LOCUS       NZ_LR890739             3514 bp    DNA     circular CON 18-JUN-2023
DEFINITION  Klebsiella pneumoniae strain INF323 isolate INF323 plasmid 5,
            complete sequence.
ACCESSION   NZ_LR890739
VERSION     NZ_LR890739.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA3357196
            Assembly: GCF_904866505.1
KEYWORDS    RefSeq.
SOURCE      Klebsiella pneumoniae
  ORGANISM  Klebsiella pneumoniae
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Klebsiella/Raoultella group; Klebsiella.
REFERENCE   1
  AUTHORS   Hawkey,J.
  TITLE     Direct Submission
  JOURNAL   Submitted (16-OCT-2020) THE UNIVERSITY OF MELBOURNE, 30 Flemington
            Rd, Australia
COMMENT     ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 06/18/2023 12:35:05
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.5
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,736
            CDSs (total)                      :: 5,612
            Genes (coding)                    :: 5,428
            CDSs (with protein)               :: 5,428
            Genes (RNA)                       :: 124
            rRNAs                             :: 9, 8, 8 (5S, 16S, 23S)
            complete rRNAs                    :: 9, 8, 8 (5S, 16S, 23S)
            tRNAs                             :: 88
            ncRNAs                            :: 11
            Pseudo Genes (total)              :: 184
            CDSs (without protein)            :: 184
            Pseudo Genes (ambiguous residues) :: 0 of 184
            Pseudo Genes (frameshifted)       :: 66 of 184
            Pseudo Genes (incomplete)         :: 132 of 184
            Pseudo Genes (internal stop)      :: 18 of 184
            Pseudo Genes (multiple problems)  :: 28 of 184
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            LR890739.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..3514
                     /organism="Klebsiella pneumoniae"
                     /mol_type="genomic DNA"
                     /strain="INF323"
                     /isolate="INF323"
                     /isolation_source="wound swab"
                     /host="Homo sapiens"
                     /db_xref="taxon:573"
                     /plasmid="5"
                     /geo_loc_name="Australia"
                     /collection_date="2014-03"
     gene            join(3359..3514,1..60)
                     /locus_tag="JMX74_RS28565"
     CDS             join(3359..3514,1..60)
                     /locus_tag="JMX74_RS28565"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015328239.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MbeD family mobilization/exclusion protein"
                     /protein_id="WP_015328239.1"
                     /translation="MTELEKQLLSALEQLQQDYSRRLDEWESAFEEWRKMSGLMQRENA
                     ALSERVSGLSRQVQSLSEQLRRLSTG"
                     /name="MbeD family mobilization/exclusion protein"
     gene            complement(474..665)
                     /locus_tag="JMX74_RS28570"
     CDS             complement(474..665)
                     /locus_tag="JMX74_RS28570"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_071008427.1"
                     /translation="MLKKNEIILIKSCGNSKTKIFLRGVDEGLMIDASFEDIKFAINNN
                     LHDLLGIQAETTKLKLTK"
                     /name="hypothetical protein"
     gene            1836..2177
                     /locus_tag="JMX74_RS28575"
     CDS             1836..2177
                     /locus_tag="JMX74_RS28575"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006122514.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MobC family plasmid mobilization relaxosome
                     protein"
                     /protein_id="WP_071599364.1"
                     /translation="MADKRNKMLTMWVTEDEHRRLLERCDGKQLAAWMRQTCLDEKPTR
                     AGRLPSISPALLRQLAGMGNNLNQIARKVNAGGAGHDRVQIVAALMAIDAGLERLRHAV
                     LEKGPDDDC"
                     /name="MobC family plasmid mobilization relaxosome protein"
     gene            2386..>2814
                     /locus_tag="JMX74_RS29015"
                     /pseudo=""
     CDS             2386..>2814
                     /locus_tag="JMX74_RS29015"
                     /inference="COORDINATES: protein motif:HMM:NF015397.2"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo=""
                     /codon_start=1
                     /transl_table=11
                     /product="relaxase/mobilization nuclease domain-containing
                     protein"
                     /name="relaxase/mobilization nuclease domain-containing
                     protein"
     gene            2855..3352
                     /locus_tag="JMX74_RS28585"
     CDS             2855..3352
                     /locus_tag="JMX74_RS28585"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020325392.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MbeB family mobilization protein"
                     /protein_id="WP_015328238.1"
                     /translation="MSSLLTASRDFEEKSKAQQQLTEERLKAAFSKHENVVKSELNASA
                     KRINDAISAHEQGMNAAMQSNRLSVLRMVGRTWLTITMVSGLLFASLSGVLWYQGNRIA
                     ANLAEIRQQRDTLSKLHMQTWGVTYLENRNGRFLVLPEGMKAETGRTVDNKTRNAVKLV
                     RE"
                     /name="MbeB family mobilization protein"
     Typing          1579..1751
                     /name="MOBP"
                     /typing="oriT"
                     /tool="MOB-suite"
                     /identity="89.655"
                     /coverage="100.0"
                     /evalue="9.54e-56"
     Typing          complement(1108..1654)
                     /name="rep_cluster_2335"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="92.909"
                     /coverage="90.0"
                     /evalue="0.0"
     Typing          2168..3513
                     /name="MOBP"
                     /typing="relaxase"
                     /tool="MOB-suite"
                     /identity="100.0"
                     /coverage="99.0"
                     /evalue="0.0"
ORIGIN
        1 ggcttgagca ggcaggtgca gagtttgagc gagcagctgc gccggttatc gacaggctga
       61 atgagattga gcaacagcga tacgggcaaa caacggaaaa ggaaccagag aagacagcag
      121 atctggtacc ggaacggcaa cgcacattat ctcatggtga cagggagtat ggagactgat
      181 aaacgcccgt ctcaggtggc ctgagcgtga cggggatcat ggccattttc tgcgatttca
      241 gcacacagag agtctttttt aaccgaaatc accggctatg cagtgatgtg aataagtgat
      301 gcatatgcgt aaaataaatc aggtgcgttt ctggtggttt tcggtgtact tgccaccacc
      361 ttttgcccgt cagccatcag aaacgccctg agtgcctccg gcgcggtgcg ggtaagaaga
      421 cgttatggta aatcggtggc tttatttcga tccttcatgc ttcaggggct gtatcacttt
      481 gttagtttta gttttgtggt ttcggcttgg attccgagaa gatcgtggag gttattgttg
      541 atagcaaatt ttatatcttc aaaacttgca tcaatcatga gtccctcatc cacacctcgt
      601 aaaaaaattt ttgtttttga gttaccacat gattttatta agataatttc attttttttt
      661 aacatgacat tgtcattgtt tgttgtcgtc agatgaatca ttatcgttgt ttttgtgtgt
      721 gtttgttaag gctgctaaga ttattcctaa ccactgattt tgtacatatc atcaaaaaaa
      781 taaaaaaact aatgccctgt ggtgggtatg taacaaatca cggggagcgg gtcagaacta
      841 cgccaaaact ttgaatgatc gggtggcagg ctaaatgaaa tcttgagatt cattcagcct
      901 cgtcgtaatc tcttgctctg taaacgaaaa aaccgccttg cagggcggtt tttcgaaggt
      961 taagtcagtt ggggaactgc ttaaccaggt aactggcttc agcagagcgc agataccaaa
     1021 tactgtcctt ccagtgtagc cgtagttagg ccaccacttc aagaactctg tagcatcacc
     1081 tacattaact cgctctgcta atcctgttac cagtggctgc tgccagtggc gctttggcgt
     1141 gtctttccgg gttggactca agacgatagt taccggataa ggcgcagcag tcggactgaa
     1201 cggggggttc gtgcatacag tccagcttgg agcgaactgc cttcccggaa ctgagtgtca
     1261 ggcgtggaat gagataaacg cggccataac agcggaatga caccggtaaa ccgaaaggca
     1321 ggaacaggag agcgcacgag ggagctacca gggggaaacg cctgggatct ttatagtcct
     1381 gtcgggtttc gccgccactg atttgagcgt cagattttgt gatgcttgtc aggggggcgg
     1441 agcctatgga aaaacggctt cgccgcggcc tcatcgcttc cctgttaagt ttcttcctgg
     1501 tatcttcctg gaaatttccg ccccgcccgt aagccggcac cgctcgccgc agccgaacga
     1561 ccgagcgcag cgagtcagtg agcgaggaag cggaatatct tctgtatcgc atattctgct
     1621 tacgctctgc tgcagcattt ttcttctgcc gcataaggcg ctttcctgat tatcgcactc
     1681 atgccaacat actaagccag tatacactcc gctagcgcta cgtgactggt tcagggctgc
     1741 gccccgaaac cccactgacg cgcctgcggc ttgtccaacc ccgcgccgac cgggaaaggc
     1801 tttcccgtcc gtcacggcgt tatcaggagg cgattctggc agataaacgc aacaagatgc
     1861 tcacgatgtg ggtgacggaa gacgaacacc ggcggttgct tgagcggtgc gacggaaaac
     1921 aactggcggc gtggatgcgc cagacctgcc ttgatgagaa accgacacgc gccggcaggc
     1981 ttccctcgat ttcgcccgcg ctgctgcgtc agcttgccgg catgggcaat aacctgaacc
     2041 agatcgcccg gaaagtgaac gccggtggtg ccggtcatga ccgggtgcag atcgtggcag
     2101 cgctgatggc gatcgatgcc ggtctggaac ggttgcggca tgccgtactg gaaaaagggc
     2161 cggacgatga ttgttaaatt ccatccccgg ggtcgcggcg ggggcgccgg tcctgtggat
     2221 tatcttctgg gtaaagaccg gcagcgtgaa ggtgccagcg tcctgcaggg gaagccggaa
     2281 gaagtccggg agctgattga tgcgtcgccg tatgtgaaaa aatatacctc cggggtgctg
     2341 tcattcgcgg aggcggacct gccgccgggt cagcgtgaaa aactgatggc cagctttgag
     2401 cgggttctga tgcccggact cgataaagac cagtacagca ttctgtgggt ggaacacgca
     2461 gacaagggtc gtcttgagct gaattttctg atccccaata ccgaattact gacggggaaa
     2521 cgcctccagc cgtattacga tcgtgccgac cggccgcgca tcgatgcgtg gcagacagtg
     2581 gtcaacggca ggctggggct acatgatccg aacgacccgg agaaccggcg ggcgctggtc
     2641 acgccttcag gactgccaga aacgaagcag gaagccgcag agacgattac acggggtttg
     2701 ctgatgttag cctcatcagg agagctgaaa acgcgtgatg acgtcacagg ggcgctcaca
     2761 gcggccggtt ttgaggtggt cagaaccaca aaaaacagta tcagcattgc cgacccggac
     2821 ggggggcgaa atatccgact gaggggagcc atttatgagc agtcttttaa cggcctcgag
     2881 ggacttcgag gagaaatcga aagcacagca gcagcttacc gaagagaggc tgaaagccgc
     2941 attcagcaag cacgagaacg ttgtcaaatc ggaactgaac gcaagcgcga agagaatcaa
     3001 cgacgccatc agcgcccacg aacaggggat gaacgcggcg atgcagtcga accggctgag
     3061 cgtgctgcga atggtcgggc ggacgtggct gaccatcacc atggtgtcag ggctgctgtt
     3121 cgccagcctg agcggggtgc tgtggtacca ggggaaccgg atagcggcga acctggcgga
     3181 aatcaggcag cagagagata cgctgtcgaa actgcacatg cagacgtggg gcgtgaccta
     3241 tctggagaac cgcaacggac ggtttctggt gctgccggag gggatgaaag ccgaaacggg
     3301 ccggacggtg gacaacaaga cgcggaacgc ggtgaagctg gtacgggagt agagcagaat
     3361 gacggaactg gaaaaacaat tgctgagcgc gttagagcag ctacagcagg actactcgag
     3421 aaggctggac gagtgggaga gcgccttcga ggaatggcgg aagatgtctg gtcttatgca
     3481 acgggagaac gcggcgctga gcgagcgcgt gtcg
//
