LOCUS       NZ_MT560070             2750 bp    DNA     circular CON 08-MAY-2024
DEFINITION  Klebsiella pneumoniae strain RIVM_C014947 plasmid pRIVM_C014947_7,
            complete sequence.
ACCESSION   NZ_MT560070
VERSION     NZ_MT560070.1
DBLINK      BioProject: PRJNA224116
KEYWORDS    RefSeq.
SOURCE      Klebsiella pneumoniae
  ORGANISM  Klebsiella pneumoniae
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Klebsiella/Raoultella group; Klebsiella.
REFERENCE   1  (bases 1 to 2750)
  AUTHORS   Hendrickx,A.P.A., Landman,F., de Haan,A., Borst,D., Witteveen,S.,
            van Santen-Verheuvel,M.G., van der Heide,H.G.J. and Schouls,L.M.
  CONSRTM   Dutch CPE surveillance Study Group
  TITLE     Plasmid diversity among genetically related Klebsiella pneumoniae
            blaKPC-2 and blaKPC-3 isolates collected in the Dutch national
            surveillance
  JOURNAL   Sci Rep 10 (1), 16778 (2020)
   PUBMED   33033293
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2750)
  AUTHORS   Hendrickx,A.P.A.
  TITLE     Direct Submission
  JOURNAL   Submitted (03-JUN-2020) Bacterial Surveillance and Response, RIVM,
            Antonie van Leeuwenhoeklaan 9, Bilthoven 3721 MA, Netherlands
COMMENT     ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_015511305.1-RS_2024_05_07
            Annotation Date                   :: 05/07/2024 04:19:27
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3
            CDSs (total)                      :: 3
            Genes (coding)                    :: 2
            CDSs (with protein)               :: 2
            Genes (RNA)                       :: 0
            tRNAs                             :: 0
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 1
            CDSs (without protein)            :: 1
            Pseudo Genes (ambiguous residues) :: 0 of 1
            Pseudo Genes (frameshifted)       :: 0 of 1
            Pseudo Genes (incomplete)         :: 1 of 1
            Pseudo Genes (internal stop)      :: 0 of 1
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            MT560070.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..2750
                     /organism="Klebsiella pneumoniae"
                     /mol_type="genomic DNA"
                     /strain="RIVM_C014947"
                     /db_xref="taxon:573"
                     /plasmid="pRIVM_C014947_7"
     gene            complement(383..1027)
                     /locus_tag="I0P71_RS00005"
                     /old_locus_tag="PMIDBGBA_05669"
     CDS             complement(383..1027)
                     /locus_tag="I0P71_RS00005"
                     /old_locus_tag="PMIDBGBA_05669"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017900990.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="quinolone resistance pentapeptide repeat protein
                     QnrB19"
                     /protein_id="WP_012954666.1"
                     /translation="MTLALVGEKIDRNRFTGEKVENSTFFNCDFSGADLSGTEFIGCQF
                     YDRESQKGCNFSRAMLKDAIFKSCDLSMADFRNVSALGIEIRHCRAQGADFRGASFMNM
                     ITTRTWFCSAYITNTNLSYANFSKVVLEKCELWENRWMGTQVLGATFSGSDLSGGEFST
                     FDWRAANFTHCDLTNSELGDLDIRGVDLQGVKLDSYQASLLMERLGIAVIG"
                     /name="quinolone resistance pentapeptide repeat protein
                     QnrB19"
     gene            complement(1121..>1276)
                     /locus_tag="I0P71_RS00010"
                     /pseudo=""
     CDS             complement(1121..>1276)
                     /locus_tag="I0P71_RS00010"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309907.2"
                     /GO_function="GO:0043565 - sequence-specific DNA binding
                     [Evidence IEA]"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo=""
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /name="helix-turn-helix domain-containing protein"
     gene            2344..2580
                     /locus_tag="I0P71_RS00015"
                     /old_locus_tag="PMIDBGBA_05670"
     CDS             2344..2580
                     /locus_tag="I0P71_RS00015"
                     /old_locus_tag="PMIDBGBA_05670"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001676031.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_012772745.1"
                     /translation="MARLTNLTPAEKKFLDDAVAAAERASGKKLNQPNRHIVLNRARAQ
                     IELQRYADRQRALREDERQQSDFAWSRPRAPRR"
                     /name="hypothetical protein"
     ARG             complement(387..1027)
                     /name="qnrB19"
                     /gene="qnrB19"
                     /gene_name="quinolone resistance pentapeptide repeat
                     protein QnrB19"
                     /tool="amrfinderplus"
                     /drug_class="QUINOLONE"
                     /identity="100.0"
                     /coverage="100.0"
     Typing          2006..2179
                     /name="MOBP"
                     /typing="oriT"
                     /tool="MOB-suite"
                     /identity="100.0"
                     /coverage="100.0"
                     /evalue="2.5600000000000002e-86"
     Typing          complement(1536..2027)
                     /name="rep_cluster_2335"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="92.51"
                     /coverage="81.0"
                     /evalue="0.0"
ORIGIN
        1 gcgggggtgc gggcaaggga tgttatgttt aatcggtctg accgtcaggt acaaaaaaaa
       61 gcccttaggg ggcttttttt ttgctatgag ttagccatat tttcgtgcga atttttcatc
      121 ggaatcgcat agataaataa taaactcaat aaacgcgatg atcgcgggtt catgattcgg
      181 gagtggttat tcgttgttct cgcgaaaatg aattggttag atattcatca aattcctgtc
      241 cagaatgcag cattagatgg catgtcgttg atgcggtagg tcaggatatt cgtccactgg
      301 agaaaacgtt tcacaatgct tgccaggagt cgtactggtt aaaagtaaat cgtcaaacgc
      361 atctcccggt gtaaacgctg aactaaccaa tcacagcgat gccaagccgc tccatgagca
      421 acgatgcctg gtagctgtct aacttaacgc cttgtaaatc aacaccccga atatctaagt
      481 cacctaactc cgaattggtc agatcgcaat gtgtgaagtt tgctgctcgc cagtcgaaag
      541 tcgaaaactc gccgccggag agatctgaac cactgaacgt cgcacccagt acctgagtcc
      601 ccatccagcg gttttcccac agctcacact tttccaacac gactttcgaa aaattggcgt
      661 agcttagatt agtattagtg atatatgcgc tgcaaaacca ggtgcgcgtg gtgatcatat
      721 tcataaagct tgcaccgcgg aaatctgcgc cttgtgcgcg gcagtggcga atttcaatgc
      781 ccaaggcact gacgttgcgg aaatctgcca ttgataaatc acagcttttg aaaatggcat
      841 ctttcagcat tgcgcgacta aaattgcacc ctttctgact ttcgcgatca tagaactggc
      901 agccgataaa ttcagtgccg ctcaggtcgg cacctgaaaa atcgcagtta aaaaatgtac
      961 tattttcaac tttctcaccg gtgaagcgat ttctgtcaat tttttcgcca actaatgcca
     1021 gagtcatatc tatgcctgtg tttttataca gtaatgacgc catggtaaac cttatgacgt
     1081 tatgcgtcaa acccgccagt atgacacctg caaatgcgta ttagatctgg tgtttcttca
     1141 gcaaggcacg tagctgatga taagtcagac ccagtaattc agcggctttt ttctggttaa
     1201 atttagcctg ctgtaagctg gtttgtagaa agtctttctc ttgctgctgc tggaattcac
     1261 gcagatccag cgttataacg atgtgtatcc tatgtgctcg gattggatag atttccatta
     1321 cggtgaagga tcttcttgag atcctttctg tggcgtcgta atctcttgct ctgtaaacga
     1381 aaaaaccgcc ctgcaaggcg gtttttcgaa ggttctcaga gcagcaactc tttgaaccgt
     1441 ggtaactggc ttacgaggag cgcagtaacc aaatctgttc tttcagttta gccttaacag
     1501 gcgcataact tcaagactaa ctcctctaaa tcagttacca gtggctgctg ccagtggcga
     1561 taagtcgtgt ctttccgggt tggactcaag atgatagtta ccggataagg cgcagcagtc
     1621 ggactgaacg gggggttcgt gcatacagtc catccaggag cgaactgcct tcgcggaact
     1681 gagtgtcagg cgtggaatga gataaacgcg gccataacag cggaatgaca ccggtaaacc
     1741 gaaaggcagg aatgcggggg agcacgaggg agccaccagg gggaaacgcc tggtatcttt
     1801 aagccgcatc gggtttcgcc accactgatt tgagcgtcag atttcatgat gtttgtcagg
     1861 ggggcggagc ctatggaaaa acggcttcgc cgcggcctta tctcttccct gttaagctcc
     1921 ttcctggtat ctcccaggaa atttccgccc cgcctgtaag ccggcaccgc tcgccgcagc
     1981 cgaacgaccg agcgcagcga gtcagtgagc gaggaagcgg aatatatcct gtactacata
     2041 tcctgctgac gcgctggtgc cgcctttttt ctcctgctac atgaagcact tcactgattt
     2101 ccacatccgt gccaacatag tcagccagta tacactccgc tagcgctacg tgactggttc
     2161 agggctgcgc cccgaaaccg gctaaaagct aatgacgcgc ctgcggcttg tccaacgcct
     2221 cacggcaccg gattaaaatc cgctcccgtt caccgtttct gactgccttt caccgtcgct
     2281 ggcgcttcat cgtttctact gtgtctggca gactgtgctg atttattctg actggagaac
     2341 gttatggcca gactgacaaa cttgacgcct gcagagaaaa aatttcttga tgatgctgtt
     2401 gccgcagctg aaagagcgtc aggtaaaaag ctaaatcagc ctaaccggca catcgtcctg
     2461 aacagagcgc gtgcgcaaat tgagttgcag cgttacgccg accgccagcg tgcattacgt
     2521 gaggatgagc ggcagcagtc cgattttgcc tggtcacgtc cgcgcgcgcc gcgccgctga
     2581 ttttggcttt tggcggttta gtggtgctga cgctgcgaaa tcacctgcca ttcacctgcg
     2641 tgcatagcca tgcagtcgcg cagaaatcat caggggcgtt tttccgggat actggtgagg
     2701 aaaggtgctg gaaacggccc tgatgcagca ggattgcgct gagggcgcct
//
