LOCUS       NZ_MT162144             1917 bp    DNA     circular CON 02-JUL-2023
DEFINITION  Escherichia coli strain CE1537 plasmid pCE1537-F, complete sequence.
ACCESSION   NZ_MT162144
VERSION     NZ_MT162144.1
DBLINK      BioProject: PRJNA224116
KEYWORDS    RefSeq.
SOURCE      Escherichia coli
  ORGANISM  Escherichia coli
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Escherichia.
REFERENCE   1  (bases 1 to 1917)
  AUTHORS   Tarabai,H., Wyrsch,E.R., Bitar,I., Djordjevic,S.P. and Dolejska,M.
  TITLE     Comparative analysis of multidrug resistant Escherichia coli ST216
            isolates from silver gulls in Australia
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 1917)
  AUTHORS   Tarabai,H., Wyrsch,E.R., Bitar,I., Djordjevic,S.P. and Dolejska,M.
  TITLE     Direct Submission
  JOURNAL   Submitted (09-MAR-2020) Department of Biology and Wildlife Diseases,
            University of Veterinary and Pharmaceutical Sciences Brno, Palackeho
            tr. 1946/1, Brno, Brno 61242, Czech Republic
COMMENT     ##Assembly-Data-START##
            Assembly Method              :: SMRT Link v. 8.0
            Assembly Name                :: pCE1537-F
            Coverage                     :: 317X
            Sequencing Technology        :: PacBio
            ##Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider          :: NCBI RefSeq
            Annotation Date              :: 07/02/2023 04:29:55
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision :: 6.5
            Features Annotated           :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                :: 3
            CDSs (total)                 :: 3
            Genes (coding)               :: 3
            CDSs (with protein)          :: 3
            Genes (RNA)                  :: 0
            tRNAs                        :: 0
            ncRNAs                       :: 0
            Pseudo Genes (total)         :: 0
            CDSs (without protein)       :: 0
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            MT162144.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1917
                     /organism="Escherichia coli"
                     /mol_type="genomic DNA"
                     /strain="CE1537"
                     /isolation_source="cloacal sample"
                     /host="Chroicocephalus novaehollandiae"
                     /db_xref="taxon:562"
                     /plasmid="pCE1537-F"
                     /geo_loc_name="Australia"
                     /collection_date="2012"
                     /type="Col440I plasmid"
                     /genotype="ST216"
                     /note="Bioproject: PRJEB21464"
     gene            join(1623..1917,1..8)
                     /locus_tag="NFI85_RS00005"
                     /old_locus_tag="JNG16_RS00005"
                     /old_locus_tag="KOI44_RS00005"
     CDS             join(1623..1917,1..8)
                     /locus_tag="NFI85_RS00005"
                     /old_locus_tag="JNG16_RS00005"
                     /old_locus_tag="KOI44_RS00005"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005161566.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TM2 domain-containing protein"
                     /protein_id="WP_031942343.1"
                     /translation="MSSMVYCRGCGKEIHETAKSCPHCGATNASSGSGEKSRIAAALLA
                     FFLGGFGAHKFYLGKIGQGFLYLIFCWTFIPAIIAFIEFIIYLCDSDEKFARKYG"
                     /name="TM2 domain-containing protein"
     gene            complement(264..500)
                     /locus_tag="NFI85_RS00010"
                     /old_locus_tag="JNG16_RS00010"
                     /old_locus_tag="KOI44_RS00010"
     CDS             complement(264..500)
                     /locus_tag="NFI85_RS00010"
                     /old_locus_tag="JNG16_RS00010"
                     /old_locus_tag="KOI44_RS00010"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001676031.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_031942344.1"
                     /translation="MTRLTNLTPAEKQFLDDAVAAAERASGKKLNQPNRHIVLNRARAQ
                     IESQRHADRQRALREEERQQAEFTWSRPRSPRR"
                     /name="hypothetical protein"
     gene            1201..1314
                     /locus_tag="NFI85_RS00015"
                     /old_locus_tag="JNG16_RS00015"
                     /old_locus_tag="KOI44_RS00015"
     CDS             1201..1314
                     /locus_tag="NFI85_RS00015"
                     /old_locus_tag="JNG16_RS00015"
                     /old_locus_tag="KOI44_RS00015"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005761324.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_032634168.1"
                     /translation="MHEPPVQSDCCALSGNYRLESNPERHAKAPLAAATGN"
                     /name="hypothetical protein"
     Typing          complement(667..840)
                     /name="MOBP"
                     /typing="oriT"
                     /tool="MOB-suite"
                     /identity="100.0"
                     /coverage="100.0"
                     /evalue="2.5600000000000002e-86"
     Typing          826..1310
                     /name="rep_cluster_2335"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="93.648"
                     /coverage="80.0"
                     /evalue="0.0"
ORIGIN
        1 atggctaact catagcaaaa aagccctgcg gggctttttt tgtaccagtc tgtgaggcac
       61 atttaccata acatccctta tcggtaccgc ctaagacgct ctcagcgcgt ttctgcggcc
      121 tcatgccgat ttccggcacc tttccccggg gaaaaccccg aaaaacgttc ctgatgattt
      181 ctgcgcgtct gcatggctat gcacggaaat gccttgcctg cagtttcatc acaaaactgc
      241 agcagaaacc tcataacagc cactcaccgg cgcggcgatc gcggacgtga ccaggtaaat
      301 tcggcctgct gccgttcttc ctcacgtaga gcgcgctgcc ggtcggcgtg ccgctgcgac
      361 tcaatctgcg ctcttgcccg gttgagcacg atatgtcggt tcggctggtt gagtttcttg
      421 ccggaagcac gctctgcagc tgcaacagca tcatcaagaa attgcttctc tgccggcgtc
      481 agattggtca gtcgcgtcat gtaggtctcc tgttcagcat cacgctggcc agtctgccag
      541 acaaggtgga agcaatgaag cagcggcgga atgtcagaac catcagaaac ggtgaacggg
      601 agcggatttt aatcaggtgc cgtgaagcgt tgggcaagcc gtcaggcgcg ccagtggtcc
      661 tggcgggttt cggggcgcag ccctgaacca gtcacgtagc gctagcggag tgtatactgg
      721 cttaatatgt tggcacggat gcggatgtca gtgaagtgct tcatgtagca ggagaaaaag
      781 gcggcaccgg cgcgtcagca gaacatgtag taacgggaga tgtgccgctt cctcgctcac
      841 tgactcgctg cgctcggtcg ttcggctgcg gcgagcggta ccggcttacg ggtgaggtgg
      901 aaatttcctg gtggatgcca ggaaggaact taacagggaa acgatgaggc tgcggcgaag
      961 ccgtttttcc ataggctccg cccccctgac aagcatcacg aaatctgacg ctcaaatcag
     1021 tggcggcgaa acccgacagg actataaaga tcccaagggt ttccccctgg tagctccctc
     1081 gtgcgctctc ctgttcctgc ctttcggttt accggtgtca ttccgctgtt atggccgcgg
     1141 tttctcattc cacgcctgac actcagttcc gggtaggcag ttcgctccaa gctggactgt
     1201 atgcacgaac cccccgttca gtccgactgc tgcgccttat ccggtaacta tcgtcttgag
     1261 tccaacccgg aaagacatgc aaaagcgcca ctggcagcag ccactggtaa ctgatttaga
     1321 ggagttagtc ttgaagttat gcgccggtta aggctaaact gaaaggacaa gttttggtga
     1381 ctgcgctcct ccaagccagt tacctcggtt caaagagtta gtagctcaga gaaccttcga
     1441 aaaaccgcct tgctgggcgg ttttttcgtt tccagagcaa gagattacga cgctacagaa
     1501 aggatctcaa gaagatcctt caccataatg gaaatctatc ccacccgagc atataggatg
     1561 catatcgtta taaaacattg gatattatgc atcccaacta aaaataagct cgaggataaa
     1621 aaatgagttc aatggtttac tgccgaggat gcggcaagga aatacacgaa acagcaaagt
     1681 catgcccaca ctgcggagcc acaaacgcct cttcaggttc aggtgaaaaa agtagaatcg
     1741 cagccgcgct attagcattc ttccttggtg gatttggcgc acataaattt tacttaggta
     1801 aaataggaca gggattcctg tatctaattt tttgctggac attcataccc gcgatcatcg
     1861 cgtttattga gtttattatt tatctatgcg attccgatga aaaattcgca agaaaat
//
