LOCUS       NZ_LR890682             5783 bp    DNA     circular CON 18-JUN-2023
DEFINITION  Klebsiella pneumoniae strain INF279 isolate INF279 plasmid 4,
            complete sequence.
ACCESSION   NZ_LR890682
VERSION     NZ_LR890682.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA3357273
            Assembly: GCF_904866405.1
KEYWORDS    RefSeq.
SOURCE      Klebsiella pneumoniae
  ORGANISM  Klebsiella pneumoniae
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Klebsiella/Raoultella group; Klebsiella.
REFERENCE   1
  AUTHORS   Hawkey,J.
  TITLE     Direct Submission
  JOURNAL   Submitted (16-OCT-2020) THE UNIVERSITY OF MELBOURNE, 30 Flemington
            Rd, Australia
COMMENT     ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 06/18/2023 15:42:22
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.5
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,573
            CDSs (total)                      :: 5,450
            Genes (coding)                    :: 5,300
            CDSs (with protein)               :: 5,300
            Genes (RNA)                       :: 123
            rRNAs                             :: 9, 8, 8 (5S, 16S, 23S)
            complete rRNAs                    :: 9, 8, 8 (5S, 16S, 23S)
            tRNAs                             :: 86
            ncRNAs                            :: 12
            Pseudo Genes (total)              :: 150
            CDSs (without protein)            :: 150
            Pseudo Genes (ambiguous residues) :: 0 of 150
            Pseudo Genes (frameshifted)       :: 62 of 150
            Pseudo Genes (incomplete)         :: 87 of 150
            Pseudo Genes (internal stop)      :: 29 of 150
            Pseudo Genes (multiple problems)  :: 24 of 150
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            LR890682.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..5783
                     /organism="Klebsiella pneumoniae"
                     /mol_type="genomic DNA"
                     /strain="INF279"
                     /isolate="INF279"
                     /isolation_source="urine"
                     /host="Homo sapiens"
                     /db_xref="taxon:573"
                     /plasmid="4"
                     /geo_loc_name="Australia"
                     /collection_date="2014-01"
     gene            join(4077..5783,1..>234)
                     /gene="kba"
                     /locus_tag="JMX25_RS27670"
                     /pseudo=""
     CDS             join(4077..5783,1..>234)
                     /gene="kba"
                     /locus_tag="JMX25_RS27670"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010904246.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo=""
                     /codon_start=1
                     /transl_table=11
                     /product="nuclease bacteriocin klebicin B"
                     /name="kba"
     gene            647..910
                     /locus_tag="JMX25_RS27675"
     CDS             647..910
                     /locus_tag="JMX25_RS27675"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015377593.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_064148700.1"
                     /translation="MSNPIEDIIKNESVSDVLRYFGPGRDISKIDRMYVSYKFEVISEG
                     VLLSEYKKLFDNGELKYDSNKNVIKGPNWKEPAFVTQKKYGI"
                     /name="hypothetical protein"
     gene            1092..1349
                     /locus_tag="JMX25_RS27680"
     CDS             1092..1349
                     /locus_tag="JMX25_RS27680"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015366249.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bacteriocin immunity protein"
                     /protein_id="WP_010904244.1"
                     /translation="MANKTLADYTEQEFIEFIEKIKKADFATESEHDEAIYEFSQLTEH
                     PDGWDLIYHPQAGADNSPAGVVKTVKEWRAANGKPGFKKS"
                     /name="bacteriocin immunity protein"
     gene            1457..1612
                     /locus_tag="JMX25_RS27685"
     CDS             1457..1612
                     /locus_tag="JMX25_RS27685"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008323621.1"
                     /GO_component="GO:0019867 - outer membrane [Evidence IEA]"
                     /GO_process="GO:0019835 - cytolysis [Evidence IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="colicin release lysis protein"
                     /protein_id="WP_071561715.1"
                     /translation="MKKLLFLGVVTVSVVLAACQVNNVRDTGGGAVSPSSTVTGVTLDS
                     GTNGNP"
                     /name="colicin release lysis protein"
     gene            complement(1818..1932)
                     /locus_tag="JMX25_RS27690"
                     /pseudo=""
     CDS             complement(1818..1932)
                     /locus_tag="JMX25_RS27690"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005761324.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo=""
                     /codon_start=1
                     /transl_table=11
                     /product="replication initiation protein"
                     /name="replication initiation protein"
     gene            2348..2539
                     /locus_tag="JMX25_RS27695"
     CDS             2348..2539
                     /locus_tag="JMX25_RS27695"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000166328.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Rop family plasmid primer RNA-binding protein"
                     /protein_id="WP_023302508.1"
                     /translation="MTKQQKTALNMAKFIQNQSLLLLEKLNELDLDVEADLCEKLHDDA
                     EHLFRTLSSRLDELQDGN"
                     /name="Rop family plasmid primer RNA-binding protein"
     gene            2539..2961
                     /locus_tag="JMX25_RS27700"
     CDS             2539..2961
                     /locus_tag="JMX25_RS27700"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_005229777.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="WP_064148699.1"
                     /translation="MARVSISEAARLVKVSRPTIYKMINSGKLSYTSVVKHGKAIKVID
                     TSELIRVFGSLDGVIDTVKYDVKSDAESTGINSVGLHDLQHRIALLEAENDGLKGAVKA
                     RDEHIDSLRQAMQLLEHKHEPSSPPHSPWWKFWKKS"
                     /name="helix-turn-helix domain-containing protein"
     Typing          complement(1819..2227)
                     /name="ColRNAI_rep_cluster_1987"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="96.341"
                     /coverage="99.0"
                     /evalue="0.0"
ORIGIN
        1 gttaatgctc ctctgggact tgctgggccg gttcctttgc ctgaaactat tatacatacc
       61 ggtgggcaaa ctacggtccc tcaggggggg actgtgacag tatctcctgt tattggtgaa
      121 gttgattttc gagatcttat ccttgttttc cctcctgagt cagggttaaa gccgttatat
      181 gtgatgccag ttagccctta tggagatgca acagaaaaag gcgagcacag cggaagacct
      241 tataatccgg ataaggcagg tggtcctgta cagaatctta actggcgtag tgcagtcatc
      301 aacaaggccg ggattgataa ggtgaagcta cataccggtc gctttggtga atcagcagca
      361 aacaaagtaa tgatcgaccg tctggagaaa atcctgagcg gtcagttaca ggtaactgat
      421 acggacaagc ggttttacac ccatgaactc agagagctgg aacgttatcg tgctttaggg
      481 gtccctgata atgtgaagcc agatgataaa ggtgttacgt ggaataacac tcatacagca
      541 acgctggaag attataaaat taatgaaaaa actgatccgc tctatacaaa ggatgctgaa
      601 gaggcagagt ataaagcaga gctaaaaaat aaatgagggg gagagaatga gtaatccgat
      661 tgaagacatc attaaaaatg aatcggtaag tgatgtgctt cgctactttg gtcctggtcg
      721 cgacatttca aaaattgacc gtatgtatgt ttcatataag tttgaagtga tctctgaagg
      781 cgttctttta tctgaataca aaaagttatt cgacaatgga gaactaaagt atgactctaa
      841 taaaaatgtt attaaggggc ctaactggaa agagcctgct tttgtaacac aaaaaaaata
      901 cggcatttaa agtgtgcata tgaagccctt tgaaaagagg gctttgatta aagctcacat
      961 atgaaaaggg tttctttttt gagtggtcgt ggtttcgatg atactggcag catgtcaggt
     1021 caacaatatc tggggtaagc tgagtgcatt aaaacctaaa cgccatattg aaatccataa
     1081 tgggaactga aatggctaat aaaactttgg ctgactatac agagcaggaa tttattgagt
     1141 ttatcgaaaa aattaaaaaa gcagactttg ctactgagtc tgagcatgat gaggccattt
     1201 atgagttcag ccagttgact gaacatccag atggttggga tcttatttat catcctcaag
     1261 caggagccga taactctcct gctggtgttg taaaaacagt aaaagagtgg cgagcagcta
     1321 acggtaagcc aggttttaaa aaatcgtgat tgaatgtgcg ggttcaagtg atgaatccgc
     1381 acatttttaa ctctggattt gaataataat tactaggtat ccatttgctt agaataataa
     1441 aaataaaagg tgatatatga aaaaattact tttcctgggg gttgttaccg tttctgtggt
     1501 tctggcggca tgtcaggtca ataatgttcg tgacaccgga ggtggggctg tttcaccttc
     1561 atcgacggtg accggagtca cgcttgatag cggtacgaac ggcaatccgt aaaggatctt
     1621 cttgagatcc catttggatc gtcgtaatct cttgctctgt aaacgaaaaa accgccttgg
     1681 cgggcggttt ttcgaaggtt ccaagagttg gcgctctttg aaccgaggta actggcttat
     1741 gaggagcaca gtaaccaaaa cttgttcttt cagtttagcc ttaaccggcg cataacttca
     1801 agactaactc ctctaaatca gttaccagtg gctgctgcca gtggtgcttt tgcatgtctt
     1861 accgggttgg actcaagatg atagttaccg gatcaaggcg cagcagtcgg actgaacggg
     1921 gggttcgtgc atacagtcca gcttggagcg aactgcctac ccggaactga gtgtcaggcg
     1981 tggaatgaga taaacgcggc cataacagcg gaatgacacc ggtaaaccga atggcaggaa
     2041 caggagagcg cacgagggag ccatcagggg gaaacgcctg gtatctttat agtcctgtcg
     2101 ggtttcgcca ccactgattt gagcgtcaaa ttctgtgatg cttgtcaggg gggcggagcc
     2161 tatggaaaaa cggccgctgt gcggcctctc cttctcccca tcacgcgatc gctcggtttt
     2221 ctcgagcttt tatacgcatg ctcctgccgc tcgccgcagc cgaacggcag gagcgtagcg
     2281 actgagtgag cgaggaagcg gaaaagagaa catccctaca ttgagcactg acgctctgag
     2341 gcctcttatg acgaaacaac agaaaacagc gctgaacatg gctaaattca tccagaatca
     2401 gtctctgctc ctgctggaga agcttaacga gcttgatctc gatgtcgagg ccgacctttg
     2461 tgagaaactc cacgatgatg cggagcatct tttccgtaca ctgtcctcga gactggatga
     2521 attacaggat ggtaactgat ggccagagtg tctattagtg aagcggcacg gcttgttaag
     2581 gttagtcgtc ctacaattta caagatgatt aacagtggga agttaagtta cacctctgtt
     2641 gtaaagcacg ggaaggctat taaagttatt gatacttctg agcttattag agtgtttggt
     2701 tctcttgatg gtgtaatcga tactgtaaaa tatgatgtaa aaagtgacgc agaatctaca
     2761 ggtattaaca gcgttggttt acatgattta caacatagaa tcgctttact tgaagctgaa
     2821 aacgatggtc ttaaaggggc tgttaaggct cgagatgagc atattgattc ccttcgtcag
     2881 gctatgcagc ttctggagca caagcacgaa ccttcttcac caccccattc cccgtggtgg
     2941 aaattctgga aaaaatcctg accccatcat gcttcagttt tcctctccgg ccattccggg
     3001 gagttcctga accttccaaa aaatcgccag atctctgaac gctcctcacc actaaaaata
     3061 cccacacact acgcaaaatt aaaattttgc agattcttta tttaaaacaa ttggttaatg
     3121 aaaaattaat gtgcagtgat gtgttacaaa gtgcagatcc aagtcgtgga cgactctatg
     3181 gcgaatcgtt tacgaattgc ccacgattca tatgtgaatc acgctttatt atcatgttgt
     3241 tatgatgaat cgactcttga ttcaattcat caatttgggc gttttttgtt catggtgact
     3301 cttgattcaa ttcacgattc gaatcgccgg tgaatcgtgt ggtgagtcgt ccggcgactt
     3361 gccataacgt gattgccggc cgtcgacgaa cccgattcct gaacgtgctg aaaaccggtt
     3421 ttccggctgc gccggcaacg cctcacggcc acgcaataaa ttgcgtcccc gttcaccgtt
     3481 ttcggatcag aagaacgccg gaaacaggac ttaccctggc tgaatggcgt gaatttccgc
     3541 gctatgcact tgcgcgcata ctcatgcatg ccgtaaaaac agagcctgcg cgtttctggc
     3601 gggttttcgg gtggtttgtt gcctgtttta ccggtttccc gtcagaaacg ccctgaggcc
     3661 gttttagcgg tgcgtacaat taagggatta tggtaaatgg gggcgctcgg gtggcggaat
     3721 accctctaca ccaagacttt ttgtacaggt ctctgtccgt cagtcacacc ctttttaaga
     3781 gcacatatcg ttaatttttt ttctctgccg agccgcgtcc tgtctgggtt ttgtcatttc
     3841 tattacgctt aacttaatga aaattcaaaa gataattgta tctctccgcg tgttgacaga
     3901 gttctcatgt caggagtagt attcaagtac tgtatataaa cacatgtatt tatatacagt
     3961 acttggtgtg gcagagaact aataacagcc tccggataca ggttcgaagg cgataaaccg
     4021 cacaccagat tctgacaagc aggaaaacga taaaaataac aacaaaggag agagttatgg
     4081 gtggtggatt taactataac ggggaaggtg ctactggcac cggattggat cgtgatccat
     4141 atgttcgcga cagcaatggt aatgctattg gtgttaaatc aggctatcac gcggagtcct
     4201 atgggacctc aagtccagcc ttagggccta atggcgctat tcagattact gctggggtta
     4261 ttgctgtgcc tggagataag ccccgacctg acggtggtag tggtggtggg aatactgtta
     4321 acaccggacc ggcaggacag ctcctggtga tgaataaagg tcagcttgga tactgggaaa
     4381 ctcgttctac gggcgcgggt aacaatgagc ataatacgag tgtatttgtt gccgtaggtc
     4441 cttctgaggc agaaaaaact gcttctgcag agaaggcgtt aaaggaaaaa cagcaggcag
     4501 aagcagcagc aaaagacttt gcggctaaaa ctgctgccgc atcagccacg gcggaaaaag
     4561 aacgccagca ggcaattgct gctgcaactg cagcgggtca gcatcagtca gtttctgatg
     4621 cccgtaatag cctgaataac gcgacgtcag atgtgtctcg tctgaaatca gctgcagaca
     4681 gtgcactgca ggaggcaaag gcaaaacgga aggctgctat tgatgctgta cctgttgcaa
     4741 cccaggcgga aaataaatat caggagctgc agcagaagat taaaggcctg aagctgaaaa
     4801 atggtgagta tggtacggaa aaatgggaaa taattggctc taataaggag catgatcact
     4861 ggggatacag gttttatcca tccggaatta ccaaagctca ggttgatgtg gcgcagagcg
     4921 atgctgtgaa taagcgaaat caggctacca gtcttgccag tcaggcaaca gcagcagaac
     4981 aggacagcct gaaagctaca gctgcctata atgcggcaga aacgcgccgt caggctgctc
     5041 aggcggcgtt aaattctgct gaacaggctg ctgctgctga acgtaagcgg caggaagctg
     5101 aggcggctgc agcagctgct gctgagaaaa aacgtcaggc agacgcagta gcaaaagcag
     5161 cagaggaagc gcgtgcggca gcggaaaaag ccaggctgat gcaggagcgt caggcagcag
     5221 cagataagct gaaatccaca gatattcagt ctgttcgcgg gatcccgtct acggcatcgc
     5281 ctgcagcgtc acccatttcc tgggccgttg catcacttgg tggtatatcg ctggatagtg
     5341 ttactgcagg gaaagcctgg acgcagattg ctgaggtgat ggctaaactg cgaggtattg
     5401 ccggtgcgag tcttgttggt cccgtggtgg caactgctgt agggctgttt tggtcacgtg
     5461 atgttggtat tggcagtgat gtggtgcccg gacgtgacat cagcgggctg atgccgggtg
     5521 atgcactgtc attacctgat ctggccactt tgattaaagc tgctgacagt aaaacgggtg
     5581 tcagtatgcc ggttcgaggc cggattatcg tgcgtgaagg cgattatctg gagtctcagt
     5641 tcgttcgaac acctgttgcc ggtagtgttc cggttgttcg ggctactctg gataaagcta
     5701 ctggttactg gggatatacg ttgccggcga tacagggcgt gcccggacag acaatactgg
     5761 taagtccgtc agatgcgccg ggc
//
