LOCUS       NZ_MT349898             2683 bp    DNA     circular CON 18-JAN-2024
DEFINITION  Proteus mirabilis plasmid pSCSZC10-qnrD1, complete sequence.
ACCESSION   NZ_MT349898
VERSION     NZ_MT349898.1
DBLINK      BioProject: PRJNA224116
KEYWORDS    RefSeq.
SOURCE      Proteus mirabilis
  ORGANISM  Proteus mirabilis
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Morganellaceae; Proteus.
REFERENCE   1  (bases 1 to 2683)
  AUTHORS   Lei,C.W. and Wang,H.N.
  TITLE     Diversity of qnrD-harboring plasmids in Proteus mirabilis
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2683)
  AUTHORS   Lei,C.W. and Wang,H.N.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-APR-2020) College of Life science, Sichuan University,
            NO. 29 Wangjiang Road, Chengdu, Sichuan 610064, China
COMMENT     ##Assembly-Data-START##
            Assembly Method              :: SPAdes v. 3.12.0
            Coverage                     :: 100X
            Sequencing Technology        :: Sanger dideoxy sequencing; Illumina
            ##Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider          :: NCBI RefSeq
            Annotation Date              :: 01/18/2024 05:11:30
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision :: 6.6
            Features Annotated           :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                :: 2
            CDSs (total)                 :: 2
            Genes (coding)               :: 2
            CDSs (with protein)          :: 2
            Genes (RNA)                  :: 0
            tRNAs                        :: 0
            ncRNAs                       :: 0
            Pseudo Genes (total)         :: 0
            CDSs (without protein)       :: 0
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            MT349898.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..2683
                     /organism="Proteus mirabilis"
                     /mol_type="genomic DNA"
                     /isolation_source="swine"
                     /db_xref="taxon:584"
                     /plasmid="pSCSZC10-qnrD1"
                     /geo_loc_name="China"
                     /collection_date="2017"
     gene            922..1566
                     /locus_tag="LZK07_RS00005"
     CDS             922..1566
                     /locus_tag="LZK07_RS00005"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_032495680.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="quinolone resistance pentapeptide repeat protein
                     QnrD1"
                     /protein_id="WP_012634451.1"
                     /translation="MEKHFINEKFSRDQFTGNRVKNIAFSNCDFSGVDLTDTEFVDCSF
                     YDRNSLEGCDFNRAKLKNASFKSCDLSMSNFKNISALGLEISECLAQGADFRGANFMNM
                     ITTRSWFCSAYITKTNLSYANFSRVILEKCELWENRWNGTVITGAVFRGSDLSCGEFSS
                     FDWSLADFTGCDLTGGALGELDARRINLDGVKLDGEQALQLVESLGVIVHR"
                     /name="quinolone resistance pentapeptide repeat protein
                     QnrD1"
     gene            2204..2644
                     /locus_tag="LZK07_RS00010"
     CDS             2204..2644
                     /locus_tag="LZK07_RS00010"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_015063446.1"
                     /translation="MSQLFRLASPEDYEYIEELNLWELSFDKRPVQGVRCEDPVIGAEK
                     YNQGREKFKALASRHKKHWKPNGLTFSELIRWAIECGTPEQCQLVLALYHCTNDDDYQA
                     MGIQLSRSIDNANVSPIIFFTGKNQRLLGDISMLKQLEEKVR"
                     /name="hypothetical protein"
     ARG             923..1563
                     /name="qnrD1"
                     /gene="qnrD1"
                     /gene_name="quinolone resistance pentapeptide repeat
                     protein QnrD1"
                     /tool="amrfinderplus"
                     /drug_class="QUINOLONE"
                     /identity="100.0"
                     /coverage="100.0"
     Typing          673..828
                     /name="Col3M"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="98.089"
                     /coverage="100.0"
                     /evalue="2.29e-71"
ORIGIN
        1 ttattctatc tcttatttta tctatttcgt ctgtaatagg tagaataata catagaataa
       61 gatacagaat aatagataga cacaagatga cgttgtgtta tttcttaccc attaatccac
      121 ctgttattct acctattact ttacccgtta ttgcacccaa tttaggtata acgggcagaa
      181 taacgggtga aataatgggt agaatcatag ttttactaac ttgcacccca tgatactttc
      241 agtatcaatg ccactcattt tctggacgaa aatgaatgac ataaggctcc gccctctggc
      301 tattttcttc ggctggacgc ctgcgaaaaa aaccattcac ccaagcccgt caaactcact
      361 gcgttcgtct gaccaccccc ttttttcgcc cctgtatttg gtcgctcaaa aatgtggtgg
      421 tcagacgctt cgcttgacgg ggggctttgc ccccaaaacg aaacacgttc actggggttc
      481 acttgccatc gctggggcgt gtcatttcgt ttcggctccc cctgtttttc cctttcttcg
      541 ctggacgctc atcaggataa aaacaaaaag cctaccgccc tcgttttact cggttggtca
      601 aatcgcttct tgccacaaaa caagtttgtg actttcagcg atttcgcatc gttttacttg
      661 tcagtttgca cgatgttaaa aacgcactca gaagcccgca aaaccgttct aaactttcag
      721 cgtagatttg ggtgttttat agggtgatcg tgtcttaaaa tcgtttcgag gggctttaat
      781 ggggatgaac gggaggtttt tgctaactaa ctcgcccgtt taacataaaa gggattgtat
      841 gaatcaattt tagctagagt ttaaggttgt tcaaattaat gtacaatgat tgcactgtat
      901 aaataaccag gtgtagcatg tatggaaaag cactttatca atgaaaagtt ttcacgagat
      961 caatttacgg ggaatagagt taaaaatatt gccttttcaa attgtgattt ttcaggggtt
     1021 gatttaactg atactgaatt tgttgattgt agtttttacg acaggaatag cttggaaggg
     1081 tgtgatttta atagagccaa actaaaaaac gctagcttta aaagctgcga tttatcaatg
     1141 agtaatttta aaaacattag cgccttaggt cttgaaatta gtgagtgttt agctcaagga
     1201 gctgattttc gaggggctaa ttttatgaat atgataacta caaggtcatg gttttgtagt
     1261 gcttatataa ccaagacaaa tcttagttac gctaattttt ctagagtcat attagaaaag
     1321 tgcgaactgt gggaaaatcg ctggaatggc actgtgataa ctggcgccgt gtttcgtggc
     1381 tccgatcttt cttgtgggga gttttcatcg tttgattggt ctttggctga ttttactggt
     1441 tgtgatttaa cgggtggggc gcttggcgag cttgatgcaa ggcgaattaa tttagatgga
     1501 gtgaagttgg atggagagca ggcgcttcag cttgttgaga gtttaggtgt tattgttcac
     1561 cgataaaatc taggtaaaaa acgcctaatg ccccaatgtg gtactaatca aaacggagcg
     1621 aagcgacatc ttcatcttgt ctttgctttt ctccatgatc agttattggg tcatggtctc
     1681 ttagctcgtt aatctggcta agtttggtta ggttgggctt ctttcgacac ttcgcaatcc
     1741 aagaaatccc tagtccgttg attggtgctc ttatcaggta cgcactgtaa tctttcgata
     1801 ccgcagcgtg attcggaggt agagccggaa tttcgttttc cggtacgttt tactaccaca
     1861 atttgcctgt ttatcctttc ggagaccggg ctaagtccga gtcaatcaag tggtgcattt
     1921 gggttaatgt cgttggctgg tatttaatga gaacgtgaca agcgcctctc acgttgctaa
     1981 gattggattg cgacgtctaa tctgagcaac gaatgcacaa gatttagagt accagagccc
     2041 tgtgatgctg tcacggggct ttgttacatc tggagcttgg taaacctcat aaattcaatt
     2101 cgcaacgctc gccgcaaggc gtgaacttgt ttcacgtcga ggaagcggaa tttctcgaaa
     2161 gccttatact gtctccgttc acacatgatc ggagggtgtc tctatgtctc aattatttcg
     2221 tttggcatcg ccagaagatt acgaatacat cgaagaatta aatttatggg aattgtcatt
     2281 tgataagcga ccggttcaag gggttcgttg tgaagatccg gtgatcgggg cagaaaaata
     2341 taatcaaggg cgtgaaaaat ttaaggcgtt agcgtcacgg cataaaaaac actggaaacc
     2401 gaacggattg accttttcgg agttgatccg ctgggcaata gaatgcggaa ctccagaaca
     2461 atgtcagctt gttttagcgt tataccattg cacaaacgat gatgattatc aggcgatggg
     2521 aattcagtta agccgaagta ttgataatgc aaatgtcagt ccgatcatct ttttcacagg
     2581 taaaaatcaa cggttattag gtgatatttc gatgctaaaa cagctcgaag aaaaggtgcg
     2641 ctgacgttag gtttacctat tattttatgt attatcctat cta
//
