LOCUS       NZ_LR890668             5542 bp    DNA     circular CON 18-JUN-2023
DEFINITION  Klebsiella pneumoniae strain INF065 isolate INF065 plasmid 4,
            complete sequence.
ACCESSION   NZ_LR890668
VERSION     NZ_LR890668.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA3357053
            Assembly: GCF_904866425.1
KEYWORDS    RefSeq.
SOURCE      Klebsiella pneumoniae
  ORGANISM  Klebsiella pneumoniae
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Klebsiella/Raoultella group; Klebsiella.
REFERENCE   1
  AUTHORS   Hawkey,J.
  TITLE     Direct Submission
  JOURNAL   Submitted (16-OCT-2020) THE UNIVERSITY OF MELBOURNE, 30 Flemington
            Rd, Australia
COMMENT     ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 06/18/2023 15:41:54
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.5
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,400
            CDSs (total)                      :: 5,271
            Genes (coding)                    :: 5,155
            CDSs (with protein)               :: 5,155
            Genes (RNA)                       :: 129
            rRNAs                             :: 9, 8, 8 (5S, 16S, 23S)
            complete rRNAs                    :: 9, 8, 8 (5S, 16S, 23S)
            tRNAs                             :: 86
            ncRNAs                            :: 18
            Pseudo Genes (total)              :: 116
            CDSs (without protein)            :: 116
            Pseudo Genes (ambiguous residues) :: 0 of 116
            Pseudo Genes (frameshifted)       :: 50 of 116
            Pseudo Genes (incomplete)         :: 64 of 116
            Pseudo Genes (internal stop)      :: 28 of 116
            Pseudo Genes (multiple problems)  :: 23 of 116
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            LR890668.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..5542
                     /organism="Klebsiella pneumoniae"
                     /mol_type="genomic DNA"
                     /strain="INF065"
                     /isolate="INF065"
                     /isolation_source="urine"
                     /host="Homo sapiens"
                     /db_xref="taxon:573"
                     /plasmid="4"
                     /geo_loc_name="Australia"
                     /collection_date="2013-05"
     gene            complement(join(3854..5542,1..153))
                     /locus_tag="JMX32_RS26910"
     CDS             complement(join(3854..5542,1..153))
                     /locus_tag="JMX32_RS26910"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /GO_component="GO:0016020 - membrane [Evidence IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="type IV secretory system conjugative DNA transfer
                     family protein"
                     /protein_id="WP_117282694.1"
                     /translation="METFNYLINIVFSSLVTIYFFLVPFGGFLSVFLGLIYLTANPEKR
                     QKLQSLGLLSLVIGLINPLGYFWIPLLRSYVYSVDYELLFPLGFLAITLGSAFLGFATW
                     LGWTRYCVPFINKYLHQFTRRTELERNRKTDVREIEKFLPTAKLDYNPDKWLSVDPKKT
                     GLFVGINELGKPIFIPYEKWRSAHVQIVGTSGFGKGVATGILLSQAMRAGETVIVFDPK
                     NDEWAPHVLRQSAEQAEVPFYLVDLESDFGQLDLLAGATAFEVEELLSAGFSLGDSGDI
                     ADHYRLKDRAAIRDISQLVNAGARTVADLAYSELANSYEKECEGAIFKLRELALCRAIS
                     GVGGINMLDAVKNGWCVYIIGSMDNSRLMMAQKMLLVRLQQIVKKRDRITETPRPVCAF
                     LDEVKYLLSRKSLEGLGAARDKGLHFVLTHQSLGDLKDGPRDLNPEAVVGAIVENCSIR
                     IAYRVQNPDTALWLAKMTGEIQVDDETRRVERNAGGAELLSHERTIRQSTRNLIDTNML
                     LNLPGRTAVVFGSGQPQFAHICPILAEKKPLTVYVAPEPVVPLVEPLIPAPAVTTVPVE
                     KNSKPKSQPKKTVPVETRNYEDDDMHDYLQEYNNADF"
                     /name="type IV secretory system conjugative DNA transfer
                     family protein"
     gene            1049..1546
                     /locus_tag="JMX32_RS26915"
     CDS             1049..1546
                     /locus_tag="JMX32_RS26915"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000031238.1"
                     /GO_function="GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="WP_227653717.1"
                     /translation="MTIVISQDNLVISQDNYQGRFMKRVGQIDLDTGEEIGSFVAVIRP
                     KQKSTFQRHFTMNQAALLTIANELNHEQMRVLMALLAELDYENYIQVAQTDISIALKMQ
                     KANVSRAIKNLLEFGIILEGPRIGRSKTYRLNPQFGWKGTVSNHKKALKNGLSVIQGGR
                     AV"
                     /name="helix-turn-helix transcriptional regulator"
     gene            complement(1616..1897)
                     /locus_tag="JMX32_RS26920"
     CDS             complement(1616..1897)
                     /locus_tag="JMX32_RS26920"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_201531893.1"
                     /translation="MKKAIFSLIVTLGLTACAGKPTGDITLLSDPNGGNEVKTYRMGYT
                     CYVHYNPENYRSADVLRGVDTCGEMVGATNSEKFLKYRADVESKLSNS"
                     /name="hypothetical protein"
     gene            complement(1908..2804)
                     /locus_tag="JMX32_RS26925"
     CDS             complement(1908..2804)
                     /locus_tag="JMX32_RS26925"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_117282691.1"
                     /translation="MKSNFLYVALAASIIAGCDQSSPAGAGVSSGESSSQEQTQQVQRN
                     KQISTGQGANNITETAAFPMIQRAIASIYPNLDPGIGANLCSPAREGKTISEINEMVKN
                     EIKPAEYTEYLKNVDGVTNIYLACAVSLTRSSIMPMTGWTFERNFDEEAKLILAMGLAA
                     SRVLSPIAVEISKRPGMDEGKLTTLIQDRFIDTNEDVLNEFIKELQQTRSFSIDGTGAK
                     GIHFTSSDGYDVVGNGNGIIVSSYGSTWYGNGYFEGVFYKVSTIRSNSTNMTKDNTITS
                     GSSISSGESSSADVSTK"
                     /name="hypothetical protein"
     gene            complement(2807..3136)
                     /locus_tag="JMX32_RS26930"
     CDS             complement(2807..3136)
                     /locus_tag="JMX32_RS26930"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_117282692.1"
                     /translation="MPSPLAIIAVIAPSALLGALLFFFVYDEHSTKNDIQRDRHQLETM
                     KFDRDFSNAWNGDSVTPQKENDITSMEEKIKRKEKKAEEEKEERERRMKKIREDVENKI
                     ANSGE"
                     /name="hypothetical protein"
     gene            complement(3136..3867)
                     /gene="mobC"
                     /locus_tag="JMX32_RS26935"
     CDS             complement(3136..3867)
                     /gene="mobC"
                     /locus_tag="JMX32_RS26935"
                     /inference="COORDINATES: protein motif:HMM:NF041423.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MobC family replication-relaxation protein"
                     /protein_id="WP_181964207.1"
                     /translation="MLISDPTERRLASESKRLKILKFLRDEIWSSANVLAAVAGLQSAQ
                     AIHKTLTQLERDGMVRRHLFPIAGRVTKTIWGITPHGLAHAWSDDEQYEDRPRFEPSKL
                     VLARVPHQLDMQEARLKAEASGWGEWVRGERLGFKPAIRPDAMTVSPKGLKVAVELERT
                     IKTKLRYQVIIREHLRAIRTGQWQVVVYITPDGMPLRLKRIFDSIDYVSIDGQHEVLSD
                     KHRNLFRFISLSDWPNMEKSI"
                     /name="mobC"
ORIGIN
        1 cagagactgc aatttttgcc gtttttccgg gttggcagtt aggtaaatta gccccaaaaa
       61 aacgctcaaa aaaccaccaa atgggaccaa aaaaaagtaa atagtgacca atgaagaaaa
      121 aactatattt atcaaatagt taaatgtttc cattgtttaa atcatccaga ggtatcaacg
      181 agaaaaaagg atgccctggc gctgatcatc tgtccagtta aaattcgtac aggaccagaa
      241 agcgggggag cgtagcgagg ggcggcagcc cccactggtg cctatggtgc aagagccagg
      301 cggctcgaag cacaaccggc gttccaccgt cccccggacg gtagccggtt gcatgggggg
      361 gccgaccacc aaaaatggcc ccagccattt tagcgctgcc cacagcgcgg tggtgagttg
      421 ggggcgtagc ccgccgtcag aggagcgcga gcgacgcttg accccgggga ttaaccagac
      481 tcgtccagag gctaggtgaa tttccggggt caagcgtagc gagacggccc cgggtgaatg
      541 gtgctgattg tgagggcctc cccgaacaat cagtgccaga gggcgtagcc ctccagatgt
      601 gagcggcgtc cagccgatcg cgtctggttg tcttttctgg ttgatatcga atgtccaaga
      661 gcatcaacca gaggagttgc cagcaactcc ggcagttaaa agcgctgctc aggtaggtgg
      721 atggctcact gcgtgaacca tccacccctg taaagcgtgc ttttcggtgc agtcgtcaac
      781 gactaaatcg gaacccaccg caaagcggcg gggccccacg atttagccat tgacgaattc
      841 agttgggaga caaaacggca gaggaggaac cgctcgccgc agccgaacga ccgagcgtag
      901 cgagttagtg agcgaggaag cggaatttca cctgtccggg cataggaatc aatacgctct
      961 gatgcctaaa aatggccgtg tgcgtgtgcg cacgtatata agatacagaa ggaggggtcc
     1021 gggaagccgc gccaatgctg gatttttttt gacaatagtt atctctcaag ataacttagt
     1081 tatctctcaa gataactatc agggcagatt catgaaaaga gtggggcaga tcgatctcga
     1141 tacaggtgag gagatcgggt cattcgttgc agtaatcaga cctaagcaaa aatcgacatt
     1201 tcagaggcat tttacgatga atcaagctgc tctcctgacc attgcaaacg agcttaacca
     1261 tgagcaaatg cgcgttttaa tggcactgtt agccgagctc gattacgaaa actacataca
     1321 ggtagcccaa acagatatct caatagcgct caagatgcag aaggccaacg ttagccgagc
     1381 gattaaaaac cttctggagt ttggcatcat ccttgagggg cctaggatcg gacgttcaaa
     1441 aacatatcgg ctaaaccctc agttcggttg gaaagggact gtgagtaatc acaaaaaggc
     1501 cctcaaaaac ggcctgagcg tcattcaggg cggccgggcg gtgtaatcca tggcaggaag
     1561 tcaccagagg gccttaaaac gattctatgg ccctctgagg cgtttttagc cgctatcagg
     1621 agttgctcag tttagattcc acatcggccc tgtatttcag gaatttttcc gagttagtgg
     1681 cgccaaccat ctccccgcag gtgtccacac cgcgcagaac gtccgctgaa cggtagttct
     1741 ccgggttata gtgaacgtaa caggtgtacc ccatgcggta ggttttaacc tcattcccgc
     1801 cgttagggtc agaaagtaac gtaatatccc cggtcggttt tccggcgcag gcagttaaac
     1861 caagagttac aatcagagaa aagatagctt ttttcatttc ctaatcctta ttttgtactt
     1921 acatctgcgg atgagctttc cccgctggaa atagaacttc cagaggtaat tgtgttgtct
     1981 tttgtcatgt ttgttgaatt gcttctgata gtggatactt tataaaaaac accctcaaaa
     2041 tatccgtttc cataccaggt tgaaccataa ctggaaacaa taatcccgtt accatttcca
     2101 accacgtcat aaccatcaga ggaagtaaaa tgaatccctt tagcacccgt tccatctatt
     2161 gagaaagacc tggtttgttg tagttcttta atgaactcat taagtacatc ttcattagta
     2221 tcaataaatc tgtcttgaat taaagttgtt aatttaccct catccattcc gggtcttttt
     2281 gaaatttcaa cagctatcgg tgataaaact ctggaggcag cgaggcccat tgcaagaatg
     2341 agctttgctt cttcatcaaa gtttcgctca aaagtccacc cggtcattgg catgatagac
     2401 gatctagtaa gagaaacggc acaggcgaga tatatattag ttacgccatc aacattcttt
     2461 agatactctg tatattcagc tggctttatc tcatttttta ccatttcgtt gatttcagaa
     2521 attgtttttc cttcccgggc aggagagcac aaattcgcac ctatccccgg atcaagatta
     2581 ggatagatgc tggcgatggc ccgttgaatc atagggaaag cggcggtttc agtgatgttg
     2641 ttagccccct gccccgtaga tatctgtttg tttcgctgaa cctgttgtgt ttgttcctgt
     2701 gagctgctct cccccgagct tacgccagct cctgctggcg aactctgatc gcaacctgca
     2761 ataatagatg cagcaagcgc tacatataaa aagttacttt tcatttttac tccccagagt
     2821 ttgctatttt attctcaaca tcttcacgaa ttttcttcat tctccgttct ctttcttctt
     2881 tttcttcctc tgcctttttc tcctttcttt ttattttttc ttccatgctg gtaatgtcgt
     2941 tttctttttg tggggtgacg ctgtcaccat tccatgcatt tgagaagtca cggtcaaact
     3001 tcatggtttc aagttggtgt ctgtcgcgct gtatatcgtt ttttgtgctg tgttcgtcat
     3061 aaacaaagaa aaacaaaagc gcccccagaa gcgccgaggg ggcaattaca gcaataatcg
     3121 ctaacggact aggcattaaa tagacttctc catgttgggc caatctgaaa ggctaataaa
     3181 cctgaacagg ttccggtgtt tatcagagag aacctcatgc tgaccatcaa tagaaacata
     3241 atcaatagag tcgaaaatac gtttcaggcg caggggcatt ccatcaggag taatatatac
     3301 aacgacctgc cactgacctg ttctgatcgc cctgagatgc tctctgataa tgacctgata
     3361 gcgcagctta gttttgattg tcctctccag ctctaccgcg acctttagtc cttttgggct
     3421 tacagtcatt gcgtcagggc gaatagccgg tttaaaccca aggcgctccc ctctcaccca
     3481 ctcaccccag ccgctagcct cagcctttaa cctagcctct tgcatgtcta actggtgcgg
     3541 aacccgcgcc agaaccagtt ttgatggttc gaatcgtggt cggtcttcgt actgctcatc
     3601 atcactccac gcatgggcta gcccgtgcgg agtgattccc cagattgttt tagttacacg
     3661 gccagctatc gggaagaggt gccgtctgac cattccgtcc ctctccagct gcgtgagcgt
     3721 tttatggatt gcctgagcac tctgtagtcc agctacagca gcgaggacgt tggcagaact
     3781 ccagatttca tccctgagaa atttaagaat tttcagtcgt ttactttcag acgcaaggcg
     3841 gcgctctgtc ggatcagaaa tcagcattgt tatattcctg tagatagtcg tgcatatcat
     3901 cgtcctcata gttccgagtt tctaccggca ctgttttttt aggttgagat ttaggtttcg
     3961 aattcttttc caccggtaca gtggttacag ctggggcagg gattagtggc tcgactagcg
     4021 gcacaaccgg ttcaggtgct acgtaaactg tcagaggttt tttttcggcc agaatcgggc
     4081 aaatatgcgc gaattggggt tgaccagagc caaaaaccac agcggttctg ccaggtagat
     4141 ttaaaagcat gtttgtatcg atcaggttcc gggttgactg cctgatagtg cgttcgtggc
     4201 tgagcagctc agctccgccc gcgttacgct caacccgccg cgtttcatca tcgacctgaa
     4261 tttcccctgt cattttagcc agccagagcg ccgtatcagg gttttgaacc ctgtaggcaa
     4321 tacgaatcga gcagttttca acaatggccc ctacaaccgc ctcggggttc aaatcccgtg
     4381 ggccgtcttt caggtcgccg agggattgat gtgtgaggac gaaatgcaaa cccttatccc
     4441 gggcagcgcc caagccctcc agagattttc tggacagaag gtatttaacc tcatccagaa
     4501 atgcacagac aggccgcggt gtttctgtaa tccggtctcg ttttttaacg atctgttgca
     4561 ggcgcaccaa cagcattttt tgcgccatca tcagacggga attatccatc gagccgataa
     4621 tgtaaacgca ccacccattt ttgacggcat ccagcatatt gataccacca acaccagaga
     4681 tggcgcggca tagcgccagt tcacgcagtt taaaaatcgc cccttcacac tctttttcgt
     4741 atgagttggc caactcgctg taggccaaat cagccacagt tcgtgcgccg gcgttaacca
     4801 gctgtgaaat gtcccggata gcagcgcgat ctttcagtct gtagtggtcg gcaatatccc
     4861 cggaatcccc gagggagaac ccggcagaga gcagttcctc aacctcaaat gcagtagcac
     4921 cggccagcag gtccagctgg ccgaaatcgg actccagatc gaccaggtag aacggcacct
     4981 cagcttgttc ggcggactgc ctcaaaacgt ggggtgccca ctcgtcgttt ttaggatcaa
     5041 aaacaataac agtttcccct gcccgcatag cctgcgacag caaaatccca gttgccaccc
     5101 ctttaccaaa cccggaagta ccaacaatct ggacgtgggc ggaacgccat ttctcgtagg
     5161 ggatgaaaat tggtttaccc agctcattaa tcccgacaaa caggcctgtt tttttaggat
     5221 ctacagagag ccatttatcc gggttgtagt ccaattttgc agtaggtaga aatttttcaa
     5281 tctcccgcac atcggttttg cggttacgct ccagttcagt ccgccgggtg aactggtgca
     5341 aatatttgtt gatgaacggg acacaatacc tagtccatcc cagccatgtt gcgaacccca
     5401 gaaatgcaga tcccagagtt atcgccagaa acccaagggg aaacagcagc tcataatcaa
     5461 cgctgtagac ataagatcgc agcaacggta tccagaaata gcctagcggg ttaattaatc
     5521 cgattaccag agacagcaga cc
//
