LOCUS       NZ_MT560071             2516 bp    DNA     circular CON 15-MAY-2024
DEFINITION  Klebsiella pneumoniae strain RIVM_C014947 plasmid pRIVM_C014947_8,
            complete sequence.
ACCESSION   NZ_MT560071
VERSION     NZ_MT560071.1
DBLINK      BioProject: PRJNA224116
KEYWORDS    RefSeq.
SOURCE      Klebsiella pneumoniae
  ORGANISM  Klebsiella pneumoniae
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Klebsiella/Raoultella group; Klebsiella.
REFERENCE   1  (bases 1 to 2516)
  AUTHORS   Hendrickx,A.P.A., Landman,F., de Haan,A., Borst,D., Witteveen,S.,
            van Santen-Verheuvel,M.G., van der Heide,H.G.J. and Schouls,L.M.
  CONSRTM   Dutch CPE surveillance Study Group
  TITLE     Plasmid diversity among genetically related Klebsiella pneumoniae
            blaKPC-2 and blaKPC-3 isolates collected in the Dutch national
            surveillance
  JOURNAL   Sci Rep 10 (1), 16778 (2020)
   PUBMED   33033293
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2516)
  AUTHORS   Hendrickx,A.P.A.
  TITLE     Direct Submission
  JOURNAL   Submitted (03-JUN-2020) Bacterial Surveillance and Response, RIVM,
            Antonie van Leeuwenhoeklaan 9, Bilthoven 3721 MA, Netherlands
COMMENT     ##Genome-Annotation-Data-START##
            Annotation Provider          :: NCBI RefSeq
            Annotation Name              :: GCF_015511315.1-RS_2024_05_15
            Annotation Date              :: 05/15/2024 02:08:27
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision :: 6.7
            Features Annotated           :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                :: 3
            CDSs (total)                 :: 3
            Genes (coding)               :: 3
            CDSs (with protein)          :: 3
            Genes (RNA)                  :: 0
            tRNAs                        :: 0
            ncRNAs                       :: 0
            Pseudo Genes (total)         :: 0
            CDSs (without protein)       :: 0
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            MT560071.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..2516
                     /organism="Klebsiella pneumoniae"
                     /mol_type="genomic DNA"
                     /strain="RIVM_C014947"
                     /db_xref="taxon:573"
                     /plasmid="pRIVM_C014947_8"
     gene            complement(join(2432..2516,1..59))
                     /locus_tag="I0P93_RS00015"
     CDS             complement(join(2432..2516,1..59))
                     /locus_tag="I0P93_RS00015"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001487656.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_032610644.1"
                     /translation="MHEPPVQSDCCALSGNYRLESNPERHVKTPLAAATGKGYTRLLVQ
                     SS"
                     /name="hypothetical protein"
     gene            complement(1225..1410)
                     /locus_tag="I0P93_RS00005"
     CDS             complement(1225..1410)
                     /locus_tag="I0P93_RS00005"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000165998.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Rop family plasmid primer RNA-binding protein"
                     /protein_id="WP_032105038.1"
                     /translation="MTRQESAALNMAKFIRSQTLLLLERLEQMDLDEAAGCCEHLHDQA
                     EALYTMLNAQTGEEDA"
                     /name="Rop family plasmid primer RNA-binding protein"
     gene            complement(1777..2004)
                     /locus_tag="I0P93_RS00010"
                     /old_locus_tag="PMIDBGBA_05674"
     CDS             complement(1777..2004)
                     /locus_tag="I0P93_RS00010"
                     /old_locus_tag="PMIDBGBA_05674"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010615788.1"
                     /GO_component="GO:0005886 - plasma membrane [Evidence IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YgdI/YgdR family lipoprotein"
                     /protein_id="WP_021243043.1"
                     /translation="MKKIFVSVFAAAVALSALTGCTRTSYAIHTNDGRTIVSDGKPKES
                     DSGLLGYTDANGVKQQINKTDVKEVSEIPH"
                     /name="YgdI/YgdR family lipoprotein"
     Typing          1099..1178
                     /name="MOB_unknown"
                     /typing="oriT"
                     /tool="MOB-suite"
                     /identity="100.0"
                     /coverage="100.0"
                     /evalue="1.67e-34"
     Typing          complement(2..462)
                     /name="rep_cluster_2335"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="88.793"
                     /coverage="85.0"
                     /evalue="2.84e-155"
     Typing          complement(2250..2516)
                     /name="rep_cluster_2358"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="81.882"
                     /coverage="99.0"
                     /evalue="1.18e-54"
ORIGIN
        1 tcaagacgat agttaccgga taaggcgcag cagtcggact gaacgggggg ttcgtgcata
       61 cagtccatcc tggagcgaac tgccttcccg gaaccgagtg tcaggcgtgg aatgagaaac
      121 cgcggccata acagcggagt gacaccggta aaccgaaagg caggaatgcg ggggagcacg
      181 agggagccat cagggggaaa cgcctggtat ctttaagccg catcgggttt cgccaccact
      241 gatttgagcg tcagatttcg tgatgctcgt caggggggcg gagcctatgg aaaaacggct
      301 tcggcgcggc cttatgcctt cttcgctaag tatcttcctg gcatccccta gctggcatcc
      361 cccaggaaat ttctgctcca cccgtaagcc cgtaccgctc gccgcagccg aacgaccgag
      421 cgcagcgagt gagtgagcga ggaagcggaa tatatcctgt attacatttt ctcctgacgc
      481 gttttctttc attttctgcg cctgtcttat gtagcagtta tgctatgcgt tactgcggtg
      541 ttacatttta gccagtatac actccgctag cgctgagtga ctggtccggc gctgcgcccg
      601 gaacccgcct gtaccggttc agcagccgtt ccgggctgac tgcaattttt ttattttcct
      661 gcccgctacc ctgtaaacct ttcttctgcg ttgccgttaa caggaggtaa gccatgtttg
      721 gtttttcttc cggagacctg atgactcttg atgatgagcg acacctgttt gtgtctgttg
      781 tttcgggctg gctccggcgt gccgggggga tgccggagcc atgatgctgg atgcataccg
      841 gcagattttg tctgaaactg aaccggccgt aaggacggtc atgctcgaat ttcttgaatc
      901 cgttcgcatt cattacattt cgtcctgagc attttctgta tttctgtcca tacttaaacg
      961 aggcggccgt cacggacgat ggtcgtcgtt gcatgatgct gttatggatg agtgaaagta
     1021 atctaatcta acttgactta ccttccgggc agctccccgg tttttttttg cctgttcccg
     1081 gggaaccact caggacagga caggatgtgt atttgtaata ccgcgcacgc gccggcatca
     1141 caaataccca ggtcagggct gcgccccgac accccgccat cgcctcacgg ccgcgcactg
     1201 aattgcgcac ccgttcaccg attttcacgc atcttcctcg cctgtctgtg cgttcagcat
     1261 ggtgtaaagt gcttcggcct gatcgtgcag gtgctcacag cagccggcag cctcatccag
     1321 atccatctgt tcgagccgct cgaggaggag gagtgtctgt gagcggataa atttggccat
     1381 gttgagggcg gcggattcct gtctggtcac tggtgatttt ccccgtctgg tgatgatttt
     1441 tgcgtgaaaa gagcatgccg tcattctggt gcatagtcat gcatgccgtt aaaatttaac
     1501 aggagcgttt ctggcgggtt ccggggtggt ttgttgtggt ttttggtcat ggttccgtca
     1561 gaaaagcgct gagtgcgtct gaggcggtgc gggcaacgga tgttatggta aattcttggg
     1621 gggcttgatt ataaaaaccg cacttcctct aatgtcttgt gctttttaga caaccctgga
     1681 agcttttagc tttggtggtg caatttgctg ggattttggc ggagaacccc aggtaaagaa
     1741 aaaggccaca ttagcggcct ttttcggaga agatgctcag tgcggaattt cggagacttc
     1801 tttaacgtcg gttttattga tctgctgttt gacaccattc gcgtctgtat agccaagcag
     1861 gcctgagtct gattctttag gtttgccgtc gctgacaata gtgcgcccgt cattggtgtg
     1921 tatggcatag cttgtgcgcg tgcagccggt gagggctgaa agcgcaactg ccgctgcgaa
     1981 cacggaaaca aaaatctttt tcaaagccag ctccttttat ccatatcagt tttggtcact
     2041 aaccatctaa ctataggtca ttttttatgt gaaaagaggc ttgatggtgg gctgcatatc
     2101 gagttaggtg cgaggtgtta tggttaaagt gtggtgtctg gcggggaggg ggcagtgcgg
     2161 gcttatatct gatgtaatcc gaccgataca tataccaaga tgatttaagt attcctcttt
     2221 gtgaggttgg atgtctaatt tataaaagga tcttcttgag atcctttttt ttcgcgcgta
     2281 atctcttgcc ctgtaaacga aaaaaccacc cggcaaggtg gtttttcgaa ggttcagcaa
     2341 accggcaagt ttctgaaccg tggtaacagg gtgtacaaga ccgctgccac caaatttgtc
     2401 cttctagtgt agccgcagtc aggcgtcaac ttcaagaact ctgcaccagt aatcttgtat
     2461 accccttacc agtggccgct gccagtggcg tttttacgtg tctttccggg ttggac
//
