LOCUS       NZ_MK388404             1442 bp    DNA     circular CON 21-JUL-2023
DEFINITION  Staphylococcus aureus strain ch10 plasmid pAvY, complete sequence.
ACCESSION   NZ_MK388404
VERSION     NZ_MK388404.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN09846908
KEYWORDS    RefSeq.
SOURCE      Staphylococcus aureus
  ORGANISM  Staphylococcus aureus
            Bacteria; Bacillota; Bacilli; Bacillales; Staphylococcaceae;
            Staphylococcus.
REFERENCE   1  (bases 1 to 1442)
  AUTHORS   Bukowski,M., Piwowarczyk,R., Madry,A., Zagorski-Przybylo,R.,
            Hydzik,M. and Wladyka,B.
  TITLE     Prevalence of Antibiotic and Heavy Metal Resistance Determinants and
            Virulence-Related Genetic Elements in Plasmids of Staphylococcus
            aureus
  JOURNAL   Front Microbiol 10 (2019) In press
  REMARK    Publication Status: Available-Online prior to print
REFERENCE   2  (bases 1 to 1442)
  AUTHORS   Bukowski,M., Hydzik,M., Sabat,A.J. and Wladyka,B.
  TITLE     Direct Submission
  JOURNAL   Submitted (09-JAN-2019) Faculty of Biochemistry, Biophysics and
            Biotechnology, Department of Analytical Biochemistry, Jagiellonian
            University, Gronostajowa 7, Krakow, Malopolskie 30-387, Poland
COMMENT     ##Genome-Annotation-Data-START##
            Annotation Provider          :: NCBI RefSeq
            Annotation Date              :: 07/21/2023 01:27:02
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision :: 6.5
            Features Annotated           :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                :: 1
            CDSs (total)                 :: 1
            Genes (coding)               :: 1
            CDSs (with protein)          :: 1
            Genes (RNA)                  :: 0
            tRNAs                        :: 0
            ncRNAs                       :: 0
            Pseudo Genes (total)         :: 0
            CDSs (without protein)       :: 0
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            MK388404.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1442
                     /organism="Staphylococcus aureus"
                     /mol_type="genomic DNA"
                     /strain="ch10"
                     /isolation_source="sternal bursa"
                     /host="Broiler chicken"
                     /db_xref="taxon:1280"
                     /plasmid="pAvY"
                     /geo_loc_name="USA: Iowa"
                     /collection_date="1999"
     gene            288..1184
                     /locus_tag="D0Y75_RS00005"
                     /old_locus_tag="D0Y75_b00000"
     CDS             288..1184
                     /locus_tag="D0Y75_RS00005"
                     /old_locus_tag="D0Y75_b00000"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_000532202.1"
                     /translation="MGRDKMIYLEDEKTVLDFHKNLTGGKLVVYLTYDQLNAQNLPLSD
                     SYDLKVKRYNNGVYKVCWYKNLRKKSNTNPYQKFNLEKRLKMSKEELEKLEEEQRRSHI
                     FEVKNLIKDYVLSNHFDMFWTLTFDPKKYDGEVSDELAYDLMRKWLHKMRNTHKRKSDE
                     PFNYIAIPERHKSGQIHWHMLTGYIEPNLIDSGKTFRNQKVYNCMDWKHGFTNVQKMRS
                     KSKVSSYMTKYITKDLLYSPVRKHKRKYWCSKGLALPEVYAGNYSEVADVLPLYDENGQ
                     LNPTHSNDVCDIWLFKV"
                     /name="hypothetical protein"
ORIGIN
        1 agcaagcacc aacagcaata catatagcct aaaggttcca tgtccaaaag gaaattggaa
       61 taaataaaaa agggcgtgcg cagtctgtat tagaccgtac acgctcttaa tgctattata
      121 tagctaaaat aaataaaaaa gagttacagc accctccgac caaagattgt gttgtaacga
      181 gtacttttgt taacttgtat gttactgtat tcggtttgta aaatcaagtt gataaatttg
      241 gaagtgttgt gactcttttt cagtgattgg aaaggagatt ttttattatg ggtcgagata
      301 aaatgattta tttggaagac gaaaaaactg ttttggattt ccacaaaaat ttgacgggag
      361 ggaagttggt cgtctacttg acatacgacc aacttaacgc acaaaattta cccctttctg
      421 actcttatga tttgaaggtt aaacgttata acaacggcgt ttataaagtt tgttggtaca
      481 aaaatttacg caaaaaatct aacactaatc cctaccaaaa atttaacctc gaaaaacgct
      541 taaaaatgtc taaagaagag ctggaaaaat tagaggaaga acaacgaaga agtcatattt
      601 ttgaagtaaa aaatttaatt aaggactatg tattgtctaa tcactttgat atgttttgga
      661 cgttgacgtt tgatccaaaa aaatatgacg gtgaggttag tgatgaatta gcttatgatt
      721 tgatgcgtaa gtggcttcat aaaatgagaa atactcataa gcgtaaaagt gatgagccgt
      781 ttaattatat agcgatacca gagcgtcata aaagtggcca aattcactgg catatgttga
      841 ctggttacat tgagccgaat ttgattgata gtggcaagac gtttagaaat cagaaagtat
      901 ataattgcat ggactggaag catggattta cgaacgttca aaaaatgcgg tcgaaatcaa
      961 aagtgagtag ctatatgact aaatacatca cgaaagattt actatatagt cctgttagaa
     1021 agcataagcg taagtattgg tgtagcaagg gcttagcatt gcccgaggtg tatgcaggca
     1081 attattctga agtagctgat gttttgccgc tatacgatga aaatgggcag ttaaacccga
     1141 cgcatagcaa tgatgtttgt gatatttggt tattcaaagt gtaaacgtat atgtgcttgc
     1201 gaggcgctga cggagtccat gagctagtgg aacgtttagc aagcacatat acgcgcgata
     1261 gcgtttatat ttatatataa atatatattt atatgcctga ctgtttatat ttgcttccta
     1321 agcgttgtat aagctctttg tgttgattgt ttatgccgag aaaacttttg atatggaaaa
     1381 tggctatatg ttattacagc tagctgtaaa tgttggtgag tgattgaatg gggattagac
     1441 ca
//
