LOCUS       NZ_LT571451             2366 bp    DNA     linear   CON 14-FEB-2024
DEFINITION  Staphylococcus epidermidis isolate BPH0662 plasmid 3.
ACCESSION   NZ_LT571451
VERSION     NZ_LT571451.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA3982825
            Assembly: GCF_900086615.2
KEYWORDS    RefSeq.
SOURCE      Staphylococcus epidermidis
  ORGANISM  Staphylococcus epidermidis
            Bacteria; Bacillota; Bacilli; Bacillales; Staphylococcaceae;
            Staphylococcus.
REFERENCE   1
  AUTHORS   Lee,J., Stinear,T., Seemann,T., Kwong,J., Buultjens,A., Baines,S.,
            Carter,G., Monk,I., Vandelannoote,K. and Goncalves Da Silva,A.
  TITLE     Direct Submission
  JOURNAL   Submitted (06-NOV-2019) UNIVERSITY OF MELBOURNE, Doherty Centre for
            Applied Microbial Genomics, Doherty Institute for Infection and
            Immunity, 792 Elizabeth St, Melbourne, VIC, 3000, Australia
REFERENCE   2
  AUTHORS   Stinear,T., Seemann,T., Kwong,J., Buultjens,A., Goncalves da
            Sivla,A., Baines,S., Carter,G., Bulach,D.M. and Monk,I.
  TITLE     Direct Submission
  JOURNAL   Submitted (11-MAY-2016) UNIVERSITY OF MELBOURNE, Doherty Centre for
            Applied Microbial Genomics, Doherty Institute for Infection and
            Immunity, 792 Elizabeth St, Melbourne, VIC, 3000, Australia
COMMENT     ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 02/14/2024 01:23:07
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,806
            CDSs (total)                      :: 2,725
            Genes (coding)                    :: 2,646
            CDSs (with protein)               :: 2,646
            Genes (RNA)                       :: 81
            rRNAs                             :: 6, 5, 5 (5S, 16S, 23S)
            complete rRNAs                    :: 6, 5, 5 (5S, 16S, 23S)
            tRNAs                             :: 61
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 79
            CDSs (without protein)            :: 79
            Pseudo Genes (ambiguous residues) :: 0 of 79
            Pseudo Genes (frameshifted)       :: 45 of 79
            Pseudo Genes (incomplete)         :: 44 of 79
            Pseudo Genes (internal stop)      :: 25 of 79
            Pseudo Genes (multiple problems)  :: 28 of 79
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            LT571451.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
FEATURES             Location/Qualifiers
     source          1..2366
                     /organism="Staphylococcus epidermidis"
                     /mol_type="genomic DNA"
                     /isolate="BPH0662"
                     /db_xref="taxon:1282"
                     /plasmid="3"
     gene            1..477
                     /locus_tag="BN6763_RS14320"
     CDS             1..477
                     /locus_tag="BN6763_RS14320"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000664727.1"
                     /GO_process="GO:0006260 - DNA replication [Evidence IEA];
                     GO:0006276 - plasmid maintenance [Evidence IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="replication/maintenance protein RepL"
                     /protein_id="WP_000664727.1"
                     /translation="MKERYGTVYKGSQRLIDEESGEVIEVDKLYRKQTSGNFVKAYIVQ
                     LISMLDMIGGKKLKIVNYILDNVHLSNNTMIATTREIAKATGTSLQTVITTLKILEEGN
                     IIKRKTGVLMLNPELLMRGDDQKQKYLLLEFGNFEQEANEKQENALSDYYSFKD"
                     /name="replication/maintenance protein RepL"
     gene            1185..1919
                     /gene="erm(C)"
                     /locus_tag="BN6763_RS14325"
     ARG             1186..1916
                     /name="erm(C)"
                     /gene="erm(C)"
                     /gene_name="23S rRNA (adenine(2058)-N(6))-methyltransferase
                     Erm(C)"
                     /tool="amrfinderplus"
                     /drug_class="LINCOSAMIDE/MACROLIDE/STREPTOGRAMIN"
                     /identity="100.0"
                     /coverage="100.0"
     ARG             1186..1919
                     /name="ErmC"
                     /gene="ErmC"
                     /gene_name="Erm 23S ribosomal RNA methyltransferase"
                     /tool="rgi"
                     /drug_class="macrolide antibiotic; lincosamide antibiotic;
                     streptogramin antibiotic; streptogramin A antibiotic;
                     streptogramin B antibiotic"
                     /identity="99.59"
                     /coverage="100.0"
     Typing          2..487
                     /name="rep_cluster_1947"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="99.591"
                     /coverage="100.0"
                     /evalue="0.0"
ORIGIN
        1 atgaaagaaa gatatggaac agtctataaa ggctctcaga ggctcataga cgaagaaagt
       61 ggagaagtca tagaggtaga caagttatac cgtaaacaaa cgtctggtaa cttcgtaaag
      121 gcatatatag tgcaattaat aagtatgtta gatatgattg gcggaaaaaa acttaaaatc
      181 gttaactata tcctagataa tgtccactta agtaacaata caatgatagc tacaacaaga
      241 gaaatagcaa aagctacagg aacaagtcta caaacagtaa taacaacact taaaatctta
      301 gaagaaggaa atattataaa aagaaaaact ggagtattaa tgttaaaccc tgaactacta
      361 atgagaggcg acgaccaaaa acaaaaatac ctcttactcg aatttgggaa ctttgagcaa
      421 gaggcaaatg aaaaacaaga aaatgcatta tctgattatt attctttcaa ggactagtat
      481 aacataaaat cgtctacaaa tagacaaaaa acctgcacgc ttaatgtaga tcaaaagctt
      541 aacgcaaatg aaatagattg acctcccaat aacaccacgt agttattggg aggtcaatct
      601 atgaaatgcg attaagcttt ttctaattca cataagcgtg caggtttaaa gtacataaaa
      661 aatataatga aaaaaagcat cattatacta acgttatacc aacattatac tctcattata
      721 ctaattgctt attccaattt cctattggtt ggaaccaaca ggcgttagtg tgttgttgag
      781 ttggtacttt catgggatta atcccatgaa acccccaacc aactcgccaa agctttggct
      841 aacacacacg ccattccaac caatagtttt ctcggcataa agccatgctc tgacgcttaa
      901 atgcactaat gccttaaaaa aacattaaag tctaacacac tagacttatt tacttcgtaa
      961 ttaagtcgtt aaaccgtgtg ctctacgacc aaaagtataa aacctttaag aactttcttt
     1021 tttcttgtaa aaaaagaaac tagataaatc tctcatatct tttattcaat aatcgcatca
     1081 gattgcagta taaatttaac gatcactcat catgttcata tttatcagag ctcgtgctat
     1141 aattatacta attttataag gaggaaaaaa taaagagggt tataatgaac gagaaaaata
     1201 taaaacacag tcaaaacttt attacttcaa aacataatat agataaaata atgacaaata
     1261 taagattaaa tgaacatgat aatatctttg aaatcggctc aggaaaaggg cattttaccc
     1321 ttgaattagt acagaggtgt aatttcgtaa ctgccattga aatagaccat aaattatgca
     1381 aaactacaga aaataaactt gttgatcacg ataatttcca agttttaaac aaggatatat
     1441 tgcagtttaa atttcctaaa aaccaatcct ataaaatatt tggtaatata ccttataaca
     1501 taagtacgga tataatacgc aaaattgttt ttgatagtat agctgatgag atttatttaa
     1561 tcgtggaata cgggtttgct aaaagattat taaatacaaa acgctcattg gcattatttt
     1621 taatggcaga agttgatatt tctatattaa gtatggttcc aagagaatat tttcatccta
     1681 aacctaaagt gaatagctca cttatcagat taaatagaaa aaaatcaaga atatcacaca
     1741 aagataaaca gaagtataat tatttcgtta tgaaatgggt taacaaagaa tacaagaaaa
     1801 tatttacaaa aaatcaattt aacaattcct taaaacatgc aggaattgac gatttaaaca
     1861 atattagctt tgaacaattc ttatctcttt tcaatagcta taaattattt aataagtaag
     1921 ttaagggatg cataaactgc atcccttaac ttgtttttcg tgtacctatt ttttgtgaat
     1981 cgattatgtc ttttgcgcat tcacttcttt tctatataaa tatgagcgaa gcgaataagc
     2041 gtcggaaaag cagcaaaaag tttccttttt gctgttggag catgggggtt cagggggtgc
     2101 agtatctgac gtcaatgccg agcgaaagcg agccgaaggg tagcatttac gttagataac
     2161 cccctgatat gctccgacgc tttatataga aaagaagatt caactaggta aaatcttaat
     2221 ataggttgag atgataaggt ttataaggaa tttgtttgtt ctaatttttc actcattttg
     2281 ttctaatttc ttttaacaaa tgttcttttt tttttagaac agttatgata tagttagaat
     2341 agtttaaaat aaggagtgag aaaaag
//
