LOCUS       NZ_MH785226             2992 bp    DNA     circular CON 21-JUL-2023
DEFINITION  Staphylococcus aureus strain ph1 plasmid pRIVM1295-2, complete
            sequence.
ACCESSION   NZ_MH785226
VERSION     NZ_MH785226.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN09846913
KEYWORDS    RefSeq.
SOURCE      Staphylococcus aureus
  ORGANISM  Staphylococcus aureus
            Bacteria; Bacillota; Bacilli; Bacillales; Staphylococcaceae;
            Staphylococcus.
REFERENCE   1  (bases 1 to 2992)
  AUTHORS   Bukowski,M., Piwowarczyk,R., Madry,A., Zagorski-Przybylo,R.,
            Hydzik,M. and Wladyka,B.
  TITLE     Prevalence of Antibiotic and Heavy Metal Resistance Determinants and
            Virulence-Related Genetic Elements in Plasmids of Staphylococcus
            aureus
  JOURNAL   Front Microbiol 10, 805 (2019)
  REMARK    DOI: 10.3389/fmicb.2019.00805
REFERENCE   2  (bases 1 to 2992)
  AUTHORS   Bukowski,M., Hydzik,M., Sabat,A.J. and Wladyka,B.
  TITLE     Direct Submission
  JOURNAL   Submitted (21-AUG-2018) Faculty of Biochemistry, Biophysics and
            Biotechnology, Department of Analytical Biochemistry, Jagiellonian
            University, Gronostajowa 7, Krakow, malopolskie 30-387, Poland
COMMENT     ##Genome-Annotation-Data-START##
            Annotation Provider          :: NCBI RefSeq
            Annotation Date              :: 07/21/2023 01:07:04
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision :: 6.5
            Features Annotated           :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                :: 2
            CDSs (total)                 :: 2
            Genes (coding)               :: 2
            CDSs (with protein)          :: 2
            Genes (RNA)                  :: 0
            tRNAs                        :: 0
            ncRNAs                       :: 0
            Pseudo Genes (total)         :: 0
            CDSs (without protein)       :: 0
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            MH785226.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..2992
                     /organism="Staphylococcus aureus"
                     /mol_type="genomic DNA"
                     /strain="ph1"
                     /isolation_source="tenosynovitis"
                     /host="Farmed pheasant"
                     /db_xref="taxon:1280"
                     /plasmid="pRIVM1295-2"
                     /geo_loc_name="United Kingdom: Scotland"
     gene            complement(187..1191)
                     /locus_tag="D0Y80_RS00005"
                     /old_locus_tag="D0Y80_o00000"
     CDS             complement(187..1191)
                     /locus_tag="D0Y80_RS00005"
                     /old_locus_tag="D0Y80_o00000"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020368559.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein rep"
                     /protein_id="WP_078099048.1"
                     /translation="MQDNHTKYIDENQDNKTLKDLTKSGKQRPWREKKIDNVSYADILE
                     ILKIKKAFNVKQCGNVLEFKPTDEGYLKLHKTWFCKSKLCPVCNWRRAMKNSYQAQRVI
                     EEVVKEKPKARWLFLTLSTRNAIDGDTLEKSLKHLTESFRRLFKYKKVSKNLIGFMRST
                     EVTVNKNDGSYNQHMHVLLCVESKYFRGSENYISQNDWINLWQKALQVNYRPVANIKAI
                     KPNQKGDKDIQAAIKETSKYSVKSSDFLTDDDERNQEIVNDLEKGLYRKRMLSYGGLLK
                     QKHKILNLDDAEDGNLINTSDEDKTTDEEEKAHSITAIWNFEKQNYYLKDLKR"
                     /name="protein rep"
     gene            complement(1375..2196)
                     /locus_tag="D0Y80_RS00010"
                     /old_locus_tag="D0Y80_o00005"
     CDS             complement(1375..2196)
                     /locus_tag="D0Y80_RS00010"
                     /old_locus_tag="D0Y80_o00005"
                     /inference="COORDINATES: protein motif:HMM:NF025217.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="putative RNA methyltransferase"
                     /protein_id="WP_049948317.1"
                     /translation="MFFKCSICDEKLKRGYKTLACENNHTFDIAKEGYSNLISGHKKSK
                     YDKKLFIARRELNDSSNLYSILISKIIEIIKKYEIKTKNNVIDVGTGEGYILNEISKTF
                     LGENEFLGIDIAKEGVKKAAKSYKNINWLVADLADIPVMNGNVDFLINVLSPSNYDEFK
                     RVLDKEGKLIKIIPNSDYLKEIRNIVFSNHKNKDYDNSEVIDLFEANFNKIEMIDISYK
                     VKLNKEELNKLLDMTPLTWNLSDVEKEGIIKKNLSEITMSFKVLVGGFKTS"
                     /name="putative RNA methyltransferase"
     Typing          complement(188..1191)
                     /name="rep_cluster_1017"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="92.949"
                     /coverage="100.0"
                     /evalue="0.0"
ORIGIN
        1 atttatataa cttaaaaagt taaattgttt atctcatttt ttgtacataa ccagtggcga
       61 atttttcaga cactgcccat ttacatgcaa attaaaattt tcatggtaaa actggtcaac
      121 catgccggtt gaacgctata gttcctgcag gggcaaaaat acataaaaaa aacgctagct
      181 tttaagctaa cgtttcaaat cttttaagta ataattttgt ttttcaaaat tccaaattgc
      241 agtaattgaa tgtgcttttt cttcttcgtc tgttgtttta tcttcgtcac ttgtattaat
      301 taaattgcca tcttcggcat cgtctaaatt taaaatttta tgtttttgtt taagcaatcc
      361 accataactc aacatacgtt ttcggtataa acctttttct aaatcattca cgatttcctg
      421 atttctttcg tcatcatcag ttaaaaaatc agatgattta accgaatatt tcgaggtttc
      481 tttgattgct gcttgaatat ctttatcgcc tttttgattt ggtttgatcg ctttaatatt
      541 tgctactggc cgataattaa cttgtaatgc tttttgccat aaattaatcc aatcattttg
      601 agaaatgtaa ttctcagaac ctctaaaata tttactttca acacacaata aaacatgcat
      661 atgttgatta taactaccgt catttttatt aactgtaacc tctgtcgaac gcataaaacc
      721 aattaaattt ttactaactt ttttatattt aaataatctt ctaaatgatt cagttaaatg
      781 tttaagactt ttttctaaag tatctccatc tatcgcattt cgtgttgata gtgtaagaaa
      841 caaccaacgt gctttcggct tttctttaac cacttcttca atcactcttt gagcttgata
      901 actatttttc atagcacgcc tccaattaca aactggacac aattttgatt tacaaaacca
      961 tgtcttatgt aacttcaaat aaccttcatc agtaggcttg aactctaaga cgttaccaca
     1021 ttgttttacg ttaaaagcct ttttaatttt taagatttct agtatatctg cataacttac
     1081 attatcgatt ttcttttctc tccacgggcg ttgtttccca cttttcgtta agtcttttag
     1141 tgttttatta tcttgatttt catctatata ttttgtatga ttgtcttgca tataaaaaga
     1201 cctccagtat ttgattttag ctcgacactt taatcttatt actggagttt ttttatgtca
     1261 aattttattt tatacactaa aaatctttca aaacactgtt acatcaagct tgaaacaaca
     1321 ttttaaaaaa gaacgttatt tctatatagt atcaagacaa gaagaaactc gttttcaact
     1381 cgttttaaaa ccaccaacca aaaccttaaa actcatcgta atttcactta agtttttctt
     1441 aattattcct tctttttcta cgtcacttaa attccacgtt aaaggcgtca tatcaagtaa
     1501 tttattcaat tcttctttat ttaatttaac cttataacta atgtctatca tttcaatttt
     1561 attaaaatta gcttcaaata aatctataac ctcagaatta tcataatcct tatttttatg
     1621 attactaaag actatattcc ttatttcttt taaataatca ctattaggaa ttatttttat
     1681 caatttcccc tctttatcta gaactctttt aaactcatca taattagaag ggctaagcac
     1741 attaattaaa aagtctacat tcccattcat aactggtata tcagctagat cagcaaccaa
     1801 ccaatttata tttttatatg attttgctgc tttttttaca ccttcttttg caatgtctat
     1861 acctaagaat tcattttcac caagaaatgt tttactaatt tcatttaaaa tataaccctc
     1921 accagtacca acatctatca cattattttt agttttaatc tcatattttt taataatttc
     1981 tatgattttt gaaattaata tcgaatacaa attgctacta tcattcaatt ctcttctagc
     2041 aataaacaat tttttatcgt atttactttt tttatgccct gaaattaaat tcgaataacc
     2101 ctcttttgca atatcaaaag tatggttatt ctcacatgct aaagttttat aacctctctt
     2161 taatttttca tcacatatag aacacttaaa aaacatattc acacctccaa tcaaataatt
     2221 ataaataaca aagttgcttt attccaattg ctttattgac gttgagcctc ggaaccctta
     2281 acaatcccaa aacttgtcga atggtcggct taatagctca cgctatgccg acattcgtct
     2341 gcaagtttag ttaagggttc ttctcaacat caataaattt tctcggcata aatgcgtgtt
     2401 cttttcttgt ctgcccagta gacaaagtag acccaactgt tattgcttta caggtctatt
     2461 tttcgtcgtt ataatctagt taaatcccgt aagggcgcac ttatgcgttc taaaaagaac
     2521 gcgtaaaaaa ccataatcga ccttcgtcaa tttttatctt agttttaagg aatcggcgtt
     2581 gtagcgcaga tataaaaatt aatactgcac gaactagaat cgacgttgta gcgtagatat
     2641 aaaaattaat actacataga aatttaacta agatttaagc tactagtttt ttgctagtag
     2701 cttttttatt ttcttaattt ttaaatgcct ttattttgaa ttttaagggg gtatttagag
     2761 caaactctat atttatatat ttttatacct gtatatttat atatgtttct taaaacgcaa
     2821 atatgagcaa aataagggta catctttctg acatttaact tgtattcaaa agacatatta
     2881 cttaagttgc taaagtcatt ttaaatacaa tcacttgtac tttttaaaca taagccagaa
     2941 aaacgatata acttttatat atatttttct aatttgattg gaactcccta aa
//
