtttttttg ttgttgaaag aaatttttga cataggttta taaacaccaa aaagcttggt
     1141 cataatagac caagcttttt gatagtgtta tattaataac aaaataaaaa gaagtcgctc
     1201 actcccccgc caaagtttgt gaatgcgact tacccaagga aaaacattaa gttgtttttt
     1261 atattttgta tatctagata ttaaacgata ttagtttttt cttcaaggta tatattcggg
     1321 tgagcgactt cttaaattaa attaaggagt cgatttttta tgagtagaga aaattattca
     1381 aagtacttac aaaataagga tagtgatatt ttacactcaa ccggctactc taatagccgg
     1441 ttacacgcac atactgtgtg catatcgaaa ccaaaaatca gtttcgaccg tatgacaatt
     1501 gttgggaatt taaataaaaa taatgctcaa aagctatctg aattcatgag tactgaacca
     1561 caaattagac tttgggatat actacaaacg aaatttaaag ctaaagcact acaaggaaaa
     1621 gtttatattg aatacgacaa agtaaaagca gatacatggg atagacgtaa tatgcgtgtt
     1681 gaatttaatc cgaataaact tacgcatgaa gaaatgcttt ggttaaaaca aaacattatc
     1741 aactacatgg aagatgacgg ttttacaaga atagatttag cttttgattt tgaagatgat
     1801 ttaagtaatt attatgcaat gactgataaa gcagttaaga aaactgtatt ttatggtcgt
     1861 gacgggaaac cagaaacaaa atattttggc gttcgtgata gtgatagatt tattagaatt
     1921 tataacaaaa aacaagaacg taaagataac gcagatgtcg aagttatgtc tgatcactta
     1981 tggcgtgtag aaattgaact taaaagagat atggtggatt actggaatga ttgttttaat
     2041 gatttacata ttttgaaacc agattggaaa ataattgaac gcacttctga tagagcaata
     2101 gtttttatgt tgctaaatga tgaagaagaa tggggtaaaa ttcatagaaa ttctagaacc
     2161 aaatataaaa acttaattaa agaaatatct ccagttgatt taacggaatt aatgaaatcg
     2221 actttaagag aaaatgaaaa acaattacaa aagcaaatag aattttggca gataaaaagt
     2281 aagaagctat tttaaaaatg gctaccattc ggctcccttt tagctcccaa atagctacct
     2341 aataatgt
//
