LOCUS       NZ_LR890683             3514 bp    DNA     circular CON 18-JUN-2023
DEFINITION  Klebsiella pneumoniae strain INF279 isolate INF279 plasmid 5,
            complete sequence.
ACCESSION   NZ_LR890683
VERSION     NZ_LR890683.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA3357273
            Assembly: GCF_904866405.1
KEYWORDS    RefSeq.
SOURCE      Klebsiella pneumoniae
  ORGANISM  Klebsiella pneumoniae
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Klebsiella/Raoultella group; Klebsiella.
REFERENCE   1
  AUTHORS   Hawkey,J.
  TITLE     Direct Submission
  JOURNAL   Submitted (16-OCT-2020) THE UNIVERSITY OF MELBOURNE, 30 Flemington
            Rd, Australia
COMMENT     ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 06/18/2023 15:42:22
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.5
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,573
            CDSs (total)                      :: 5,450
            Genes (coding)                    :: 5,300
            CDSs (with protein)               :: 5,300
            Genes (RNA)                       :: 123
            rRNAs                             :: 9, 8, 8 (5S, 16S, 23S)
            complete rRNAs                    :: 9, 8, 8 (5S, 16S, 23S)
            tRNAs                             :: 86
            ncRNAs                            :: 12
            Pseudo Genes (total)              :: 150
            CDSs (without protein)            :: 150
            Pseudo Genes (ambiguous residues) :: 0 of 150
            Pseudo Genes (frameshifted)       :: 62 of 150
            Pseudo Genes (incomplete)         :: 87 of 150
            Pseudo Genes (internal stop)      :: 29 of 150
            Pseudo Genes (multiple problems)  :: 24 of 150
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            LR890683.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..3514
                     /organism="Klebsiella pneumoniae"
                     /mol_type="genomic DNA"
                     /strain="INF279"
                     /isolate="INF279"
                     /isolation_source="urine"
                     /host="Homo sapiens"
                     /db_xref="taxon:573"
                     /plasmid="5"
                     /geo_loc_name="Australia"
                     /collection_date="2014-01"
     gene            join(3302..3514,1..285)
                     /locus_tag="JMX25_RS27705"
     CDS             join(3302..3514,1..285)
                     /locus_tag="JMX25_RS27705"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="MbeB family mobilization protein"
                     /protein_id="WP_015328238.1"
                     /translation="MSSLLTASRDFEEKSKAQQQLTEERLKAAFSKHENVVKSELNASA
                     KRINDAISAHEQGMNAAMQSNRLSVLRMVGRTWLTITMVSGLLFASLSGVLWYQGNRIA
                     ANLAEIRQQRDTLSKLHMQTWGVTYLENRNGRFLVLPEGMKAETGRTVDNKTRNAVKLV
                     RE"
                     /name="MbeB family mobilization protein"
     gene            292..507
                     /locus_tag="JMX25_RS27710"
     CDS             292..507
                     /locus_tag="JMX25_RS27710"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015328239.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MbeD family mobilization/exclusion protein"
                     /protein_id="WP_015328239.1"
                     /translation="MTELEKQLLSALEQLQQDYSRRLDEWESAFEEWRKMSGLMQRENA
                     ALSERVSGLSRQVQSLSEQLRRLSTG"
                     /name="MbeD family mobilization/exclusion protein"
     gene            complement(921..1112)
                     /locus_tag="JMX25_RS27715"
     CDS             complement(921..1112)
                     /locus_tag="JMX25_RS27715"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_071008427.1"
                     /translation="MLKKNEIILIKSCGNSKTKIFLRGVDEGLMIDASFEDIKFAINNN
                     LHDLLGIQAETTKLKLTK"
                     /name="hypothetical protein"
     gene            2283..2624
                     /locus_tag="JMX25_RS27720"
     CDS             2283..2624
                     /locus_tag="JMX25_RS27720"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006122514.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MobC family plasmid mobilization relaxosome
                     protein"
                     /protein_id="WP_071599364.1"
                     /translation="MADKRNKMLTMWVTEDEHRRLLERCDGKQLAAWMRQTCLDEKPTR
                     AGRLPSISPALLRQLAGMGNNLNQIARKVNAGGAGHDRVQIVAALMAIDAGLERLRHAV
                     LEKGPDDDC"
                     /name="MobC family plasmid mobilization relaxosome protein"
     Typing          2026..2198
                     /name="MOBP"
                     /typing="oriT"
                     /tool="MOB-suite"
                     /identity="89.655"
                     /coverage="100.0"
                     /evalue="9.54e-56"
     Typing          complement(1555..2101)
                     /name="rep_cluster_2335"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="92.909"
                     /coverage="90.0"
                     /evalue="0.0"
     Typing          4..623
                     /name="MOBP"
                     /typing="relaxase"
                     /tool="MOB-suite"
                     /identity="100.0"
                     /coverage="99.0"
                     /evalue="4.14e-127"
     Typing          2615..3513
                     /name="MOBP"
                     /typing="relaxase"
                     /tool="MOB-suite"
                     /identity="100.0"
                     /coverage="99.0"
                     /evalue="0.0"
ORIGIN
        1 cgaatggtcg ggcggacgtg gctgaccatc accatggtgt cagggctgct gttcgccagc
       61 ctgagcgggg tgctgtggta ccaggggaac cggatagcgg cgaacctggc ggaaatcagg
      121 cagcagagag atacgctgtc gaaactgcac atgcagacgt ggggcgtgac ctatctggag
      181 aaccgcaacg gacggtttct ggtgctgccg gaggggatga aagccgaaac gggccggacg
      241 gtggacaaca agacgcggaa cgcggtgaag ctggtacggg agtagagcag aatgacggaa
      301 ctggaaaaac aattgctgag cgcgttagag cagctacagc aggactactc gagaaggctg
      361 gacgagtggg agagcgcctt cgaggaatgg cggaagatgt ctggtcttat gcaacgggag
      421 aacgcggcgc tgagcgagcg cgtgtcgggc ttgagcaggc aggtgcagag tttgagcgag
      481 cagctgcgcc ggttatcgac aggctgaatg agattgagca acagcgatac gggcaaacaa
      541 cggaaaagga accagagaag acagcagatc tggtaccgga acggcaacgc acattatctc
      601 atggtgacag ggagtatgga gactgataaa cgcccgtctc aggtggcctg agcgtgacgg
      661 ggatcatggc cattttctgc gatttcagca cacagagagt cttttttaac cgaaatcacc
      721 ggctatgcag tgatgtgaat aagtgatgca tatgcgtaaa ataaatcagg tgcgtttctg
      781 gtggttttcg gtgtacttgc caccaccttt tgcccgtcag ccatcagaaa cgccctgagt
      841 gcctccggcg cggtgcgggt aagaagacgt tatggtaaat cggtggcttt atttcgatcc
      901 ttcatgcttc aggggctgta tcactttgtt agttttagtt ttgtggtttc ggcttggatt
      961 ccgagaagat cgtggaggtt attgttgata gcaaatttta tatcttcaaa acttgcatca
     1021 atcatgagtc cctcatccac acctcgtaaa aaaatttttg tttttgagtt accacatgat
     1081 tttattaaga taatttcatt tttttttaac atgacattgt cattgtttgt tgtcgtcaga
     1141 tgaatcatta tcgttgtttt tgtgtgtgtt tgttaaggct gctaagatta ttcctaacca
     1201 ctgattttgt acatatcatc aaaaaaataa aaaaactaat gccctgtggt gggtatgtaa
     1261 caaatcacgg ggagcgggtc agaactacgc caaaactttg aatgatcggg tggcaggcta
     1321 aatgaaatct tgagattcat tcagcctcgt cgtaatctct tgctctgtaa acgaaaaaac
     1381 cgccttgcag ggcggttttt cgaaggttaa gtcagttggg gaactgctta accaggtaac
     1441 tggcttcagc agagcgcaga taccaaatac tgtccttcca gtgtagccgt agttaggcca
     1501 ccacttcaag aactctgtag catcacctac attaactcgc tctgctaatc ctgttaccag
     1561 tggctgctgc cagtggcgct ttggcgtgtc tttccgggtt ggactcaaga cgatagttac
     1621 cggataaggc gcagcagtcg gactgaacgg ggggttcgtg catacagtcc agcttggagc
     1681 gaactgcctt cccggaactg agtgtcaggc gtggaatgag ataaacgcgg ccataacagc
     1741 ggaatgacac cggtaaaccg aaaggcagga acaggagagc gcacgaggga gctaccaggg
     1801 ggaaacgcct gggatcttta tagtcctgtc gggtttcgcc gccactgatt tgagcgtcag
     1861 attttgtgat gcttgtcagg ggggcggagc ctatggaaaa acggcttcgc cgcggcctca
     1921 tcgcttccct gttaagtttc ttcctggtat cttcctggaa atttccgccc cgcccgtaag
     1981 ccggcaccgc tcgccgcagc cgaacgaccg agcgcagcga gtcagtgagc gaggaagcgg
     2041 aatatcttct gtatcgcata ttctgcttac gctctgctgc agcatttttc ttctgccgca
     2101 taaggcgctt tcctgattat cgcactcatg ccaacatact aagccagtat acactccgct
     2161 agcgctacgt gactggttca gggctgcgcc ccgaaacccc actgacgcgc ctgcggcttg
     2221 tccaaccccg cgccgaccgg gaaaggcttt cccgtccgtc acggcgttat caggaggcga
     2281 ttctggcaga taaacgcaac aagatgctca cgatgtgggt gacggaagac gaacaccggc
     2341 ggttgcttga gcggtgcgac ggaaaacaac tggcggcgtg gatgcgccag acctgccttg
     2401 atgagaaacc gacacgcgcc ggcaggcttc cctcgatttc gcccgcgctg ctgcgtcagc
     2461 ttgccggcat gggcaataac ctgaaccaga tcgcccggaa agtgaacgcc ggtggtgccg
     2521 gtcatgaccg ggtgcagatc gtggcagcgc tgatggcgat cgatgccggt ctggaacggt
     2581 tgcggcatgc cgtactggaa aaagggccgg acgatgattg ttaaattcca tccccggggt
     2641 cgcggcgggg gcgccggtcc tgtggattat cttctgggta aagaccggca gcgtgaaggt
     2701 gccagcgtcc tgcaggggaa gccggaagaa gtccgggagc tgattgatgc gtcgccgtat
     2761 gtgaaaaaat atacctccgg ggtgctgtca ttcgcggagg cggacctgcc gccgggtcag
     2821 cgtgaaaaac tgatggccag ctttgagcgg gttctgatgc ccggactcga taaagaccag
     2881 tacagcattc tgtgggtgga acacgcagac aagggtcgtc ttgagctgaa ttttctgatc
     2941 cccaataccg aattactgac ggggaaacgc ctccagccgt attacgatcg tgccgaccgg
     3001 ccgcgcatcg atgcgtggca gacagtggtc aacggcaggc tggggctaca tgatccgaac
     3061 gacccggaga accggcgggc gctggtcacg ccttcaggac tgccagaaac gaagcaggaa
     3121 gccgcagaga cgattacacg gggtttgctg atgttagcct catcaggaga gctgaaaacg
     3181 cgtgatgacg tcacaggggc gctcacagcg gccggttttg aggtggtcag aaccacaaaa
     3241 aacagtatca gcattgccga cccggacggg gggcgaaata tccgactgag gggagccatt
     3301 tatgagcagt cttttaacgg cctcgaggga cttcgaggag aaatcgaaag cacagcagca
     3361 gcttaccgaa gagaggctga aagccgcatt cagcaagcac gagaacgttg tcaaatcgga
     3421 actgaacgca agcgcgaaga gaatcaacga cgccatcagc gcccacgaac aggggatgaa
     3481 cgcggcgatg cagtcgaacc ggctgagcgt gctg
//
