LOCUS       NZ_MN216340             2462 bp    DNA     circular CON 13-SEP-2023
DEFINITION  Staphylococcus aureus strain SR42 plasmid pSR42, complete sequence.
ACCESSION   NZ_MN216340
VERSION     NZ_MN216340.1
DBLINK      BioProject: PRJNA224116
KEYWORDS    RefSeq.
SOURCE      Staphylococcus aureus
  ORGANISM  Staphylococcus aureus
            Bacteria; Bacillota; Bacilli; Bacillales; Staphylococcaceae;
            Staphylococcus.
REFERENCE   1  (bases 1 to 2462)
  AUTHORS   Chen,Y.
  TITLE     Direct Submission
  JOURNAL   Submitted (24-JUL-2019) Infectious Diseases, Sir Run Run Shaw
            Hospital, School of Medicine, Zhejiang University, 3 East Qingchun
            Road, Hangzhou, Zhejiang 310016, China
COMMENT     ##Assembly-Data-START##
            Assembly Method              :: CLC workbench v. 7.5.1
            Assembly Name                :: pSR42
            Sequencing Technology        :: Illumina
            ##Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider          :: NCBI RefSeq
            Annotation Date              :: 09/13/2023 01:39:21
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision :: 6.6
            Features Annotated           :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                :: 3
            CDSs (total)                 :: 3
            Genes (coding)               :: 3
            CDSs (with protein)          :: 3
            Genes (RNA)                  :: 0
            tRNAs                        :: 0
            ncRNAs                       :: 0
            Pseudo Genes (total)         :: 0
            CDSs (without protein)       :: 0
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            MN216340.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..2462
                     /organism="Staphylococcus aureus"
                     /mol_type="genomic DNA"
                     /strain="SR42"
                     /isolation_source="pus"
                     /db_xref="taxon:1280"
                     /plasmid="pSR42"
     gene            complement(join(2163..2462,1..177))
                     /locus_tag="H5D08_RS00005"
     CDS             complement(join(2163..2462,1..177))
                     /locus_tag="H5D08_RS00005"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000664727.1"
                     /GO_process="GO:0006260 - DNA replication [Evidence IEA];
                     GO:0006276 - plasmid maintenance [Evidence IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="replication/maintenance protein RepL"
                     /protein_id="WP_000664727.1"
                     /translation="MKERYGTVYKGSQRLIDEESGEVIEVDKLYRKQTSGNFVKAYIVQ
                     LISMLDMIGGKKLKIVNYILDNVHLSNNTMIATTREIAKATGTSLQTVITTLKILEEGN
                     IIKRKTGVLMLNPELLMRGDDQKQKYLLLEFGNFEQEANEKQENALSDYYSFKD"
                     /name="replication/maintenance protein RepL"
     gene            complement(625..1359)
                     /gene="erm(C)"
                     /locus_tag="H5D08_RS00010"
     ARG             complement(629..1359)
                     /name="erm(C)"
                     /gene="erm(C)"
                     /gene_name="23S rRNA (adenine(2058)-N(6))-methyltransferase
                     Erm(C)"
                     /tool="amrfinderplus"
                     /drug_class="LINCOSAMIDE/MACROLIDE/STREPTOGRAMIN"
                     /identity="100.0"
                     /coverage="100.0"
     gene            complement(1420..1479)
                     /gene="ermCL"
                     /locus_tag="H5D08_RS00015"
     CDS             complement(1420..1479)
                     /gene="ermCL"
                     /locus_tag="H5D08_RS00015"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002497446.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="23S rRNA methylase leader peptide ErmCL"
                     /protein_id="WP_002497446.1"
                     /translation="MGIFSIFVISTVHYQPNKK"
                     /name="ermCL"
     ARG             complement(626..1359)
                     /name="ErmC"
                     /gene="ErmC"
                     /gene_name="Erm 23S ribosomal RNA methyltransferase"
                     /tool="rgi"
                     /drug_class="macrolide antibiotic; lincosamide antibiotic;
                     streptogramin antibiotic; streptogramin A antibiotic;
                     streptogramin B antibiotic"
                     /identity="99.59"
                     /coverage="100.0"
     Typing          complement(2..177)
                     /name="rep_cluster_1947"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="100.0"
                     /coverage="100.0"
                     /evalue="6.06e-87"
     Typing          complement(2164..2459)
                     /name="rep_cluster_1947"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="84.564"
                     /coverage="99.0"
                     /evalue="6.14e-77"
ORIGIN
        1 tttaagtttt tttccgccaa tcatatctaa catacttatt aattgcacta tatatgcctt
       61 tacgaagtta ccagacgttt gtttacggta taacttgtct acctctatga cttctccact
      121 ttcttcgtct atgagcctct gagagccttt atagactgtt ccatatcttt ctttcatctt
      181 tttctcactc cttattttaa actattctaa ctatatcata actgttctaa aaaaaaaaga
      241 acatttgtta aaagaaatta gaacaaaatg agtgaaaaat tagaacaaac aaattcctta
      301 taaaccttat catctcaacc tatattaaga ttttacctag ttgaatcttc ttttctatat
      361 aaagcgtcgg agcatatcag ggggttatct aacgtaaatg ctacccttcg gctcgctttc
      421 gctcggcatt gacgtcagat actgcacccc ctgaaccccc atgctccaac agcaaaaagg
      481 aaactttttg ctgcttttcc gacgcttatt cgcttcgctc atatttatat agaaaagaag
      541 tgaatgcgca aaagacataa tcgattcaca aaaaataggt acacgaaaaa caagttaagg
      601 gatgcagttt atgcatccct taacttactt attaaataat ttatagctat tgaaaagaga
      661 taagaattgt tcaaagctaa tattgtttaa atcgtcaatt cctgcatgtt ttaaggaatt
      721 gttaaattga ttttttgtaa atattttctt gtattctttg ttaacccatt tcataacgaa
      781 ataattatac ttctgtttat ctttgtgtga tattcttgat ttttttctat ttaatctgat
      841 aagtgagcta ttcactttag gtttaggatg aaaatattct cttggaacca tacttaatat
      901 agaaatatca acttctgcca ttaaaaataa tgccaatgag cgttttgtat ttaataatct
      961 tttagcaaac ccgtattcca cgattaaata aatctcatca gctatactat caaaaacaat
     1021 tttgcgtatt atatccgtac ttatgttata aggtatatta ccaaatattt tataggattg
     1081 gtttttagga aatttaaact gcaatatatc cttgtttaaa acttggaaat tatcgtgatc
     1141 aacaagttta ttttctgtag ttttgcataa tttatggtct atttcaatgg cagttacgaa
     1201 attacacctc tgtactaatt caagggtaaa atgccctttt cctgagccga tttcaaagat
     1261 attatcatgt tcatttaatc ttatatttgt cattatttta tctatattat gttttgaagt
     1321 aataaagttt tgactgtgtt ttatattttt ctcgttcatt ataaccctct ttaatttggt
     1381 tataatgaat tttgcttatt aacgattcat tataaccact tattttttgt ttggttgata
     1441 atgaactgtg ctgattacaa aaatactaaa aatgcccata ttttttcctc cttataaaat
     1501 tagtataatt atagcacgag ctctgataaa tatgaacatg atgagtgatc gttaaattta
     1561 tactgcaatc tgatgcgatt attgaataaa agatatgaga gatttatcta gtttcttttt
     1621 ttacaagaaa aaagaaagtt cttaaaggtt ttatactttt ggtcgtagag cacacggttt
     1681 aacgacttaa ttacgaagta aataagtcta gtgtgttaga ctttaatgtt tttttaaggc
     1741 attagtgcat ttaagcgtca gagcatggct ttatgccgag aaaactattg gttggaatgg
     1801 cgtgtgtgtt agccaaagct ttggcgagtt ggttgggggt ttcatgggat taatcccatg
     1861 aaagtaccaa ctcaacaaca cactaacgcc tgttggttcc aaccaatagg aaattggaat
     1921 aagcaattag tataatgttg gtataacgtt agtataatga tgcttttttt cattatattt
     1981 tttatgtact ttaaacctgc acgcttatgt gaattagaaa aagcttaatc gcatttcata
     2041 gattgacctc ccaataacta cgtggtgtta ttgggaggtc aatctatttc atttgcgtta
     2101 agcttttgat ctacattaag cgtgcaggtt ttttgtctat ttgtagacga ttttatgtta
     2161 tactagtcct tgaaagaata ataatcagat aatgcatttt cttgtttttc atttgcctct
     2221 tgctcaaagt tcccaaattc gagtaagagg tatttttgtt tttggtcgtc gcctctcatt
     2281 agtagttcag ggtttaacat taatactcca gtttttcttt ttataatatt tccttcttct
     2341 aagattttaa gtgttgttat tactgtttgt agacttgttc ctgtagcttt tgctatttct
     2401 cttgttgtag ctatcattgt attgttactt aagtggacat tatctaggat atagttaacg
     2461 at
//
