LOCUS       NZ_LT795116             4239 bp    DNA     linear   CON 12-DEC-2023
DEFINITION  Salmonella enterica subsp. enterica serovar Typhimurium isolate
            VNB151-sc-2315230 plasmid p2.
ACCESSION   NZ_LT795116
VERSION     NZ_LT795116.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA3448233
            Assembly: GCF_900166885.1
KEYWORDS    RefSeq.
SOURCE      Salmonella enterica subsp. enterica serovar Typhimurium (Salmonella
            typhimurium)
  ORGANISM  Salmonella enterica subsp. enterica serovar Typhimurium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1
  CONSRTM   Pathogen Informatics
  TITLE     Direct Submission
  JOURNAL   Submitted (15-FEB-2017) WTSI, Pathogen Informatics, Wellcome Trust
            Sanger Institute, CB10 1SA, United Kingdom
COMMENT     ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 12/12/2023 05:03:12
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,152
            CDSs (total)                      :: 5,026
            Genes (coding)                    :: 4,906
            CDSs (with protein)               :: 4,906
            Genes (RNA)                       :: 126
            rRNAs                             :: 8, 7, 7 (5S, 16S, 23S)
            complete rRNAs                    :: 8, 7, 7 (5S, 16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 15
            Pseudo Genes (total)              :: 120
            CDSs (without protein)            :: 120
            Pseudo Genes (ambiguous residues) :: 0 of 120
            Pseudo Genes (frameshifted)       :: 37 of 120
            Pseudo Genes (incomplete)         :: 94 of 120
            Pseudo Genes (internal stop)      :: 18 of 120
            Pseudo Genes (multiple problems)  :: 27 of 120
            Pseudo Genes (short protein)      :: 1 of 120
            CRISPR Arrays                     :: 3
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            LT795116.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
FEATURES             Location/Qualifiers
     source          1..4239
                     /organism="Salmonella enterica subsp. enterica serovar
                     Typhimurium"
                     /mol_type="genomic DNA"
                     /serovar="Typhimurium"
                     /isolate="VNB151-sc-2315230"
                     /sub_species="enterica"
                     /db_xref="taxon:90371"
                     /plasmid="p2"
     gene            complement(<1..418)
                     /locus_tag="CS949_RS27150"
     CDS             complement(<1..418)
                     /locus_tag="CS949_RS27150"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001029330.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MobA/MobL family protein"
                     /protein_id="WP_172951892.1"
                     /translation="MAIYHLSMKIISRSSGYSAVASAAYRSGSLMLDERTGLTHDYTRK
                     SGVAEAVILTPATAPAWCTNRAELWNAVEKAERRKNSQLAREIELAIPRELPQDAARET
                     VLAFVRENFVSQGMIADVAFHHMDKTNPHAHIMLT"
                     /name="MobA/MobL family protein"
     gene            597..851
                     /gene="mobC"
                     /locus_tag="CS949_RS27155"
     CDS             597..851
                     /gene="mobC"
                     /locus_tag="CS949_RS27155"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000091747.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="relaxase accessory protein MobC"
                     /protein_id="WP_000091747.1"
                     /translation="MSRTLEQKIADAEARLQRLKAKSRSLDTAQKVVVGAALLAKVRKP
                     EEVQLRAWLLQFLKAEVTRQADVTRILPLINELEALPGQ"
                     /name="mobC"
     gene            1383..2075
                     /locus_tag="CS949_RS27165"
     CDS             1383..2075
                     /locus_tag="CS949_RS27165"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001281399.1"
                     /GO_function="GO:0003887 - DNA-directed DNA polymerase
                     activity [Evidence IEA]"
                     /GO_process="GO:0006270 - DNA replication initiation
                     [Evidence IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="replication initiation protein"
                     /protein_id="WP_001281403.1"
                     /translation="MSDLIAYKSNALVEASYKLTLQEQRFLLLCISRLKSGADAELQKT
                     MTITAAEYFDSFPDMGRKNAEVQLQEAIDRLWDRSIILKNDEKREEFRWIQYRAQYAKG
                     EAKARITFSDAVMPYLTQLKGQFTRVVIKNISGLSSSYSIRIYEFLQQFRSTGERIIAL
                     NDFRSMLGIENKYKQFRDLNKILIKPCVDELNKKSDLAVTVETIKKGRTVVALHFRFKE
                     DKQIKMTI"
                     /name="replication initiation protein"
     gene            complement(2333..>4239)
                     /locus_tag="CS949_RS27170"
     CDS             complement(2333..>4239)
                     /locus_tag="CS949_RS27170"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016240513.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="MobA/MobL family protein"
                     /protein_id="WP_099267079.1"
                     /translation="REIELAIPRELPQDAARETVLAFVRENFVSQGMIADVAFHHMDKT
                     NPHAHIMLTTRAVGPAGFGGKVRDWNDRTHAETWRASWADHANRALANAGYQEEIDHRS
                     YERQGLEKTPGIHLGKSACAMETRGIETERGEQNRLINRLNLEIQISRTELRNSGLTEP
                     ARRVADLLNIVLPDNATSYTLRDIIEALPKDSNAAWKLTSNAMSMMADMQATRRRWEEL
                     NTERKEAMSHAASLKKSSPFSSGFSRIPLMQWAAPEYRSEQGKIQSLSQQMEKLRQHYR
                     KVEKQDIPASQTAFEKQWQQWGASGLAALRVQLLKREEELRRKEQEDTERSRTERRAEQ
                     LRKNDNAVMDSGVLSAVVTGYGEAPMPGNGEMTCYLLLHNRNGEYTLWGNELEKYRTRI
                     FERVDLMRDRSGYICDRSEIGQHPPLQRVYSSATFEQLLTQVCQTWPQYTRNLRQPKTW
                     PESFCLGEDRQPAMPSLAARKVDFTQGRLPPTLMPVMSSVDRETRQLQLLLVMGVDDSL
                     GGVVRLNGTLYPAFAVPSADNSQLVISALTDKGLRYAGYGVAVNHDADSHISPAPELME
                     FHLKTREVPLFAAVNTPEKQPDHLFRSLGFNRTWDEWRREEDARTHTTERRHDRGWSQ"
                     /name="MobA/MobL family protein"
     Typing          complement(61..419)
                     /name="MOBQ"
                     /typing="oriT"
                     /tool="MOB-suite"
                     /identity="98.333"
                     /coverage="100.0"
                     /evalue="8.460000000000002e-179"
     Typing          420..596
                     /name="MOBQ"
                     /typing="oriT"
                     /tool="MOB-suite"
                     /identity="100.0"
                     /coverage="100.0"
                     /evalue="5.61e-88"
     Typing          complement(4135..4239)
                     /name="MOBQ"
                     /typing="oriT"
                     /tool="MOB-suite"
                     /identity="97.17"
                     /coverage="100.0"
                     /evalue="1.33e-42"
     Typing          1384..2075
                     /name="rep_cluster_1778"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="95.965"
                     /coverage="100.0"
                     /evalue="0.0"
     Typing          complement(2337..4237)
                     /name="MOBQ"
                     /typing="relaxase"
                     /tool="MOB-suite"
                     /identity="99.369"
                     /coverage="100.0"
                     /evalue="0.0"
ORIGIN
        1 tggtcagcat gatgtgcgca tggggatttg ttttatccat gtgatggaac gccacatcag
       61 caatcatgcc ctgactgaca aagttttctc tgacaaaggc gagaacggtt tcccgtgcgg
      121 catcctgcgg cagttcacgg gggatagcga gttcaatttc ccgcgcaagt tgtgagttct
      181 tccggcgttc ggccttctca acggcattcc agagttcggc acggttcgta caccaggcag
      241 gggctgtcgc gggggtcaga atcacagctt cagccacacc gcttttgcgg gtgtagtcgt
      301 gagtcagtcc ggtacgctca tcaagcatca gtgaaccgga acgataggca gcggaagcta
      361 cggcgctgta gccgctgctt ctggagataa ttttcatgct gagatgataa atcgccattt
      421 ctgccgtaat gcctttttgt agttttcttt cagccccgca gggcgcacac aatcgaaacg
      481 gagtggagat tgtataagtg cgcacttcgt gatttgccgt gcattatgcc agctcagttt
      541 ttaaactacc agtgacgcgc taaaatgcga tttttcatcg cgcacggagt tacatcatga
      601 gcagaacgct cgaacagaag attgctgatg ctgaggcgag attacagcgc ctgaaggcga
      661 agagccggag cttggacaca gcgcagaagg ttgttgtggg tgcagcattg ctggcaaagg
      721 tcagaaagcc ggaggaggtg cagttgcgtg cctggttact ccagttcctg aaggcagagg
      781 tgacacgaca ggctgatgtg acgcgcatac tgccgctgat taacgagctg gaggcgctgc
      841 caggacagtg attgtatcgt ccgctcgccg cagccccagc gaccgagcgt tagcgagcga
      901 gtgggcgagg aagcggaagt gaatccgtcg ccaggttgag cacatacgca cggtttttcg
      961 gcaggtgata tgcgctgaac ccgcatgaat actggatttc cacagggttg gaaggggagt
     1021 attcggaact tgcaattcta ctttcttgca acacattgtt tttatttgtt ttttgttttc
     1081 agcaccccaa gttatccaca ggctcgccgt taagttttta gatcttgttt ttaagatctt
     1141 gtttttaata cttgttttag gggcgaaatt cattaataaa atcaatatgt tgcagtggta
     1201 tatgtggagg aatttaaggt atatgtggag gaatttaagg tgtttaggtg gaggaattta
     1261 aggtaaaggt ggaggaattt aaggtgttat tcacagaaat gtgaggatat aaaaaaaaat
     1321 attccacatt tcttatttgt ggggcacatt aaagcatcac cacatttgaa cgggatcttt
     1381 gtatgtcgga cttgattgcc tacaagtcga atgctttggt tgaggccagc tacaagttga
     1441 ccctacagga acaacgtttt ctgttgctgt gtatcagtcg attgaaatct ggtgctgatg
     1501 ctgaattgca aaagacaatg accattaccg ctgcggaata ttttgattca ttccctgaca
     1561 tggggcggaa aaatgccgag gttcagttac aggaagcgat cgatcgttta tgggacaggt
     1621 cgatcattct caagaatgac gagaagcgtg aggagttccg ctggatccag tatcgggcac
     1681 agtacgctaa aggtgaggcc aaggctcgaa taaccttttc tgacgcggta atgccttatc
     1741 tgacgcaact gaaggggcaa ttcacgcgcg ttgttataaa aaacatatca ggtttatcaa
     1801 gtagttacag tataagaata tacgagttcc tccagcaatt ccgcagtacg ggagagagaa
     1861 ttattgctct taatgacttt cgttcaatgt tagggattga aaataaatac aaacaattca
     1921 gagacttaaa taaaatacta ataaaaccct gtgttgacga actgaacaaa aaaagcgacc
     1981 tggctgtaac ggttgagacg atcaaaaagg ggcgcacggt tgtagccctg cattttcgct
     2041 tcaaggaaga caaacagatc aagatgacga tctaaaatcg attttaaggc acctaaaacg
     2101 ctccctgctg cgtttttttt gtgttagtag tgcgaaggta ctattgaagt gaaaaattgc
     2161 gccaaaaacg ctctgatgca gcgaaaaaag aacccccaat ttttgggggc ggaaaaacaa
     2221 aactatgctt gcgttatgtg agtgtgcttc ttgcattcat ccctgtcgat gaacatcgaa
     2281 gaacatcaac gaacataaca cgatgttaaa caaaacaaaa tattgttcac attcactgtg
     2341 accaaccgcg atcatgtctc ctctcggtgg tgtgtgttct tgcatcttcc tcgcgccgcc
     2401 attcgtccca ggtacgattg aaacccagcg agcggaacag atgatccggc tgtttttctg
     2461 gtgtgttgac ggcagcaaaa agcggtacct cacgggtttt cagatgaaac tccataagtt
     2521 ccggcgcagg tgatatgtgg ctgtctgcat cgtgatttac ggcaacacca taccctgcat
     2581 accgtaaccc cttatcggtc agtgcactga tgaccagctg gctgttatcg gctgagggaa
     2641 cggcaaacgc gggatacagc gtaccattaa gccggacaac accgcccaga gagtcatcca
     2701 cgcccatgac cagcaaaagc tgaagctggc gggtttcccg gtcgacagaa ctcattaccg
     2761 gcatcagcgt cggtggcaga cgtccctgcg taaaatccac cttccttgct gccagtgatg
     2821 gcatggctgg ctggcggtct tctccaagac agaaagactc cggccatgtc ttcggctggc
     2881 ggagattgcg ggtatattgc ggccatgtct ggcaaacctg cgtcagaagt tgctcaaagg
     2941 tcgcagagga ataaacacgt tgcagtggtg gatgttgacc gatttcgctt cggtcacaga
     3001 tataaccact cctgtcacgc attaaatcaa cacgctcaaa gattctggtg cggtatttct
     3061 ccagctcgtt cccccagagc gtgtattctc cgttccggtt gtgaagcaga aggtaacagg
     3121 tcatttcccc gttaccaggc atgggggcct cgccataccc cgtaacgact gcgctcagta
     3181 cccctgaatc cataacggca ttgtcatttt tcctgagctg ttccgctcgt cgctccgtgc
     3241 gactacgttc tgtatcctcc tgctccttcc ggcgcaattc ctcttcacgt ttaagcaact
     3301 ggactctgag agctgcaagg ccggatgccc cccactgctg ccactgtttt tcaaatgccg
     3361 tctgactcgc gggaatgtcc tgtttctcca ccttccggta atgctgtcgc aatttttcca
     3421 tttgctggct cagcgactga atttttccct gttcgctacg gtattccggt gccgcccatt
     3481 gcatcagggg aatacgggaa aaaccggacg aaaacggtga tgattttttc aggctggcag
     3541 catggctcat cgcttccttt cgttcggtgt tcagctcttc ccagcgtctg cgcgtcgcct
     3601 gcatatctgc catcatcgac atggcattac tggtgagttt ccatgccgca ttactgtcct
     3661 tcggcaacgc ttcgatgatg tcacgtagtg tgtacgaagt tgcgttgtca ggaagcacga
     3721 tattcagaag gtcagccaca cggcgggcag gctctgtcag cccgctgttc ctgagttcag
     3781 tgcgggaaat ctgtatttcc aggttaagcc tgttaatcag acgattctgt tcgccgcgtt
     3841 ctgtttcgat accgcgtgtt tccatcgcac aggcagactt tccgaggtga ataccaggcg
     3901 ttttctcaag cccctgtcgc tcgtatgaac gatggtctat ctcttcctga taaccggcgt
     3961 tcgccagtgc tctgtttgca tggtcagccc atgatgcacg ccacgtctcg gcatgtgtcc
     4021 ggtcgttcca gtccctgacc tttccgccga acccagcagg tccgacagcc ctcgtggtca
     4081 gcatgatgtg cgcatgggga tttgttttat ccatgtgatg gaacgccaca tcagcaatca
     4141 tgccctgact gacaaagttt tctctgacaa aggcgagaac ggtttcccgt gcggcatcct
     4201 gcggcagttc acgggggata gcgagttcaa tttcccgcg
//
