LOCUS       NZ_LR898884             2073 bp    DNA     circular CON 25-JUN-2023
DEFINITION  Escherichia coli strain MSB1_4I isolate MSB1_4I plasmid 11, complete
            sequence.
ACCESSION   NZ_LR898884
VERSION     NZ_LR898884.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA3357480
            Assembly: GCF_905071835.1
KEYWORDS    RefSeq.
SOURCE      Escherichia coli
  ORGANISM  Escherichia coli
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Escherichia.
REFERENCE   1
  AUTHORS   Hawkey,J.
  TITLE     Direct Submission
  JOURNAL   Submitted (03-NOV-2020) THE UNIVERSITY OF MELBOURNE, 30 Flemington
            Rd, Australia
COMMENT     ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 06/25/2023 10:20:19
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.5
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,563
            CDSs (total)                      :: 5,440
            Genes (coding)                    :: 5,157
            CDSs (with protein)               :: 5,157
            Genes (RNA)                       :: 123
            rRNAs                             :: 8, 7, 7 (5S, 16S, 23S)
            complete rRNAs                    :: 8, 7, 7 (5S, 16S, 23S)
            tRNAs                             :: 95
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 283
            CDSs (without protein)            :: 283
            Pseudo Genes (ambiguous residues) :: 0 of 283
            Pseudo Genes (frameshifted)       :: 84 of 283
            Pseudo Genes (incomplete)         :: 203 of 283
            Pseudo Genes (internal stop)      :: 41 of 283
            Pseudo Genes (multiple problems)  :: 37 of 283
            Pseudo Genes (short protein)      :: 3 of 283
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            LR898884.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..2073
                     /organism="Escherichia coli"
                     /mol_type="genomic DNA"
                     /strain="MSB1_4I"
                     /isolate="MSB1_4I"
                     /isolation_source="rectal swab"
                     /host="Homo sapiens"
                     /db_xref="taxon:562"
                     /plasmid="11"
                     /geo_loc_name="Australia"
                     /collection_date="2014-03"
     gene            565..1527
                     /locus_tag="JMX41_RS27485"
     CDS             565..1527
                     /locus_tag="JMX41_RS27485"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012421200.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein rep"
                     /protein_id="WP_201555668.1"
                     /translation="MSEDKFLSDYSPRDASWDTQRTFTDSVGGIYQTAAEFERYALRMA
                     SCSGLLRFGWSRLMETGETRLRLRSAQFCRVRHCPVCQWRRTLMWQARFYQALPKIVAD
                     YPSSRWLFLTLTVRNCAIDDLGETLTAMNSAFQRLKDRKEFAPVQGWIRATEVTRGKDG
                     SAHPHFHCLLMVPPSWFTRDYVKQARWVELWRDCLRVNYEPNIDIRAVKTKTGEVVANV
                     AEQLQSAVAETLKYSVKPEDMANDPEWFLELTRQLHKRRFISTGGALKNVLQLDRETNE
                     DLVIADDVGDGTDDGKRTAFVWDSGKRRYKRAPEKDKSD"
                     /name="protein rep"
     gene            1531..1797
                     /locus_tag="JMX41_RS27490"
     CDS             1531..1797
                     /locus_tag="JMX41_RS27490"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001024536.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_001024536.1"
                     /translation="MNINIEYLNGNKTIGLFFLRSEAVIPDRFKNLILLIDGLSFGTFG
                     FHPHEGFEDELILYIQKTNERVKTLFVKIDLNGIKFGFLRTHS"
                     /name="hypothetical protein"
ORIGIN
        1 aaagtccgtt aaaagcatga tgccatctcc gagagttaat ctcgtcaaat gctaaatcgt
       61 gggggtcccc tttggggttc cgatttagtg attgacgaca ctaccgatta aaaaacttat
      121 gcggggtgga tggtttcacg aagtgagacc atccacctgt aagacagggt tttgttttta
      181 tcccctgttt tggtgatcgg gtgtgtggaa aagattgggg taagccgttc gggggtgctt
      241 gttttggggg ttaaagttgt ggttattttt tgcgcaattc tcgcgcgtga tccttgtatt
      301 tatacttaag ggataactct gggatggaaa atataggttc aggccagcaa tggcgcggct
      361 ttggtgggtg tttgacgtgt agaagatttt ggcgcagaat tgaggtgttt ttaatcggcg
      421 ttggggagtg cgtcaacact ccccaacatt tcgaatgtgt cacctcagcg gcaaactctg
      481 gtgacatgta ctggcacgca atgcacaggt acgtgatgaa tataccacat caaatcacag
      541 cctgcccaga tcggagcagg ctgaatgtca gaagataaat tcctttcgga ctacagcccc
      601 cgtgatgcgt cttgggatac ccagcgcacg tttaccgatt ccgtgggcgg tatctatcag
      661 accgctgcgg aattcgagcg ctacgcgctc cgtatggcct cctgtagcgg tttattgcgt
      721 tttggctggt ctaggctcat ggaaaccgga gaaacgcgcc tacggcttcg tagcgcgcaa
      781 ttttgccgtg tccgtcattg tcctgtctgc cagtggagaa gaaccctcat gtggcaagct
      841 cgtttttatc aggctctacc aaaaatcgtt gcggattacc catcttcccg ttggttgttt
      901 ctgacgttaa ccgtcaggaa ctgcgcgatc gatgatttgg gggaaacgct gacagccatg
      961 aattcggcct ttcagcgact gaaggacagg aaagagttcg cgccggttca gggctggatt
     1021 cgcgcgacgg aagttacacg gggaaaagat ggcagtgcac atccgcattt tcactgttta
     1081 ctgatggttc cgccgtcatg gttcacacgt gattatgtaa aacaggctcg ttgggtggaa
     1141 ctctggcgcg attgcttgcg ggtgaactat gagccgaata tcgatattcg ggcagtaaaa
     1201 actaagacag gtgaggttgt ggccaacgtt gccgagcaac tgcaaagcgc ggttgctgaa
     1261 acgctgaaat actccgttaa accggaagat atggcaaacg atcctgagtg gtttcttgag
     1321 ctgacgcggc agcttcacaa gcgccgtttt atctcgaccg gtggggcgct aaaaaacgtc
     1381 ctccagttgg atcgagaaac caatgaggat cttgtcattg ccgacgatgt aggggatggc
     1441 actgatgacg ggaagcggac ggcgtttgtc tgggattcag gtaaacggcg ttacaaacgc
     1501 gcccctgaga aggataaatc ggattaacgt atgaatatta atattgaata cctgaatgga
     1561 aataagacta ttggtttatt ttttttaaga agtgaagcgg tgattcctga caggtttaaa
     1621 aaccttattt tgcttattga tggattaagt tttggcacat ttggttttca tccgcacgaa
     1681 ggttttgagg atgaattaat tttatatatt cagaaaacaa acgagagggt aaaaactctt
     1741 tttgtgaaaa tagatttaaa cggtatcaag tttggatttt taagaacgca ttcttagttc
     1801 tggaaaagag ccagcggcag gctgaggtga taggtacgag attgcatgca atctctagtg
     1861 gtctgtctat cctgcattat cctcagcctt gccaactcga caccaatgca ggatagacaa
     1921 tccgatgtca aatgttaaca ctctgcgagt ggtacatttt ccccggatta tcgtcctgag
     1981 cctgccgctg gctctctttc taccgcctcg ctttgctcgt tgctcaacgc ctcacagaca
     2041 cggattaaaa tccgcatccg ttcaccgttt ttt
//
