LOCUS       NZ_MH085194             2683 bp    DNA     circular CON 08-MAR-2024
DEFINITION  Providencia alcalifaciens strain BT169 plasmid pBT169, complete
            sequence.
ACCESSION   NZ_MH085194
VERSION     NZ_MH085194.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN14228260
KEYWORDS    RefSeq.
SOURCE      Providencia alcalifaciens
  ORGANISM  Providencia alcalifaciens
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Morganellaceae; Providencia.
REFERENCE   1  (bases 1 to 2683)
  AUTHORS   Kraychete,G.B., Campana,E.H., Picao,R.C. and Bonelli,R.R.
  TITLE     qnrD-containing plasmids in Providencia spp. recovered from
            Brazilian environmental sources
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2683)
  AUTHORS   Kraychete,G.B., Campana,E.H., Picao,R.C. and Bonelli,R.R.
  TITLE     Direct Submission
  JOURNAL   Submitted (16-MAR-2018) Departamento de Microbiologia Medica,
            Universidade Federal do Rio de Janeiro, Av. Carlos Chagas Filho,
            373. CCS, Bloco I, Lab 059, Rio de Janeiro, RJ 21941-902, Brazil
COMMENT     ##Assembly-Data-START##
            Sequencing Technology        :: Sanger dideoxy sequencing
            ##Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider          :: NCBI RefSeq
            Annotation Date              :: 03/08/2024 01:00:14
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision :: 6.6
            Features Annotated           :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                :: 2
            CDSs (total)                 :: 2
            Genes (coding)               :: 2
            CDSs (with protein)          :: 2
            Genes (RNA)                  :: 0
            tRNAs                        :: 0
            ncRNAs                       :: 0
            Pseudo Genes (total)         :: 0
            CDSs (without protein)       :: 0
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            MH085194.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..2683
                     /organism="Providencia alcalifaciens"
                     /mol_type="genomic DNA"
                     /strain="BT169"
                     /isolation_source="coastal water"
                     /db_xref="taxon:126385"
                     /plasmid="pBT169"
                     /geo_loc_name="Brazil"
                     /collection_date="2017-06-20"
     gene            join(2363..2683,1..120)
                     /locus_tag="HUF39_RS00005"
     CDS             join(2363..2683,1..120)
                     /locus_tag="HUF39_RS00005"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_015063446.1"
                     /translation="MSQLFRLASPEDYEYIEELNLWELSFDKRPVQGVRCEDPVIGAEK
                     YNQGREKFKALASRHKKHWKPNGLTFSELIRWAIECGTPEQCQLVLALYHCTNDDDYQA
                     MGIQLSRSIDNANVSPIIFFTGKNQRLLGDISMLKQLEEKVR"
                     /name="hypothetical protein"
     gene            1081..1725
                     /locus_tag="HUF39_RS00010"
     CDS             1081..1725
                     /locus_tag="HUF39_RS00010"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_032495680.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="quinolone resistance pentapeptide repeat protein
                     QnrD1"
                     /protein_id="WP_012634451.1"
                     /translation="MEKHFINEKFSRDQFTGNRVKNIAFSNCDFSGVDLTDTEFVDCSF
                     YDRNSLEGCDFNRAKLKNASFKSCDLSMSNFKNISALGLEISECLAQGADFRGANFMNM
                     ITTRSWFCSAYITKTNLSYANFSRVILEKCELWENRWNGTVITGAVFRGSDLSCGEFSS
                     FDWSLADFTGCDLTGGALGELDARRINLDGVKLDGEQALQLVESLGVIVHR"
                     /name="quinolone resistance pentapeptide repeat protein
                     QnrD1"
     ARG             1082..1722
                     /name="qnrD1"
                     /gene="qnrD1"
                     /gene_name="quinolone resistance pentapeptide repeat
                     protein QnrD1"
                     /tool="amrfinderplus"
                     /drug_class="QUINOLONE"
                     /identity="100.0"
                     /coverage="100.0"
     Typing          832..987
                     /name="Col3M"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="97.452"
                     /coverage="100.0"
                     /evalue="1.07e-69"
ORIGIN
        1 cagttaagcc gaagtattga taatgcaaat gtcagtccga tcatcttttt cacaggtaaa
       61 aatcaacggt tattaggtga tatttcgatg ctaaaacagc tcgaagaaaa ggtgcgctga
      121 cgttaggttt acctattatt ttatgtatta tcctatctat tattctatct cttattttat
      181 ctatttcgtc tgtaataggt agaataatac atagaataag atacagaata atagatagac
      241 acaagatgac gttgtgttat ttcttaccca ttaatccacc tgttattcta cctattactt
      301 tacccgttat tgcacccaat ttaggtataa cgggcagaat aacgggtgaa ataatgggta
      361 gaatcatagt tttactaact tgcaccccat gatactttca gtatcaatgc cactcatttt
      421 ctggacgaaa atgaatgaca taaggctccg ccctctggct attttcttcg gctggacgcc
      481 tgcgaaaaaa accattcacc caagcccgtc aaactcactg cgttcgtctg accaccccct
      541 tttttcgccc ctgtatttgg tcgctcaaaa atgtggtggt cagacgcttc gcttgacggg
      601 gggctttgcc cccaaaacga aacacgttca ctggggttca cttgccatcg ctggggcgtg
      661 tcatttcgtt tcggctcccc ctgtttttcc ctttcttcgc tggacgctca tcaggataaa
      721 aacaaaaagc ctaccgccct cgttttactc ggttggtcaa atcgcttctt gccacaaaac
      781 aagtttgtga ctttcagcga tttcgcatcg ttttacttgt cagtttgcac gatgttaaaa
      841 acgcactcag aagcccgcaa aaccgttcta aactttcagc gtagatttgg gtgttttata
      901 gggtgatcgt gtcttaagat cgtttcgagg ggctttaatg gggatgaacg ggaggttttt
      961 gctaactaac tcgcccgttt aacataaaag ggattgtatg aatcaatttt agctagagtt
     1021 taaggttgtt caaattaatg tacaatgatt gcactgtata aataaccagg tgtagcatgt
     1081 atggaaaagc actttatcaa tgaaaagttt tcacgagatc aatttacggg gaatagagtt
     1141 aaaaatattg ccttttcaaa ttgtgatttt tcaggggttg atttaactga tactgaattt
     1201 gttgattgta gtttttacga caggaatagc ttggaagggt gtgattttaa tagagccaaa
     1261 ctaaaaaacg ctagctttaa aagctgcgat ttatcaatga gtaattttaa aaacattagc
     1321 gccttaggtc ttgaaattag tgagtgttta gctcaaggag ctgattttcg aggggctaat
     1381 tttatgaata tgataactac aaggtcatgg ttttgtagtg cttatataac caagacaaat
     1441 cttagttacg ctaatttttc tagagtcata ttagaaaagt gcgaactgtg ggaaaatcgc
     1501 tggaatggca ctgtgataac tggcgccgtg tttcgtggct ccgatctttc ttgtggggag
     1561 ttttcatcgt ttgattggtc tttggctgat tttactggtt gtgatttaac gggtggggcg
     1621 cttggcgagc ttgatgcaag gcgaattaat ttagatggag tgaagttgga tggagagcag
     1681 gcgcttcagc ttgttgagag tttaggtgtt attgttcacc gataaaatct aggtaaaaaa
     1741 cgcctaatgc cccaatgtgg tactaatcaa aacggagcga agcgacatct tcatcttgtc
     1801 tttgcttttc tccatgatca gttattgggt catggtctct tagctcgtta atctggctaa
     1861 gtttggttag gttgggcttc tttcgacact tcgcaatcca agaaatccct agtccgttga
     1921 ttggtgctct tatcaggtac gcactgtaat ctttcgatac cgcagcgtga ttcggaggta
     1981 gagccggaat ttcgttttcc ggtacgtttt actaccacaa tttgcctgtt tatcctttcg
     2041 gagaccgggc taagtccgag tcaatcaagt ggtgcatttg ggttaatgtc gttggctggt
     2101 atttaatgag aacgtgacaa gcgcctctca cgttgctaag attggattgc gacgtctaat
     2161 ctgagcaacg aatgcacaag atttagagta ccagagccct gtgatgctgt cacggggctt
     2221 tgttacatct ggagcttggt aaacctcata aattcaattc gcaacgctcg ccgcaaggcg
     2281 tgaacttgtt tcacgtcgag gaagcggaat ttctcgaaag ccttatactg tctccgttca
     2341 cacatgatcg gagggtgtct ctatgtctca attatttcgt ttggcatcgc cagaagatta
     2401 cgaatacatc gaagaattaa atttatggga attgtcattt gataagcgac cggttcaagg
     2461 ggttcgttgt gaagatccgg tgatcggggc agaaaaatat aatcaagggc gtgaaaaatt
     2521 taaggcgtta gcgtcacggc ataaaaaaca ctggaaaccg aacggattga ccttttcgga
     2581 gttgatccgc tgggcaatag aatgcggaac tccagaacaa tgtcagcttg ttttagcgtt
     2641 ataccattgc acaaacgatg atgattatca ggcgatggga att
//
