LOCUS       NZ_MW248467             2683 bp    DNA     circular CON 14-FEB-2024
DEFINITION  Proteus mirabilis strain 1035 plasmid pPM1035, complete sequence.
ACCESSION   NZ_MW248467
VERSION     NZ_MW248467.1
DBLINK      BioProject: PRJNA224116
KEYWORDS    RefSeq.
SOURCE      Proteus mirabilis
  ORGANISM  Proteus mirabilis
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Morganellaceae; Proteus.
REFERENCE   1  (bases 1 to 2683)
  AUTHORS   Li,S., Feng,Z., Wei,R., Zhou,X. and Wang,H.
  TITLE     Description of a Plasmid Containing qnrD in Proteus mirabilis
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2683)
  AUTHORS   Li,S., Feng,Z., Wei,R., Zhou,X. and Wang,H.
  TITLE     Direct Submission
  JOURNAL   Submitted (11-NOV-2020) Animal Science, Shanghai Jiao Tong
            University, 800 Dongchuan Road, Shanghai, Shanghai 200240, 46: CN
COMMENT     ##Assembly-Data-START##
            Sequencing Technology        :: Sanger dideoxy sequencing
            ##Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider          :: NCBI RefSeq
            Annotation Date              :: 02/14/2024 01:56:37
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision :: 6.6
            Features Annotated           :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                :: 2
            CDSs (total)                 :: 2
            Genes (coding)               :: 2
            CDSs (with protein)          :: 2
            Genes (RNA)                  :: 0
            tRNAs                        :: 0
            ncRNAs                       :: 0
            Pseudo Genes (total)         :: 0
            CDSs (without protein)       :: 0
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            MW248467.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..2683
                     /organism="Proteus mirabilis"
                     /mol_type="genomic DNA"
                     /strain="1035"
                     /isolation_source="feces"
                     /host="bighead carp"
                     /db_xref="taxon:584"
                     /plasmid="pPM1035"
                     /geo_loc_name="China"
                     /collection_date="10-Nov-2019"
                     /note="SJTU PM1035"
     gene            961..1605
                     /locus_tag="JD409_RS00005"
     CDS             961..1605
                     /locus_tag="JD409_RS00005"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_032495680.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="quinolone resistance pentapeptide repeat protein
                     QnrD1"
                     /protein_id="WP_012634451.1"
                     /translation="MEKHFINEKFSRDQFTGNRVKNIAFSNCDFSGVDLTDTEFVDCSF
                     YDRNSLEGCDFNRAKLKNASFKSCDLSMSNFKNISALGLEISECLAQGADFRGANFMNM
                     ITTRSWFCSAYITKTNLSYANFSRVILEKCELWENRWNGTVITGAVFRGSDLSCGEFSS
                     FDWSLADFTGCDLTGGALGELDARRINLDGVKLDGEQALQLVESLGVIVHR"
                     /name="quinolone resistance pentapeptide repeat protein
                     QnrD1"
     gene            2243..2683
                     /locus_tag="JD409_RS00010"
     CDS             2243..2683
                     /locus_tag="JD409_RS00010"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_015063446.1"
                     /translation="MSQLFRLASPEDYEYIEELNLWELSFDKRPVQGVRCEDPVIGAEK
                     YNQGREKFKALASRHKKHWKPNGLTFSELIRWAIECGTPEQCQLVLALYHCTNDDDYQA
                     MGIQLSRSIDNANVSPIIFFTGKNQRLLGDISMLKQLEEKVR"
                     /name="hypothetical protein"
     ARG             962..1602
                     /name="qnrD1"
                     /gene="qnrD1"
                     /gene_name="quinolone resistance pentapeptide repeat
                     protein QnrD1"
                     /tool="amrfinderplus"
                     /drug_class="QUINOLONE"
                     /identity="100.0"
                     /coverage="100.0"
     Typing          712..867
                     /name="Col3M"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="98.089"
                     /coverage="100.0"
                     /evalue="2.29e-71"
ORIGIN
        1 cgttaggttt acctattatt ttatgtatta tcctatctat tattctatct cttattttat
       61 ctatttcgtc tgtaataggt agaataatac atagaataag atacagaata atagatagac
      121 acaagatgac gttgtgttat ttcttaccca ttaatccacc tgttattcta cctattactt
      181 tacccgttat tgcacccaat ttaggtataa cgggcagaat aacgggtgaa ataatgggta
      241 gaatcatagt tttactaact tgcaccccat gatactttca gtatcaatgc cactcatttt
      301 ctggacgaaa atgaatgaca taaggctccg ccctctggct attttcttcg gctggacgcc
      361 tgcgaaaaaa accattcacc caagcccgtc aaactcactg cgttcgtctg accaccccct
      421 tttttcgccc ctgtatttgg tcgctcaaaa atgtggtggt cagacgcttc gcttgacggg
      481 gggctttgcc cccaaaacga aacacgttca ctggggttca cttgccatcg ctggggcgtg
      541 tcatttcgtt tcggctcccc ctgtttttcc ctttcttcgc tggacgctca tcaggataaa
      601 aacaaaaagc ctaccgccct cgttttactc ggttggtcaa atcgcttctt gccacaaaac
      661 aagtttgtga ctttcagcga tttcgcatcg ttttacttgt cagtttgcac gatgttaaaa
      721 acgcactcag aagcccgcaa aaccgttcta aactttcagc gtagatttgg gtgttttata
      781 gggtgatcgt gtcttaaaat cgtttcgagg ggctttaatg gggatgaacg ggaggttttt
      841 gctaactaac tcgcccgttt aacataaaag ggattgtatg aatcaatttt agctagagtt
      901 taaggttgtt caaattaatg tacaatgatt gcactgtata aataaccagg tgtagcatgt
      961 atggaaaagc actttatcaa tgaaaagttt tcacgagatc aatttacggg gaatagagtt
     1021 aaaaatattg ccttttcaaa ttgtgatttt tcaggggttg atttaactga tactgaattt
     1081 gttgattgta gtttttacga caggaatagc ttggaagggt gtgattttaa tagagccaaa
     1141 ctaaaaaacg ctagctttaa aagctgcgat ttatcaatga gtaattttaa aaacattagc
     1201 gccttaggtc ttgaaattag tgagtgttta gctcaaggag ctgattttcg aggggctaat
     1261 tttatgaata tgataactac aaggtcatgg ttttgtagtg cttatataac caagacaaat
     1321 cttagttacg ctaatttttc tagagtcata ttagaaaagt gcgaactgtg ggaaaatcgc
     1381 tggaatggca ctgtgataac tggcgccgtg tttcgtggct ccgatctttc ttgtggggag
     1441 ttttcatcgt ttgattggtc tttggctgat tttactggtt gtgatttaac gggtggggcg
     1501 cttggcgagc ttgatgcaag gcgaattaat ttagatggag tgaagttgga tggagagcag
     1561 gcgcttcagc ttgttgagag tttaggtgtt attgttcacc gataaaatct aggtaaaaaa
     1621 cgcctaatgc cccaatgtgg tactaatcaa aacggagcga agcgacatct tcatcttgtc
     1681 tttgcttttc tccatgatca gttattgggt catggtctct tagctcgtta atctggctaa
     1741 gtttggttag gttgggcttc tttcgacact tcgcaatcca agaaatccct agtccgttga
     1801 ttggtgctct tatcaggtac gcactgtaat ctttcgatac cgcagcgtga ttcggaggta
     1861 gagccggaat ttcgttttcc ggtacgtttt actaccacaa tttgcctgtt tatcctttcg
     1921 gagaccgggc taagtccgag tcaatcaagt ggtgcatttg ggttaatgtc gttggctggt
     1981 atttaatgag aacgtgacaa gcgcctctca cgttgctaag attggattgc gacgtctaat
     2041 ctgagcaacg aatgcacaag atttagagta ccagagccct gtgatgctgt cacggggctt
     2101 tgttacatct ggagcttggt aaacctcata aattcaattc gcaacgctcg ccgcaaggcg
     2161 tgaacttgtt tcacgtcgag gaagcggaat ttctcgaaag ccttatactg tctccgttca
     2221 cacatgatcg gagggtgtct ctatgtctca attatttcgt ttggcatcgc cagaagatta
     2281 cgaatacatc gaagaattaa atttatggga attgtcattt gataagcgac cggttcaagg
     2341 ggttcgttgt gaagatccgg tgatcggggc agaaaaatat aatcaagggc gtgaaaaatt
     2401 taaggcgtta gcgtcacggc ataaaaaaca ctggaaaccg aacggattga ccttttcgga
     2461 gttgatccgc tgggcaatag aatgcggaac tccagaacaa tgtcagcttg ttttagcgtt
     2521 ataccattgc acaaacgatg atgattatca ggcgatggga attcagttaa gccgaagtat
     2581 tgataatgca aatgtcagtc cgatcatctt tttcacaggt aaaaatcaac ggttattagg
     2641 tgatatttcg atgctaaaac agctcgaaga aaaggtgcgc tga
//
