LOCUS       NZ_MT560069             3223 bp    DNA     circular CON 08-MAY-2024
DEFINITION  Klebsiella pneumoniae strain RIVM_C014947 plasmid pRIVM_C014947_6,
            complete sequence.
ACCESSION   NZ_MT560069
VERSION     NZ_MT560069.1
DBLINK      BioProject: PRJNA224116
KEYWORDS    RefSeq.
SOURCE      Klebsiella pneumoniae
  ORGANISM  Klebsiella pneumoniae
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Klebsiella/Raoultella group; Klebsiella.
REFERENCE   1  (bases 1 to 3223)
  AUTHORS   Hendrickx,A.P.A., Landman,F., de Haan,A., Borst,D., Witteveen,S.,
            van Santen-Verheuvel,M.G., van der Heide,H.G.J. and Schouls,L.M.
  CONSRTM   Dutch CPE surveillance Study Group
  TITLE     Plasmid diversity among genetically related Klebsiella pneumoniae
            blaKPC-2 and blaKPC-3 isolates collected in the Dutch national
            surveillance
  JOURNAL   Sci Rep 10 (1), 16778 (2020)
   PUBMED   33033293
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3223)
  AUTHORS   Hendrickx,A.P.A.
  TITLE     Direct Submission
  JOURNAL   Submitted (03-JUN-2020) Bacterial Surveillance and Response, RIVM,
            Antonie van Leeuwenhoeklaan 9, Bilthoven 3721 MA, Netherlands
COMMENT     ##Genome-Annotation-Data-START##
            Annotation Provider          :: NCBI RefSeq
            Annotation Name              :: GCF_015511235.1-RS_2024_05_08
            Annotation Date              :: 05/08/2024 04:52:14
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision :: 6.7
            Features Annotated           :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                :: 5
            CDSs (total)                 :: 5
            Genes (coding)               :: 5
            CDSs (with protein)          :: 5
            Genes (RNA)                  :: 0
            tRNAs                        :: 0
            ncRNAs                       :: 0
            Pseudo Genes (total)         :: 0
            CDSs (without protein)       :: 0
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            MT560069.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..3223
                     /organism="Klebsiella pneumoniae"
                     /mol_type="genomic DNA"
                     /strain="RIVM_C014947"
                     /db_xref="taxon:573"
                     /plasmid="pRIVM_C014947_6"
     gene            complement(join(3189..3223,1..289))
                     /locus_tag="I0P75_RS00010"
     CDS             complement(join(3189..3223,1..289))
                     /locus_tag="I0P75_RS00010"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000957083.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MobC family plasmid mobilization relaxosome
                     protein"
                     /protein_id="WP_004193914.1"
                     /translation="MLTMWVTEDEHRRLLERCEGKQLAAWMRQTCLDEKPARAGKLPSI
                     SPALLRQLAGMGNNLNQIARQVNAGGGSGHDRVQIVAALMAIDAGLERLRHAVLEKGAD
                     DDR"
                     /name="MobC family plasmid mobilization relaxosome protein"
     gene            928..1098
                     /locus_tag="I0P75_RS00015"
                     /old_locus_tag="PMIDBGBA_05666"
     CDS             928..1098
                     /locus_tag="I0P75_RS00015"
                     /old_locus_tag="PMIDBGBA_05666"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005761324.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_004193911.1"
                     /translation="MHEPPVQSDYHARSGNYQLESNPERHDKSPVAVAIGNWVHGAEIV
                     ENAYRVLEVKA"
                     /name="hypothetical protein"
     gene            complement(1307..1639)
                     /locus_tag="I0P75_RS00020"
     CDS             complement(1307..1639)
                     /locus_tag="I0P75_RS00020"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008784643.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="EmrE family multidrug efflux SMR transporter"
                     /protein_id="WP_016807542.1"
                     /translation="MNTYIFLGGAIVAEVIGTIFMKYSEGFTRLWPSVGTAISYCAAFY
                     LLSQTLENIPTGIAYAIWSGAGIVLISLAGWLVSGQKLDWPAIAGMFLICVGVLVINIF
                     SKSSAH"
                     /name="EmrE family multidrug efflux SMR transporter"
     gene            complement(1807..2022)
                     /locus_tag="I0P75_RS00025"
                     /old_locus_tag="PMIDBGBA_05667"
     CDS             complement(1807..2022)
                     /locus_tag="I0P75_RS00025"
                     /old_locus_tag="PMIDBGBA_05667"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000137421.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MbeD family mobilization/exclusion protein"
                     /protein_id="WP_024195375.1"
                     /translation="MTELEKQLLSALEQLQQDYSKRLDEWENAFAEWRTMSGLIQRENA
                     ALNERVTVLSRQVQSLSEQLRRLSKG"
                     /name="MbeD family mobilization/exclusion protein"
     gene            complement(2026..2511)
                     /locus_tag="I0P75_RS00030"
                     /old_locus_tag="PMIDBGBA_05668"
     CDS             complement(2026..2511)
                     /locus_tag="I0P75_RS00030"
                     /old_locus_tag="PMIDBGBA_05668"
                     /inference="COORDINATES: protein motif:HMM:NF016710.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MbeB family mobilization protein"
                     /protein_id="WP_025367738.1"
                     /translation="MNSLLTLAKDLEQKSKAQQQTTGEMLKAAFSEHEKSVRAELSESE
                     KRISAAILDHDRKLSSAMSQRTKGMLRMVSQTWLTIVLVSALLIASSAGILWWQGQQIL
                     ENYTTIREQKSTQAMLSERNSGVQLSTCGEQRRRCVRVNPEAGQFGEDSSWMILAGK"
                     /name="MbeB family mobilization protein"
     ARG             complement(1308..1639)
                     /name="qacG"
                     /gene="qacG"
                     /gene_name="small multidrug resistance (SMR) antibiotic
                     efflux pump"
                     /tool="rgi"
                     /drug_class="disinfecting agents and antiseptics"
                     /identity="41.35"
                     /coverage="102.8"
     Typing          complement(386..577)
                     /name="MOB_unknown"
                     /typing="oriT"
                     /tool="MOB-suite"
                     /identity="91.795"
                     /coverage="89.0"
                     /evalue="1.57e-69"
     Typing          557..1040
                     /name="ColRNAI_rep_cluster_1987"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="84.756"
                     /coverage="93.0"
                     /evalue="1.73e-132"
     Typing          complement(3..289)
                     /name="MOBP"
                     /typing="relaxase"
                     /tool="MOB-suite"
                     /identity="96.875"
                     /coverage="90.0"
                     /evalue="1.4500000000000002e-56"
     Typing          complement(1710..3199)
                     /name="MOBP"
                     /typing="relaxase"
                     /tool="MOB-suite"
                     /identity="91.784"
                     /coverage="100.0"
                     /evalue="0.0"
ORIGIN
        1 catgccgcaa ccgctcgagt ccggcatcga tggccatcag cgcggcgaca atctgcacgc
       61 ggtcgtgtcc gcttccacca ccggcgttaa cctggcgggc aatctggtta aggttgttcc
      121 ccatgccggc aagctgacga agcagcgccg gcgagatcga cggaagtttg ccggcgcgtg
      181 cgggcttctc gtccaggcac gtctgccgca tccaggccgc gagttgctta ccctcgcagc
      241 gctccagcag acgccggtgc tcgtcctcag tcacccacat ggtgagcatt ttgctgcgtt
      301 tgtctgccaa tccggcctcc tgataacgcc gggacggacg ggaaatcttt tcccggtcgg
      361 cacggtgttg gacaagccgc aggcgcggca gtggttttag cgggtttcgg ggcgcagccc
      421 tgaaccagtc acgtagcgct agcggagtgt atactagcta aacatgttat gacggagtgg
      481 caatttatga aagtgcttca tgtgacaggg gaaaaatgcg gctgccgggc gtaagtgcaa
      541 aatgcaggtg gtgatgaaat gacgcctcct cgctcactcg gtcgctacgc tcctgccgtg
      601 agactgcggc gggcgttacc agctcacaga ttacgggata agcaaatgcc gctcgaagca
      661 ggaaaggcca agaaaaggat gcggagttgc cgtttttcca taggctccgc ccccctgacg
      721 agtatcacga aaatgacgct caaatcagcg gtggcgaaac ccgatgcggc ttaaagatac
      781 caggcgtttc cccctggtgg ctccctcgtg ctcccccgca ttcctgcctt tcggtttacc
      841 ggtgtcattc cgctgttatg gccgcggttt ctcattccac gcctgaaact cggttccggg
      901 taggcagttc gctccaggat ggactgtatg cacgaacccc ccgttcagtc cgactaccac
      961 gcccgttccg gtaactatca acttgagtcc aacccggaaa gacacgacaa atcgccagtg
     1021 gcggtagcca ttggtaactg ggttcacgga gcagagattg tagagaatgc ctacagagtt
     1081 cttgaagtga aagcctgagt gcggctacac tgaaaggaca gtttaggtat ctgcgctccg
     1141 tgaaagccag ttaccatcgg aacaaagagt tggtagctct gaattccggc aaacgaacca
     1201 ccgttggtag cggtggtttt tttgtttaca gggaaaaaga ttacgcgcag aaagaaagga
     1261 tctcaaggaa atccttttgc tttggccaat atgcttcggt aaaaagttaa tgcgcagaag
     1321 attttgaaaa aatattaata accaaaactc caacgcaaat aaggaacatt cctgcaattg
     1381 cgggccaatc aagtttttga ccgctaacca accaaccagc taggcttatt agtacaattc
     1441 ccgcaccaga ccaaattgcg taagcaatac cggtaggtat attttccaat gtttgggaaa
     1501 gcagataaaa ggcagcgcaa taacttattg cagttcctac agacggccac aggcgtgtaa
     1561 atccttctga atatttcata aagatggtgc ctatgacttc agccacaata gcccctccca
     1621 ggaaaatata tgtattcata aaaatacctc atgttgaaaa atttaaatat ctttacataa
     1681 caactaatta atagaacccg gcttatcata gcgaaggacc atgatgctgc cactgcgatc
     1741 gttccagctc cagcgctttc tggtgctgca ccgcccgctc ctgctgccgg tgagtttcta
     1801 tcgcgttcag cctttcgaca accggcgcag ctgctcgctc aaactctgca cctgcctgct
     1861 caagaccgtg acgcgctcgt tcagcgccgc gttctcccgt tgaataagac cagacatcgt
     1921 ccgccattcc gcgaaggcgt tctcccactc gtccagcctt ttcgagtagt cctgctgtag
     1981 ctgctctaat gcgctcagca actgtttttc cagctccgtc atgtgctatt tccccgccag
     2041 tatcatccag ctcgagtcct ctccgaactg tcccgcttcc gggttcaccc tcacgcagcg
     2101 gcgtctctgc tcgccgcagg tcgagagctg tacgccgctg ttcctctctg acagcatggc
     2161 ctgcgtgctc ttctgctccc ggatggtcgt atagttctcg agtatctgct gcccctgcca
     2221 ccacagaatg cccgcgctcg acgctatcag cagcgcggag accagaacga tggtcagcca
     2281 cgtctggctg accatgcgca gcatcccttt cgtgcgctgg ctcatggctg aggacagctt
     2341 ccggtcgtgg tcgaggatgg cggcgctgat tctcttctcg ctttcgctca gttccgctct
     2401 gacagacttc tcgtgctcgc tgaatgcggc tttcagcatc tcgccggtag tctgctgctg
     2461 cgctttcgat ttctgctcta agtccttcgc cagcgttaaa agactgttca tagatggctc
     2521 ccttcagtcg gatgtttcgc cccccgtccg ggtcggcaat gctgatgctg ctttttgtgg
     2581 tgcgcaccac ctcaaaacct gcgctttcca gcgcctcagt gacgtcctga cgcgttttca
     2641 gctccccgga tgaggcaagg gcaagcaggc cgctcgtaat cgcctgggcg gcttcctgct
     2701 tcgcttccgg cagcgcggaa ggcgagacca gcacccgccg gttctccggc gcgttcgggt
     2761 catgcagccc cagcctgccg ttcactatgg tctgccaggc atcgatgcgc ggacggtcgg
     2821 cgcggtcgta atacggctgt agccgcttgc cggtcagaag ctccgtgttc gggatcagga
     2881 agttcagctc cagccgcccc ttgtcccggt gctcaaccca cagcacgctg tactggtctt
     2941 tatcgagtcc gggcatcaga acccgctcga aactcgccat cagcttttcg cgctggccgg
     3001 gcggtaaatc ctgttcggca aaagacagaa cgccggaagt gtactttttg gcgtagggcg
     3061 aggcgtcgat aagctcccgg acttcatccg gcttcccctg cagaacgctg gcgccgtcgc
     3121 gctggcgatc tttacccagc agataatcga ccggcccgcc gccgccgccg cgcccccgag
     3181 gatgaaactt aacgatcatc atcagcaccc ttttccagta cgg
//
