LOCUS       NZ_LR890684             3223 bp    DNA     circular CON 18-JUN-2023
DEFINITION  Klebsiella pneumoniae strain INF279 isolate INF279 plasmid 6,
            complete sequence.
ACCESSION   NZ_LR890684
VERSION     NZ_LR890684.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA3357273
            Assembly: GCF_904866405.1
KEYWORDS    RefSeq.
SOURCE      Klebsiella pneumoniae
  ORGANISM  Klebsiella pneumoniae
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Klebsiella/Raoultella group; Klebsiella.
REFERENCE   1
  AUTHORS   Hawkey,J.
  TITLE     Direct Submission
  JOURNAL   Submitted (16-OCT-2020) THE UNIVERSITY OF MELBOURNE, 30 Flemington
            Rd, Australia
COMMENT     ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 06/18/2023 15:42:22
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.5
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,573
            CDSs (total)                      :: 5,450
            Genes (coding)                    :: 5,300
            CDSs (with protein)               :: 5,300
            Genes (RNA)                       :: 123
            rRNAs                             :: 9, 8, 8 (5S, 16S, 23S)
            complete rRNAs                    :: 9, 8, 8 (5S, 16S, 23S)
            tRNAs                             :: 86
            ncRNAs                            :: 12
            Pseudo Genes (total)              :: 150
            CDSs (without protein)            :: 150
            Pseudo Genes (ambiguous residues) :: 0 of 150
            Pseudo Genes (frameshifted)       :: 62 of 150
            Pseudo Genes (incomplete)         :: 87 of 150
            Pseudo Genes (internal stop)      :: 29 of 150
            Pseudo Genes (multiple problems)  :: 24 of 150
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            LR890684.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..3223
                     /organism="Klebsiella pneumoniae"
                     /mol_type="genomic DNA"
                     /strain="INF279"
                     /isolate="INF279"
                     /isolation_source="urine"
                     /host="Homo sapiens"
                     /db_xref="taxon:573"
                     /plasmid="6"
                     /geo_loc_name="Australia"
                     /collection_date="2014-01"
     gene            complement(153..485)
                     /locus_tag="JMX25_RS27730"
     CDS             complement(153..485)
                     /locus_tag="JMX25_RS27730"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008784643.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="EmrE family multidrug efflux SMR transporter"
                     /protein_id="WP_001099531.1"
                     /translation="MNTYIFLGGAIVAEVIGTTFMKYSEGFTRLWPSVGTAISYCAAFY
                     LLSQTLENIPTGIAYAIWSGAGIVLISLAGWLVSGQKLDWPAIAGMFLICVGVLVINIF
                     SKSSAH"
                     /name="EmrE family multidrug efflux SMR transporter"
     gene            complement(653..868)
                     /locus_tag="JMX25_RS27735"
     CDS             complement(653..868)
                     /locus_tag="JMX25_RS27735"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000137421.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MbeD family mobilization/exclusion protein"
                     /protein_id="WP_024195375.1"
                     /translation="MTELEKQLLSALEQLQQDYSKRLDEWENAFAEWRTMSGLIQRENA
                     ALNERVTVLSRQVQSLSEQLRRLSKG"
                     /name="MbeD family mobilization/exclusion protein"
     gene            complement(872..1357)
                     /locus_tag="JMX25_RS27740"
     CDS             complement(872..1357)
                     /locus_tag="JMX25_RS27740"
                     /inference="COORDINATES: protein motif:HMM:NF016710.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MbeB family mobilization protein"
                     /protein_id="WP_025367738.1"
                     /translation="MNSLLTLAKDLEQKSKAQQQTTGEMLKAAFSEHEKSVRAELSESE
                     KRISAAILDHDRKLSSAMSQRTKGMLRMVSQTWLTIVLVSALLIASSAGILWWQGQQIL
                     ENYTTIREQKSTQAMLSERNSGVQLSTCGEQRRRCVRVNPEAGQFGEDSSWMILAGK"
                     /name="MbeB family mobilization protein"
     gene            complement(<1392..1826)
                     /locus_tag="JMX25_RS28075"
                     /pseudo=""
     CDS             complement(<1392..1826)
                     /locus_tag="JMX25_RS28075"
                     /inference="COORDINATES: protein motif:HMM:NF015397.2"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo=""
                     /codon_start=1
                     /transl_table=11
                     /product="relaxase/mobilization nuclease domain-containing
                     protein"
                     /name="relaxase/mobilization nuclease domain-containing
                     protein"
     gene            complement(2035..2358)
                     /locus_tag="JMX25_RS27750"
     CDS             complement(2035..2358)
                     /locus_tag="JMX25_RS27750"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000957083.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MobC family plasmid mobilization relaxosome
                     protein"
                     /protein_id="WP_004193914.1"
                     /translation="MLTMWVTEDEHRRLLERCEGKQLAAWMRQTCLDEKPARAGKLPSI
                     SPALLRQLAGMGNNLNQIARQVNAGGGSGHDRVQIVAALMAIDAGLERLRHAVLEKGAD
                     DDR"
                     /name="MobC family plasmid mobilization relaxosome protein"
     ARG             complement(154..485)
                     /name="qacG"
                     /gene="qacG"
                     /gene_name="small multidrug resistance (SMR) antibiotic
                     efflux pump"
                     /tool="rgi"
                     /drug_class="disinfecting agents and antiseptics"
                     /identity="41.35"
                     /coverage="102.8"
     Typing          complement(2455..2646)
                     /name="MOB_unknown"
                     /typing="oriT"
                     /tool="MOB-suite"
                     /identity="92.308"
                     /coverage="89.0"
                     /evalue="3.38e-71"
     Typing          2626..3109
                     /name="ColRNAI_rep_cluster_1987"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="84.756"
                     /coverage="93.0"
                     /evalue="1.73e-132"
     Typing          complement(556..2045)
                     /name="MOBP"
                     /typing="relaxase"
                     /tool="MOB-suite"
                     /identity="91.784"
                     /coverage="100.0"
                     /evalue="0.0"
ORIGIN
        1 catcggaaca aagagttggt agctctgaat tccggcaaac gaaccaccgt tggtagcggt
       61 ggtttttttg tttacaggga aaaagattac gcgcagaaag aaaggatctc aaggaaatcc
      121 ttttgctttg gccaatatgc ttcggtaaaa agttaatgcg cagaagattt tgaaaaaata
      181 ttaataacca aaactccaac gcaaataagg aacattcctg caattgcggg ccaatcaagt
      241 ttttgaccgc taaccaacca accagctagg cttattagta caattcccgc accagaccaa
      301 attgcgtaag caataccggt aggtatattt tccaatgttt gggaaagcag ataaaaggca
      361 gcgcaataac ttattgcagt tcctacagac ggccacaggc gtgtaaatcc ttctgaatat
      421 ttcataaagg tggtgcctat gacttcagcc acaatagccc ctcccaggaa aatatatgta
      481 ttcataaaaa tacctcatgt tgaaaaattt aaatatcttt acataacaac taattaatag
      541 aacccggctt atcatagcga aggaccatga tgctgccact gcgatcgttc cagctccagc
      601 gctttctggt gctgcaccgc ccgctcctgc tgccggtgag tttctatcgc gttcagcctt
      661 tcgacaaccg gcgcagctgc tcgctcaaac tctgcacctg cctgctcaag accgtgacgc
      721 gctcgttcag cgccgcgttc tcccgttgaa taagaccaga catcgtccgc cattccgcga
      781 aggcgttctc ccactcgtcc agccttttcg agtagtcctg ctgtagctgc tctaatgcgc
      841 tcagcaactg tttttccagc tccgtcatgt gctatttccc cgccagtatc atccagctcg
      901 agtcctctcc gaactgtccc gcttccgggt tcaccctcac gcagcggcgt ctctgctcgc
      961 cgcaggtcga gagctgtacg ccgctgttcc tctctgacag catggcctgc gtgctcttct
     1021 gctcccggat ggtcgtatag ttctcgagta tctgctgccc ctgccaccac agaatgcccg
     1081 cgctcgacgc tatcagcagc gcggagacca gaacgatggt cagccacgtc tggctgacca
     1141 tgcgcagcat ccctttcgtg cgctggctca tggctgagga cagcttccgg tcgtggtcga
     1201 ggatggcggc gctgattctc ttctcgcttt cgctcagttc cgctctgaca gacttctcgt
     1261 gctcgctgaa tgcggctttc agcatctcgc cggtagtctg ctgctgcgct ttcgatttct
     1321 gctctaagtc cttcgccagc gttaaaagac tgttcataga tggctccctt cagtcggatg
     1381 tttcgccccc cgtccgggtc ggcaatgctg atgctgcttt ttgtggtgcg caccacctca
     1441 aaacctgcgc tttccagcgc ctcagtgacg tcctgacgcg ttttcagctc cccggatgag
     1501 gcaagggcaa gcaggccgct cgtaatcgcc tgggcggctt cctgcttcgc ttccggcagc
     1561 gcggaaggcg agaccagcac ccgccggttc tccggcgcgt tcgggtcatg cagccccagc
     1621 ctgccgttca ctatggtctg ccaggcatcg atgcgcggac ggtcggcgcg gtcgtaatac
     1681 ggctgtagcc gcttgccggt cagaagctcc gtgttcggga tcaggaagtt cagctccagc
     1741 cgccccttgt cccggtgctc aacccacagc acgctgtact ggtctttatc gagtccgggc
     1801 atcagaaccc gctcgaaact cgccatcagc ttttcgcgct ggccgggcgg taaatcctgt
     1861 tcggcaaaag acagaacgcc ggaagtgtac tttttggcgt agggcgaggc gtcgataagc
     1921 tcccggactt catccggctt cccctgcaga acgctggcgc cgtcgcgctg gcgatcttta
     1981 cccagcagat aatcgaccgg cccgccgccg ccgccgcgcc cccgaggatg aaacttaacg
     2041 atcatcatca gcaccctttt ccagtacggc atgccgcaac cgctcgagtc cggcatcgat
     2101 ggccatcagc gcggcgacaa tctgcacgcg gtcgtgtccg cttccaccac cggcgttaac
     2161 ctggcgggca atctggttaa ggttgttccc catgccggca agctgacgaa gcagcgccgg
     2221 cgagatcgac ggaagtttgc cggcgcgtgc gggcttctcg tccaggcacg tctgccgcat
     2281 ccaggccgcg agttgcttac cctcgcagcg ctccagcaga cgccggtgct cgtcctcagt
     2341 cacccacatg gtgagcattt tgctgcgttt gtctgccaat ccggcctcct gataacgccg
     2401 ggacggacgg gaaatctttt cccggtcggc acggtgttgg acaagccgca ggcgcggcag
     2461 tggttttagc gggtttcggg gcgcagccct gaaccagtca cgtagcgcta gcggagtgta
     2521 tactggctaa acatgttatg acggagtggc aatttatgaa agtgcttcat gtgacagggg
     2581 aaaaatgcgg ctgccgggcg taagtgcaaa atgcaggtgg tgatgaaatg acgcctcctc
     2641 gctcactcgg tcgctacgct cctgccgtga gactgcggcg ggcgttacca gctcacagat
     2701 tacgggataa gcaaatgccg ctcgaagcag gaaaggccaa gaaaaggatg cggagttgcc
     2761 gtttttccat aggctccgcc cccctgacga gtatcacgaa aatgacgctc aaatcagcgg
     2821 tggcgaaacc cgatgcggct taaagatacc aggcgtttcc ccctggtggc tccctcgtgc
     2881 tcccccgcat tcctgccttt cggtttaccg gtgtcattcc gctgttatgg ccgcggtttc
     2941 tcattccacg cctgaaactc ggttccgggt aggcagttcg ctccaggatg gactgtatgc
     3001 acgaaccccc cgttcagtcc gactaccacg cccgttccgg taactatcaa cttgagtcca
     3061 acccggaaag acacgacaaa tcgccagtgg cggtagccat tggtaactgg gttcacggag
     3121 cagagattgt agagaatgcc tacagagttc ttgaagtgaa agcctgagtg cggctacact
     3181 gaaaggacag tttaggtatc tgcgctccgt gaaagccagt tac
//
