LOCUS       NZ_MG948564             6760 bp    DNA     circular CON 30-JAN-2024
DEFINITION  Salmonella enterica subsp. enterica serovar Enteritidis strain
            S17861 plasmid p4.4, complete sequence.
ACCESSION   NZ_MG948564
VERSION     NZ_MG948564.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN14228299
KEYWORDS    RefSeq.
SOURCE      Salmonella enterica subsp. enterica serovar Enteritidis (Salmonella
            enteritidis)
  ORGANISM  Salmonella enterica subsp. enterica serovar Enteritidis
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 6760)
  AUTHORS   Rakov,A.V. and Shubin,F.N.
  TITLE     p4.4 plasmid is a marker of Salmonella Enteritidis plasmid type in
            Russia
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 6760)
  AUTHORS   Rakov,A.V. and Shubin,F.N.
  TITLE     Direct Submission
  JOURNAL   Submitted (13-FEB-2018) Molecular Epidemiology and Microbiology,
            G.P. Somov Scientific Research Institute of Epidemiology and
            Microbiology, 1 Selskya Street, Vladivostok, Primorye 690087, Russia
COMMENT     ##Assembly-Data-START##
            Assembly Method              :: Vector NTI v. v. 11.5.0
            Sequencing Technology        :: Sanger dideoxy sequencing
            ##Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider          :: NCBI RefSeq
            Annotation Date              :: 01/30/2024 05:23:36
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision :: 6.6
            Features Annotated           :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                :: 4
            CDSs (total)                 :: 4
            Genes (coding)               :: 4
            CDSs (with protein)          :: 4
            Genes (RNA)                  :: 0
            tRNAs                        :: 0
            ncRNAs                       :: 0
            Pseudo Genes (total)         :: 0
            CDSs (without protein)       :: 0
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            MG948564.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..6760
                     /organism="Salmonella enterica subsp. enterica serovar
                     Enteritidis"
                     /mol_type="genomic DNA"
                     /strain="S17861"
                     /serovar="Enteritidis"
                     /isolation_source="chicken"
                     /sub_species="enterica"
                     /db_xref="taxon:149539"
                     /plasmid="p4.4"
                     /geo_loc_name="Russia"
                     /collection_date="2012-04-10"
                     /serogroup="D1"
     gene            1..1866
                     /locus_tag="HTR16_RS00005"
     CDS             1..1866
                     /locus_tag="HTR16_RS00005"
                     /EC_number="2.1.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006816428.1"
                     /GO_function="GO:0003677 - DNA binding [Evidence IEA];
                     GO:0008168 - methyltransferase activity [Evidence IEA];
                     GO:1904047 - S-adenosyl-L-methionine binding [Evidence
                     IEA]"
                     /GO_process="GO:0006306 - DNA methylation [Evidence IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="site-specific DNA-methyltransferase"
                     /protein_id="WP_021558993.1"
                     /translation="MQTELIKELNKVLKAFPQFWNGEELQRSMVSDAISQKQPDLIKAL
                     VDNEKVRSVYGVDIDGIFIFDFDKLCGLLKYKEYWANSFTKYRNKVGLTSEGKYLDYSS
                     DVVLDFPFKDCILEGGMTKENQGKDEIYYNEIIAMDEVDSLLSPKAFTNAKRYTKEGVK
                     ENITKFNDDENLIIKGNNLIALHSIKKLYAGKVKLIYIDPPYNTGSDSFKYNDRFNRST
                     WLTFMKNRLEVAKEMLSDDGFIFIQCDDNESAYLKVLCDSIFGEENYRNSIYWHRTYAG
                     KTVKSKLPWNTDTILFYSKKESSLLEPYTAELSAADIKSYNKDDFDGRGKYNTVSLQKT
                     SSPGPQTTYDYIDNTGKKWSCPEKGWRMTKEKLKALENDNRLYITDKTIREKYYLKERK
                     EIGKQIDNFWHDIGNLNRVSDVAFIDGQKTEKLMQRIISLASKENDIVLDFHLGSGTSA
                     AAAHKMGRRYIGIEQMDYINEITVPRLQKVIEGEQGGISKDVNWQGSGSFVYVELVELN
                     AYFIHEIQKAQSTEELEKLFAVMKTEAYLNYQVALENVLSAEYEVDGILHKVAFSELEL
                     HEQKQLLIEILDKNQLYVNVSDMEDSDLNISESDKAFTRSFYGME"
                     /name="site-specific DNA-methyltransferase"
     gene            1871..4507
                     /locus_tag="HTR16_RS00010"
     CDS             1871..4507
                     /locus_tag="HTR16_RS00010"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012443154.1"
                     /GO_function="GO:0005524 - ATP binding [Evidence IEA];
                     GO:0003677 - DNA binding [Evidence IEA]; GO:0016787 -
                     hydrolase activity [Evidence IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DEAD/DEAH box helicase family protein"
                     /protein_id="WP_052512605.1"
                     /translation="MAKKPKSAGREKLLFNKLKQFDEPGLFHDNYQTPDYIQANLKDIL
                     RPYQHSALRYLHYTQRKRDDALLHYRHLLFHMATGAGKTMVMAGTILYLFKEFGYQNFI
                     FFVHTDAIIQKTRENLLNPQSPKYLFSHELEIDGEKITIAPVDIFPSVPERNTIYLKLS
                     TIHKMHDELNSYRENSITYEDLKEIPLVLLGDEAHHFNAGTKARGKSKTSPENEEQTWE
                     RTIENILDLRPDNRLFEFTATIDLANKDIGQKYRDKVVYQYDLKQFMSDGYSKKVMLLE
                     ANQNDSDKMLDAVLLSQYRKLTAADHGITGFKPVILFKSNKIAISKAKQEEFSQLIAAM
                     TPESIRRHLANKKLQLSSDTSIWHKVIQRYADSDLVTVTGQIQEDFNDFNLLNVNKSDL
                     LEENPVLLNTLEEVDNPVRAVFAVAKVNEGWDVLNLYDIVRISEQASSSKTSTDSEAQL
                     IGRGARYYPFIYDGQRSFTRRFDNSTKDLSVLEQLHYHTINEPAYIKTLHASLEQADID
                     VHQDGGGTVEHARLKEDFKKSAVYQAGKLYFNEVEEIERSSRNWETYSLETRFEIQYQI
                     ACEESLDNLTGTKGGIIKPEPLVLDERFYRKAMQRISFYALDNLKRFFPKLTGIREFIR
                     SDAYLGKLKITVSVPQSLDFTTVPAKDKLHLLENVLLRISENVRRNDQKVKGTYRFISQ
                     PVKEVIKDYSLHIDPSVAINQKITAAPTIGKKWYVYDNAILNQLEHRLIKMLEAFMPKL
                     KARYDDIYVLRNDEQSTRFKLTEFGGVRGFMPDFIMILTRHSDNTYWQVFLEPKGDDRL
                     LDDAWKERMLETLNDRERIVIDENEHVRLVGIKFFANSQMDVFVSDMQNKLNDGESLET
                     SSLSLPL"
                     /name="DEAD/DEAH box helicase family protein"
     gene            complement(4909..5022)
                     /locus_tag="HTR16_RS00020"
     CDS             complement(4909..5022)
                     /locus_tag="HTR16_RS00020"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005761324.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="replication initiation protein"
                     /protein_id="WP_071588254.1"
                     /translation="MHEPPVQPDRCALSGNYRLESNPVRHDLSPLAAATGN"
                     /name="replication initiation protein"
     gene            complement(5687..5881)
                     /locus_tag="HTR16_RS00015"
     CDS             complement(5687..5881)
                     /locus_tag="HTR16_RS00015"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001041627.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Rop family plasmid primer RNA-binding protein"
                     /protein_id="WP_001041631.1"
                     /translation="MNKQQQTALNMARFIKSQSLTLLEKLDALDADEQAAMCERLHELA
                     EELQNSIQIRFEAESETGT"
                     /name="Rop family plasmid primer RNA-binding protein"
     Typing          5522..5607
                     /name="MOBP"
                     /typing="oriT"
                     /tool="MOB-suite"
                     /identity="100.0"
                     /coverage="100.0"
                     /evalue="8.58e-38"
     Typing          5918..6016
                     /name="MOB_unknown"
                     /typing="oriT"
                     /tool="MOB-suite"
                     /identity="98.0"
                     /coverage="100.0"
                     /evalue="1.35e-41"
     Typing          6141..6396
                     /name="MOBF"
                     /typing="oriT"
                     /tool="MOB-suite"
                     /identity="92.248"
                     /coverage="89.0"
                     /evalue="2.69e-98"
     Typing          complement(4951..5504)
                     /name="rep_cluster_2350"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="94.075"
                     /coverage="99.0"
                     /evalue="0.0"
ORIGIN
        1 atgcagaccg aattaataaa agaacttaac aaggttttaa aagcgttccc gcaattctgg
       61 aatggagagg aattacaacg ttcaatggtg agtgacgcta tcagtcaaaa gcagccagat
      121 cttatcaagg cattagtcga taatgaaaaa gtccgctctg tttatggtgt ggatattgat
      181 ggcattttta tctttgattt tgacaaatta tgtggtcttc taaaatacaa agaatattgg
      241 gctaatagct ttactaaata ccggaacaaa gtgggattaa ctagcgaagg taaatacctt
      301 gattacagtt ctgatgtggt gctggatttt cctttcaagg attgtattct tgaaggtgga
      361 atgaccaaag aaaatcaggg aaaagatgag atttattata atgaaatcat agcaatggat
      421 gaagttgact ctttgctttc tcccaaggcg ttcactaatg ctaagcgata taccaaagag
      481 ggggtaaaag aaaatatcac taaatttaac gatgatgaaa atttaataat taagggaaac
      541 aatctcattg cactacattc aataaaaaaa ctttacgcag gaaaagtaaa gttaatttat
      601 atagacccgc cttacaatac agggagtgat agctttaagt ataatgatcg attcaatcgc
      661 tcaacatggt tgacattcat gaaaaatagg cttgaggtgg ctaaagaaat gctttccgat
      721 gatggcttta tttttattca atgcgatgat aatgaatcag catatcttaa agttttatgt
      781 gattcaattt ttggagaaga gaattataga aactcaatct attggcatag aacctacgca
      841 gggaaaactg taaaaagtaa gttgccatgg aatacagata caatattgtt ttattctaaa
      901 aaagaaagtt cattattaga gccatataca gcagaactta gtgctgctga cattaaatcc
      961 tataacaagg atgattttga tggaaggggt aaatacaaca ctgttagctt gcaaaaaaca
     1021 agctctccag ggccgcaaac aacttatgat tatatagata atacaggtaa gaaatggagt
     1081 tgccctgaaa aagggtggag aatgacaaag gaaaagttaa aggctttgga aaacgacaat
     1141 aggctatata tcactgacaa aacaatacga gaaaaatatt atcttaaaga aagaaaagag
     1201 atcgggaaac aaatagataa tttttggcat gacattggga atttaaatag ggtttccgat
     1261 gttgctttta ttgatggaca aaaaactgaa aaattaatgc aacggataat tagccttgct
     1321 tccaaagaaa atgatatcgt cttggacttt catctcggca gcggaactag cgcagcagca
     1381 gcccataaaa tgggacgtcg ctatatcggt attgagcaga tggattacat caatgagatc
     1441 accgtgccac gtttgcaaaa agtcattgag ggtgagcagg gaggtatctc aaaagacgtc
     1501 aactggcagg ggagcggcag ctttgtctac gttgaactag tggaactgaa cgcttacttc
     1561 atacatgaaa tccagaaagc gcagtccacg gaagaactcg aaaaactctt tgccgtgatg
     1621 aagacagagg catatctcaa ctatcaggtg gctctggaaa atgtgctgtc cgctgagtac
     1681 gaagtggatg ggatcctcca taaggtagca ttcagtgaac tggaactgca tgagcagaag
     1741 cagcttttga ttgaaatcct agataagaac cagctctacg tgaatgtctc tgatatggag
     1801 gacagcgacc tgaacatttc agagagtgat aaagccttta cccgcagctt ctacggaatg
     1861 gagtgacggc atggcgaaga aaccgaagtc agcaggtaga gagaagctgc tgtttaacaa
     1921 gctgaagcag ttcgatgaac caggactgtt ccacgataac tatcagacgc cggactatat
     1981 tcaggcaaac ctgaaagata tcctgcgtcc ctatcagcac agcgcactgc gttacctgca
     2041 ttacacgcaa cgtaaacgtg atgacgcgct tctgcattac cgtcacctgc tgtttcacat
     2101 ggcaaccggt gcagggaaaa cgatggttat ggcaggaacg atactctatc tatttaaaga
     2161 gttcgggtat cagaacttca tctttttcgt acataccgac gcgattatcc agaaaacgcg
     2221 agagaaccta cttaacccgc aatcgccgaa gtacctgttc agtcatgagc tggaaatcga
     2281 cggggaaaaa atcaccatcg caccggtaga tatattcccg tccgtaccgg aacgcaacac
     2341 gatttacctc aagctctcga ctatccataa gatgcacgat gagctgaaca gctatcgaga
     2401 gaacagcatt acctacgagg atttaaaaga aatcccgctt gtgctactcg gtgacgaggc
     2461 gcatcacttc aacgccggca ccaaagctag aggcaagtcg aaaacctcac cggagaacga
     2521 ggagcagact tgggagcgta cgattgagaa catcctcgac ctgcgaccgg ataaccgcct
     2581 gttcgagttc accgctacca ttgaccttgc aaacaaagat atcggacaga aataccgtga
     2641 caaggtggta tatcagtatg atctgaagca gttcatgtca gacggttact cgaaaaaggt
     2701 catgctgttg gaagcaaacc agaacgacag cgacaagatg ctcgatgcgg tactgttaag
     2761 ccagtaccgt aaactgacgg cagcagatca cggcatcacc ggctttaaac cggtcattct
     2821 gttcaagtcg aataagattg cgatatcaaa ggcgaagcag gaggagtttt cgcaactgat
     2881 tgccgccatg acacctgaga gcatcagacg tcatctggct aacaaaaaac tccagctcag
     2941 ctctgacacc agtatctggc ataaagtgat tcagcgttac gctgacagtg atttagtgac
     3001 ggtgactgga caaattcagg aggactttaa cgactttaac ctgctgaacg tcaacaagtc
     3061 agacctgctg gaggaaaacc ccgtcctgct gaatacactg gaagaagtcg ataatccagt
     3121 gagagccgtc tttgctgtcg cgaaggtgaa tgaaggctgg gacgtactta acctctacga
     3181 tattgttcgc ataagcgagc aggcgagcag cagcaaaacc agcacggaca gcgaagcgca
     3241 gcttattggg cgaggtgcgc gttactaccc gttcatttat gacggtcaac gtagcttcac
     3301 ccgccgtttt gataacagta cgaaggattt gagcgtactg gagcaactgc actatcacac
     3361 catcaatgaa ccggcgtaca tcaaaacact gcacgcctct ctggagcagg cggacattga
     3421 cgtgcatcag gatggcggag gtacggttga acacgccaga ttgaaagaag actttaaaaa
     3481 gtccgccgtg tatcaggcgg gtaagctgta ctttaacgaa gtggaagaga ttgagagaag
     3541 cagccgaaac tgggaaacct actcgctgga aacacgcttt gaaatacagt atcagatcgc
     3601 ttgcgaggag tcgctggaca acctgacagg cacaaagggg gggatcataa aaccggaacc
     3661 actggtactg gacgagcgtt tttaccgcaa ggcgatgcaa agaatcagct tttacgcgct
     3721 agataacctg aaacgcttct tcccgaaact gacaggtatt cgggagttca tacgcagtga
     3781 cgcctatctt ggtaagctga aaatcaccgt cagcgtaccg cagtcactgg atttcaccac
     3841 cgtaccggca aaagataagc tgcacctact ggaaaacgtt ttgctgcgta tctcagagaa
     3901 tgtgcgtcgc aatgaccaga aggtaaaagg cacgtaccga tttatcagcc agccggtgaa
     3961 agaggtgatt aaagattaca gtttgcatat tgacccgtcg gtagccatta accagaaaat
     4021 caccgccgct cccaccattg gtaaaaaatg gtacgtgtac gataatgcga tactaaatca
     4081 gcttgagcat cgtctgataa aaatgctgga agcattcatg ccgaagctaa aagcgcgtta
     4141 tgacgatatt tacgtactgc gtaacgacga gcagtcaacg cgctttaagc tcacggagtt
     4201 cggcggcgtg cgtgggttta tgccagattt catcatgata ctgacgcgcc attcagacaa
     4261 cacttactgg caggtgttcc ttgaaccgaa gggggatgac cgtctgctgg atgacgcatg
     4321 gaaagaacgg atgctcgaaa cactgaatga cagggagcgc attgtaattg atgaaaatga
     4381 gcacgtcaga ctggttggga ttaaattctt tgccaatagc cagatggacg tttttgtcag
     4441 cgacatgcag aacaagctga atgatggaga atcgctcgaa acctcctcgc tctccctacc
     4501 actgtaagtc acgacaataa aataacggag cattacgctc cgttatttta ttgttatctc
     4561 gaactacctc ccagggaggt gatgattgct cctgtaatgg ttgcattgtt tgttcttgct
     4621 gttgcgaatc attagttttg aatggtggtt aaaaaccgtt cgctatgttt atgcctgggg
     4681 gggggatgag ggggaaaaga ttcaaggatc ctcttgtgat cctttttttc tgcgcgtaat
     4741 ctgcagcctg taaacgaaaa aaccaccctg gcaggtggtt tttcgaaggt tagctaatcc
     4801 tggcagatta tctaaccggg taactggctt ggaggagcgc agtcaccaaa atctgttctt
     4861 tcagtttagc cttaacaggt gcataacttc aagacaaact cctctaaatc agttaccagt
     4921 ggctgctgcc agtggcgata agtcgtgtct taccgggttg gactcaagac gatagttacc
     4981 ggataaggcg cagcggtcgg gctgaacggg gggttcgtgc acacagccca gcttggagcg
     5041 aacgacctac accgaaccga gataccaaca gcgtgagcta tgagaaagcg ccacgcttcc
     5101 cgaagggaga aaggcggaca ggtatccggt aagcggcagg gtcggaacag gagagcgcac
     5161 gagggagctt ccagggggaa acgcctggta tctttatagt cctgtcgggt ttcgccgact
     5221 ctgacttgag cgtcgatttt tgtgatgctc gtcagggggg cggagcctat ggaaaaacgc
     5281 cagcggcgcg gcctttttcc ggttcctgct cttttgctca catgttcttt ccggccttat
     5341 cccctgattc ggtggataat ctaattactg tctttgcgtg agttgatacc gctcgccgca
     5401 gccgaacgac cgagcgtagc gagtcagtga gcgaggaagc ggaagagcgt cggaagttgc
     5461 attttctcct tacgcatctg tgcggcattt cacatcggtt atggtgtact tttcatacaa
     5521 tctgcactga tgccgcatag ttaagccagt atacactccg ctatcgctac gtgactgggt
     5581 catggctgcg ccccgacacc cgctaaaacc ccctgacgcg ccctgacggg cttgtctgct
     5641 gacgaaaacg cccacgggaa agccgtgacc gcctccgtca gcttcgttat gttcctgttt
     5701 cactttcggc ctcaaagcga atctggatgc tgttctggag ttcttctgcg agttcgtgca
     5761 gtcgttcgca catggccgcc tgttcgtcgg catccagagc atccagtttt tcaagcagtg
     5821 tcaggctctg gcttttgata aatcgcgcca tattcagcgc agtttgttgt tgtttgttca
     5881 ccttccgttg ttctccgtca gttccgggtg tcggggggac cctgagcagg tggtaattgt
     5941 aagacgttgc gggcgacggt attacaattg cacatcctgt cctgtttctt taggacgtat
     6001 catggcacag catatcaact gataaataat ccctgtgcag tgcagccgct gttgcataaa
     6061 atttcgctct gcgtcgagtg tttcttaatc aataattccg ctgatactcc ggaaaaacgc
     6121 gagtctgttc tcatgcctga aatgcccaca ccccacgcaa aaacaagttt ttgctgattt
     6181 ttctttataa atagagagtt atgacaaatt agttcttctt gctctctttg tgatatttaa
     6241 aaaagcggtg ttggcgcagc tacaacaccg cgccgacacc gctttttagg ggtggtactg
     6301 actattttca taaaaaacat catcttatat taggggtgct gctagcggcg cggtgtgttt
     6361 ttttacagga cgcccctggg ggcgctgcta ggggtgtctg ttcagatatg tagcaatgag
     6421 tcagggattc acgaactgaa aatgtccgaa aatgtgtctc atgggtactg tatgcgccca
     6481 aaccgatcgt cattcacttt catgcatagc tatgcagtga gctgaaagtg atcctgacgc
     6541 atttttccgg tttaccccgg ggaaaacatc tctttttgcg gtgtttgcgg cagaatcgcg
     6601 ttcagcgcgt tttagcggtg cgcgcaagag cgtttatgtt aaatactact cgttctggtg
     6661 cattttcccg caactgaatc caactcatcg ctgttgggtt ccagcgccga acgctatacc
     6721 ttacaatcat tccaatattt aacagtcata aggccatgac
//
