LOCUS       NZ_MN251855             2473 bp    DNA     circular CON 08-MAR-2024
DEFINITION  Staphylococcus aureus strain SR100 plasmid pSR100, complete
            sequence.
ACCESSION   NZ_MN251855
VERSION     NZ_MN251855.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN14228876
KEYWORDS    RefSeq.
SOURCE      Staphylococcus aureus
  ORGANISM  Staphylococcus aureus
            Bacteria; Bacillota; Bacilli; Bacillales; Staphylococcaceae;
            Staphylococcus.
REFERENCE   1  (bases 1 to 2473)
  AUTHORS   Chen,Y.
  TITLE     Direct Submission
  JOURNAL   Submitted (28-JUL-2019) Infectious Diseases, Sir Run Run Shaw
            Hospital, School of Medicine, Zhejiang University, 3 East Qingchun
            Road, Hangzhou, Zhejiang 310016, China
COMMENT     ##Assembly-Data-START##
            Assembly Method              :: CLC workbench v. 7.5.1
            Assembly Name                :: pSR100
            Sequencing Technology        :: Illumina
            ##Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider          :: NCBI RefSeq
            Annotation Date              :: 03/08/2024 01:12:08
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision :: 6.6
            Features Annotated           :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                :: 3
            CDSs (total)                 :: 3
            Genes (coding)               :: 3
            CDSs (with protein)          :: 3
            Genes (RNA)                  :: 0
            tRNAs                        :: 0
            ncRNAs                       :: 0
            Pseudo Genes (total)         :: 0
            CDSs (without protein)       :: 0
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            MN251855.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..2473
                     /organism="Staphylococcus aureus"
                     /mol_type="genomic DNA"
                     /strain="SR100"
                     /isolation_source="urine"
                     /db_xref="taxon:1280"
                     /plasmid="pSR100"
     gene            join(2095..2473,1..98)
                     /locus_tag="HTX16_RS00005"
     CDS             join(2095..2473,1..98)
                     /locus_tag="HTX16_RS00005"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000664727.1"
                     /GO_process="GO:0006260 - DNA replication [Evidence IEA];
                     GO:0006276 - plasmid maintenance [Evidence IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="replication/maintenance protein RepL"
                     /protein_id="WP_172694661.1"
                     /translation="MKERYGTVYKGSQRLIDEESGEVIEVDKLYRKQTSGNFVKAYIVQ
                     LISMLDMIGGKKLKIVNYILDNVHLSNNTMIATTREIAXATGTSLQTVITTLKILEEGN
                     IIKRKTGVLMLNPELLMRGDDQKQKYLLLEFGNFEQEANEKQENALSDYYSFKD"
                     /name="replication/maintenance protein RepL"
     gene            793..852
                     /gene="ermCL"
                     /locus_tag="HTX16_RS00010"
     CDS             793..852
                     /gene="ermCL"
                     /locus_tag="HTX16_RS00010"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002497446.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="23S rRNA methylase leader peptide ErmCL"
                     /protein_id="WP_002497446.1"
                     /translation="MGIFSIFVISTVHYQPNKK"
                     /name="ermCL"
     gene            913..1647
                     /gene="erm(C)"
                     /locus_tag="HTX16_RS00015"
     ARG             914..1644
                     /name="erm(C)"
                     /gene="erm(C)"
                     /gene_name="23S rRNA (adenine(2058)-N(6))-methyltransferase
                     Erm(C)"
                     /tool="amrfinderplus"
                     /drug_class="LINCOSAMIDE/MACROLIDE/STREPTOGRAMIN"
                     /identity="100.0"
                     /coverage="100.0"
     ARG             914..1647
                     /name="ErmC"
                     /gene="ErmC"
                     /gene_name="Erm 23S ribosomal RNA methyltransferase"
                     /tool="rgi"
                     /drug_class="macrolide antibiotic; lincosamide antibiotic;
                     streptogramin antibiotic; streptogramin A antibiotic;
                     streptogramin B antibiotic"
                     /identity="99.59"
                     /coverage="100.0"
     Typing          2096..2473
                     /name="rep_cluster_1947"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="99.472"
                     /coverage="100.0"
                     /evalue="0.0"
ORIGIN
        1 aacaaaaata cctcttactc gaatttggga actttgagca agaggcaaat gaaaaacaag
       61 aaaatgcatt atctgattat tattctttca aggactagta taacataaaa tcgtctacaa
      121 atagacaaaa aacctgcacg cttaatgtag atcaaaagct taacgcaaat gaaatagatt
      181 gacctcccaa taacaccacg tagttattgg gaggtcaatc tatgaaatgc gattaagctt
      241 tttctaattc acataagcgt gcaggtttaa agtacataaa aaatataatg aaaaaaagca
      301 tcattatact aacgttatac caacattata ctctcattat actaattgct tattccaatt
      361 tcctattggt tggaaccaac aggcgttagt gtgttgttga gttggtactt tcatgggatt
      421 aatcccatga aacccccaac caactcgcca aagctttggc taacacacac gccattccaa
      481 ccaatagttt tctcggcata aagccatgct ctgacgctta aatgcactaa tgccttaaaa
      541 aaacattaaa gtctaacaca ctagacttat ttacttcgta attaagtcgt taaaccgtgt
      601 gctctacgac caaaagtata aaacctttaa gaactttctt ttttcttgta aaaaaagaaa
      661 ctagataaat ctctcatatc ttttattcaa taatcgcatc agattgcagt ataaatttaa
      721 cgatcactca tcatgttcat atttatcaga gctcgtgcta taattatact aattttataa
      781 ggaggaaaaa atatgggcat ttttagtatt tttgtaatca gcacagttca ttatcaacca
      841 aacaaaaaat aagtggttat aatgaatcgt taataagcaa aattcattat aaccaaatta
      901 aagagggtta taatgaacga gaaaaatata aaacacagtc aaaactttat tacttcaaaa
      961 cataatatag ataaaataat gacaaatata agattaaatg aacatgataa tatctttgaa
     1021 atcggctcag gaaaagggca ttttaccctt gaattagtac agaggtgtaa tttcgtaact
     1081 gccattgaaa tagaccataa attatgcaaa actacagaaa ataaacttgt tgatcacgat
     1141 aatttccaag ttttaaacaa ggatatattg cagtttaaat ttcctaaaaa ccaatcctat
     1201 aaaatatttg gtaatatacc ttataacata agtacggata taatacgcaa aattgttttt
     1261 gatagtatag ctgatgagat ttatttaatc gtggaatacg ggtttgctaa aagattatta
     1321 aatacaaaac gctcattggc attattttta atggcagaag ttgatatttc tatattaagt
     1381 atggttccaa gagaatattt tcatcctaaa cctaaagtga atagctcact tatcagatta
     1441 aatagaaaaa aatcaagaat atcacacaaa gataaacaga agtataatta tttcgttatg
     1501 aaatgggtta acaaagaata caagaaaata tttacaaaaa atcaatttaa caattcctta
     1561 aaacatgcag gaattgacga tttaaacaat attagctttg aacaattctt atctcttttc
     1621 aatagctata aattatttaa taagtaagtt aagggatgca taaactgcat cccttaactt
     1681 gtttttcgtg tacctatttt ttgtgaatcg attatgtctt ttgcgcattc acttcttttc
     1741 tatataaata tgagcgaagc gaataagcgt cggaaaagca gcaaaaagtt tcctttttgc
     1801 tgttggagca tgggggttca gggggtgcag tatctgacgt caatgccgag cgaaagcgag
     1861 ccgaagggta gcatttacgt tagataaccc cctgatatgc tccgacgctt tatatagaaa
     1921 agaagattca actaggtaaa atcttaatat aggttgagat gataaggttt ataaggaatt
     1981 tgtttgttct aatttttcac tcattttgtt ctaatttctt ttaacaaatg ttcttttttt
     2041 tttagaacag ttatgatata gttagaatag tttaaaataa ggagtgagaa aaagatgaaa
     2101 gaaagatatg gaacagtcta taaaggctct cagaggctca tagacgaaga aagtggagaa
     2161 gtcatagagg tagacaagtt ataccgtaaa caaacgtctg gtaacttcgt aaaggcatat
     2221 atagtgcaat taataagtat gttagatatg attggcggaa aaaaacttaa aatcgttaac
     2281 tatatcctag ataatgtcca cttaagtaac aatacaatga tagctacaac aagagaaata
     2341 gcawwagcta caggaacaag tctacaaaca gtaataacaa cacttaaaat cttagaagaa
     2401 ggaaatatta taaaaagaaa aactggagta ttaatgttaa accctgaact actaatgaga
     2461 ggcgacgacc aaa
//
