LOCUS       NZ_LR890667             5825 bp    DNA     circular CON 18-JUN-2023
DEFINITION  Klebsiella pneumoniae strain INF065 isolate INF065 plasmid 3,
            complete sequence.
ACCESSION   NZ_LR890667
VERSION     NZ_LR890667.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA3357053
            Assembly: GCF_904866425.1
KEYWORDS    RefSeq.
SOURCE      Klebsiella pneumoniae
  ORGANISM  Klebsiella pneumoniae
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Klebsiella/Raoultella group; Klebsiella.
REFERENCE   1
  AUTHORS   Hawkey,J.
  TITLE     Direct Submission
  JOURNAL   Submitted (16-OCT-2020) THE UNIVERSITY OF MELBOURNE, 30 Flemington
            Rd, Australia
COMMENT     ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 06/18/2023 15:41:54
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.5
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,400
            CDSs (total)                      :: 5,271
            Genes (coding)                    :: 5,155
            CDSs (with protein)               :: 5,155
            Genes (RNA)                       :: 129
            rRNAs                             :: 9, 8, 8 (5S, 16S, 23S)
            complete rRNAs                    :: 9, 8, 8 (5S, 16S, 23S)
            tRNAs                             :: 86
            ncRNAs                            :: 18
            Pseudo Genes (total)              :: 116
            CDSs (without protein)            :: 116
            Pseudo Genes (ambiguous residues) :: 0 of 116
            Pseudo Genes (frameshifted)       :: 50 of 116
            Pseudo Genes (incomplete)         :: 64 of 116
            Pseudo Genes (internal stop)      :: 28 of 116
            Pseudo Genes (multiple problems)  :: 23 of 116
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            LR890667.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..5825
                     /organism="Klebsiella pneumoniae"
                     /mol_type="genomic DNA"
                     /strain="INF065"
                     /isolate="INF065"
                     /isolation_source="urine"
                     /host="Homo sapiens"
                     /db_xref="taxon:573"
                     /plasmid="3"
                     /geo_loc_name="Australia"
                     /collection_date="2013-05"
     gene            66..287
                     /locus_tag="JMX32_RS26865"
     CDS             66..287
                     /locus_tag="JMX32_RS26865"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016162091.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_016947202.1"
                     /translation="MQFDTAAELAALQAQTRRIRQVRYRPSRLDRYTGELLSLYQAGAS
                     AAELQRWLRARRIKVVLSTVTRWLEKNG"
                     /name="hypothetical protein"
     gene            280..1167
                     /locus_tag="JMX32_RS26870"
     CDS             280..1167
                     /locus_tag="JMX32_RS26870"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016947203.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="integrase"
                     /protein_id="WP_048290304.1"
                     /translation="MAKFASAARQAAGVIKPLQGNILRSVGTVRNYEQGLTRVAEWMKA
                     NRINHGDLRTLTPAQAITYLEQRGEQVGQKTLDMERQAIQAMMIHVTQTLPAGEHLPVV
                     KSEQAQILSSRAYSPDQVALIAAAQQPANALATAIALAAGLRAHELLTLAPRQERAADP
                     RPAADSKFAGREGVIYTVQGKGGLVREVLLPSRLAERLEHVRLASPVRVTDRGVFYQSQ
                     YAIGGGQRWSNAFSAASMRTLGWSRGAHGVRHSYAQQRMQELQKLGLVRDMALRTVSQE
                     MGHFRPEITETYLR"
                     /name="integrase"
     gene            1164..1862
                     /locus_tag="JMX32_RS26875"
     CDS             1164..1862
                     /locus_tag="JMX32_RS26875"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016947204.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_048290303.1"
                     /translation="MTRTFILLCTGVFAIAYALYELNHYGVYYPDVSNPEAFTGWKAVT
                     ELGPAILATGIAATAFSLWLFILFFRGSESRRIQREISGYQQALREAEEAHRARQNTLI
                     QNHNLETAALRSHYIGAEDVLREAFAQKESLLLQAVQNARKEARKELEEQREALNQRES
                     ILQKKELALETTLEKARKYVAGERHNTELARLEAEKAEERRRNACATAERRRRKLEKLQ
                     ATGGTAGQKH"
                     /name="hypothetical protein"
     gene            complement(1869..2267)
                     /locus_tag="JMX32_RS26880"
     CDS             complement(1869..2267)
                     /locus_tag="JMX32_RS26880"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016162088.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="WP_101979527.1"
                     /translation="MAKVSISEAARLTGKSRTTLHRLIKAGELSTCRGERNAKMLETSE
                     LLRVFGAFASVPVEQRGEQVSGQRDTVTSDHNEQVIHTLKQEIEHLNTLLASKDSHIDS
                     LKQAMLLLENREDQRQNTTRPWWRFWQS"
                     /name="helix-turn-helix domain-containing protein"
     gene            complement(2267..2458)
                     /locus_tag="JMX32_RS26885"
     CDS             complement(2267..2458)
                     /locus_tag="JMX32_RS26885"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000166328.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Rop family plasmid primer RNA-binding protein"
                     /protein_id="WP_101979528.1"
                     /translation="MTKQQKTALNMAKFIQNQSLLLLEKLNELDLDAEADLCETLHDDA
                     EHLFRTLSLRLDALQESD"
                     /name="Rop family plasmid primer RNA-binding protein"
     gene            2870..3001
                     /locus_tag="JMX32_RS27165"
     CDS             2870..3001
                     /locus_tag="JMX32_RS27165"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001333247.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_047741455.1"
                     /translation="MHEPPVQSDCCALSGNYRLESNPERHAKAPLAAATGKQDVREM"
                     /name="hypothetical protein"
     gene            3310..3687
                     /locus_tag="JMX32_RS26890"
     CDS             3310..3687
                     /locus_tag="JMX32_RS26890"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_142368761.1"
                     /translation="MIHNHPTWVIKSMIYRLGILSISLLTVGCVSTSNVLELGRDTYTV
                     SATADGFRDAASARQSAFKTGSEKCNSLGKKFLLTNENVANTRMGIDTTVTLYFRCLDE
                     RDSEYVRPNLQKAPDLLIESK"
                     /name="hypothetical protein"
     gene            3702..4049
                     /locus_tag="JMX32_RS26895"
     CDS             3702..4049
                     /locus_tag="JMX32_RS26895"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_142368762.1"
                     /translation="MIMILWWISSFITHMMKVGNVREYGPTKSHLLLMVTTLPAGVGVF
                     IYPIVEVIWGELSLLKVAGYTFLSLIVGGLLANIIVRGLSATTFGILLVNPLAMICSIA
                     GLIVLAIQHLP"
                     /name="hypothetical protein"
     gene            4303..4803
                     /locus_tag="JMX32_RS26900"
     CDS             4303..4803
                     /locus_tag="JMX32_RS26900"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_200529775.1"
                     /translation="MSAKDDFFKKVTENKERQEATKVQIASDTLRFTNAMHHLIQQIEA
                     WLHKSGIDVVVTENEHHDESIMMYSGGEKLSTYRVKSCHMKNGEKKASLIPIAVYGGQK
                     RGWASLSIDNPNRAPRNQKYLLSLSSDDVWIIKQDIVSPRAQQDNGAELTEESFFQALE
                     SLA"
                     /name="hypothetical protein"
     gene            4861..5262
                     /locus_tag="JMX32_RS26905"
     CDS             4861..5262
                     /locus_tag="JMX32_RS26905"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_159215308.1"
                     /translation="MKKINIIYFLVMISGYAISAPTPEFTAEKICKAAVSTIMGKDPAI
                     IKVKQIHPGEFDLRYNRPSDDSLWGFGCKLVGNNQVMWRSGAEPDNPGYIGRWRTDPAD
                     GKITYSITAGKLTINDSISGERTFTKKEL"
                     /name="hypothetical protein"
     Typing          2507..2979
                     /name="ColRNAI_rep_cluster_1987"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="91.841"
                     /coverage="91.0"
                     /evalue="0.0"
ORIGIN
        1 gcgcatgccg cagtgaccgt taacgtaacg gccactgatg ttcttacacc caatccggag
       61 cacagatgca atttgatacc gctgccgaac tggccgccct gcaggcgcag acccgccgta
      121 tccgccaggt ccgctaccgt ccctcccgcc ttgaccgcta taccggcgaa ctgctgagcc
      181 tgtaccaggc cggggccagt gcagcggagc tgcaacgctg gctccgggcc cggcgaatca
      241 aggtggtgtt gtccacggtt acccgctggc tggaaaaaaa tggctaaatt cgccagcgct
      301 gcccgccagg cggctggcgt gataaaacca ctccagggaa atattctgcg ctctgtcggc
      361 acagtccgga attacgagca gggactgacc cgcgtcgcag agtggatgaa agccaaccgg
      421 attaatcacg gcgatttacg cacactgaca ccggcgcagg ccatcaccta cctggagcag
      481 cgcggggagc aggttggcca gaaaacgctc gatatggaac gccaggccat ccaggccatg
      541 atgatccacg tgacgcagac cctccctgcc ggcgaacacc tgccggtggt gaaatcggag
      601 caggcacaga tcctgagcag ccgggcctac agcccggacc aggtagccct gattgccgca
      661 gcacaacagc ccgccaacgc tctggccacc gcgattgccc tggccgccgg attacgcgcc
      721 catgaactgc tgaccctcgc gccccgccag gagcgagcag cggatccccg tccggcagcg
      781 gacagtaaat ttgccggtcg ggagggtgtg atttacaccg ttcagggcaa aggcggcctg
      841 gtcagggaag ttctgctgcc gtcacgcctg gctgaacgtc tcgagcatgt caggctggcc
      901 agcccggtcc gggtgaccga tcgcggcgtg ttttaccaga gtcagtacgc cattggcgga
      961 ggccagcgct ggtcaaacgc cttcagtgcc gcctccatgc gtaccctggg ctggtcacgg
     1021 ggggcacacg gcgtgcgtca cagctacgcc cagcaacgga tgcaggagct gcaaaaactc
     1081 ggtctggttc gtgatatggc cctgcgcacc gtcagccagg aaatgggcca ttttcgtccg
     1141 gaaatcacgg agacatacct gcgatgacaa gaacatttat tttattgtgt accggtgttt
     1201 tcgccatcgc gtacgccctg tatgagctga atcactatgg cgtttactat ccggacgtca
     1261 gcaatcctga ggcgtttact ggctggaagg cggtcaccga actcggtccc gctatcctgg
     1321 caacggggat cgcagccaca gcgttctcgc tgtggctgtt cattttgttt ttcagaggct
     1381 cagagtcccg ccggatacag cgcgagataa gcggatatca gcaggcactg agggaggcag
     1441 aagaggctca cagagccaga caaaataccc ttattcagaa tcacaacctg gagacagcgg
     1501 ccctgcgaag ccactacatt ggtgctgagg atgtactgcg ggaagcgttt gcgcaaaaag
     1561 aaagcctctt gcttcaggcg gtgcagaatg cccggaaaga agccagaaag gagctggaag
     1621 aacagaggga ggcactgaat cagcgcgaat ccatcctgca gaaaaaggag ctggcgctgg
     1681 aaacaaccct ggagaaggcc cggaaatatg tggccgggga gcggcataac accgagctgg
     1741 cccgtctgga agcagagaaa gcagaggaaa gacggagaaa tgcctgcgcg acggcggaac
     1801 ggcgcagacg gaaactggaa aaactccagg ccactggcgg aacagcaggg caaaaacact
     1861 gaggcatttc aggactgcca gaaacgccac cagggccggg tcgtgttctg ccgctgatct
     1921 tcccggttct ccagcaacaa catcgcctgt ttcagactgt cgatatgtga atcttttgag
     1981 gcaagaagtg tgttcaggtg ttcaatttcc tgtttcagag tatgaatgac ctgttcatta
     2041 tggtcagaag tgactgtgtc acgctgtcca ctgacctgtt cacccctctg ttcaacgggt
     2101 acagacgcaa aggcaccaaa cacccgcaaa agctctgaag tctcgagcat tttcgcattc
     2161 cgttcacccc gacaggtgga cagctcaccg gctttaatta acctgtgcag ggttgtcctg
     2221 ctcttacccg tcagccgtgc agcctcactg atcgacactt tcgccatcag tcactctcct
     2281 gtaatgcatc cagtctcagg gacagtgtac ggaaaagatg ctctgcatca tcgtggagtg
     2341 tctcacaaag gtcagcctcc gcatcgagat caagctcatt aagcttctcc agcaggagca
     2401 gagactgatt ctggatgaat ttagccatat tcagggcagt tttctgttgt ttcgtcataa
     2461 ggggcctcag ggcgtcagtg ctcagtgtaa aaccggtctc ttttccgctt cctcgctcac
     2521 tcagtcgcta cgctcctgcc gttcggctgc ggcgagcgga cgggacacac agaagagtca
     2581 tcgcgataac agggaagaaa agagcctgtg gaaaaagcca cggcgttgcc gtttttccat
     2641 aggctccgcc cccctgacaa gcatcacaga atctgacgct caaatcagcg gtggcgaaac
     2701 ccgacaggac tataaagatc ccaggcgttt ccccctggta gctccctcgt gcgctctcct
     2761 gttcctgcct ttcggtttac cggtgtcatt ccgctgttat ggccgcgttt gtctcattcc
     2821 acgcctgaca ctcagttccg ggtaggcagt tcgctccaag ctggactgta tgcacgaacc
     2881 ccccgttcag tccgactgct gcgccttatc cggtaactat cgtcttgagt ccaacccgga
     2941 aagacatgca aaagcgccac tggcagcagc cactggtaaa caggatgtgc gagagatgta
     3001 gtaagagttc ttgaagtgat ggcctgagtg cggctacact gaaaggacag atttggtgac
     3061 atgtctcgca caagactgtt accgcggtta gaaaatctgc caggattaac taaccttcga
     3121 aaaaccacct gccagggtgg ttttttcgtt tactgagcaa gagattacga tgccaaagaa
     3181 aggatctcaa gaggatcctg ttccatatgc ctacccctga agtgaaacca gcaccactcc
     3241 gcgacaccaa ctatcaaaat aaaattattg aactcattga ttttaataag aaaaaaaaca
     3301 gatataatca tgatccacaa tcacccaact tgggtaataa aatcaatgat ttataggtta
     3361 ggtattttat caatatcgct gcttactgtt ggttgtgttt ctaccagcaa cgttcttgag
     3421 ttaggtaggg atacatatac ggtttcagca actgctgatg gttttagaga tgcggcatca
     3481 gcacgtcaaa gtgcctttaa aacaggttct gagaaatgta atagcctcgg taaaaaattc
     3541 ctgctcacta acgaaaacgt ggctaacaca agaatgggga tagataccac agtaacactc
     3601 tatttccgtt gtcttgacga aagagacagc gagtatgtac gaccaaatct acagaaagca
     3661 ccagatctac tcatcgagag taagtaatta tgaatttcct tatgatcatg atcctatggt
     3721 ggatatcgtc attcatcaca cacatgatga aagttggaaa tgtcagagag tacggtccca
     3781 ctaaaagcca tttgctgtta atggttacaa cgcttcctgc tggcgtaggt gtttttatct
     3841 atccgatagt agaggtgata tggggagagc tgtcgttact gaaagttgct ggttatacct
     3901 ttttatccct cattgttggc ggacttcttg ccaatatcat tgttcgcgga ttatctgcga
     3961 caacattcgg cattttgctc gtaaacccat tagcaatgat atgcagcatt gccggactga
     4021 tagttcttgc tatccaacat ttaccataac gtcttcttac gcgcaccgct aaaacggcct
     4081 cagggcgttt ctgacgggaa accggtaaaa caggcaacaa accacccgaa aacccgccag
     4141 aaacgcgcag gctcagtttt tacgtcatgc atgcctatgc acacaagtga atagatgatg
     4201 ttttcgcgct gaaaacgcac tatacgctct attttccaga ttaatgtata aggttagatg
     4261 ttggggaaaa gagtcatttc tggttcataa aagggtagaa atatgtctgc gaaagatgat
     4321 tttttcaaaa aagtaacaga aaacaaagaa cgacaagagg ccacaaaagt acaaatagca
     4381 tcagatactt tgcgtttcac taacgccatg catcatctga tacaacagat agaagcctgg
     4441 ttgcataagt caggaattga cgtcgtcgtt actgagaatg aacatcatga cgaaagtatc
     4501 atgatgtact ctggtggcga aaagctaagc acgtaccggg tgaaatcatg ccacatgaag
     4561 aatggcgaaa agaaagcatc gctgatcccc atcgctgtgt atggtggtca aaaacgcgga
     4621 tgggcttcac tatcaataga taaccctaac cgggccccaa gaaaccaaaa gtatctgctc
     4681 agtctatcca gtgatgatgt atggataatt aaacaagaca tcgtctcacc acgagcacag
     4741 caagacaacg gagcagaatt aacagaggag tcctttttcc aggctctgga atcgctcgcc
     4801 tgaagctggt ttatcgatat aacgcctaca aacatcccca ttaaatctca aggaaaaaaa
     4861 atgaaaaaaa tcaatataat atattttttg gtaatgatat cagggtacgc gatatcggca
     4921 ccaacacctg aatttactgc agaaaaaata tgcaaggccg cagtaagtac cattatggga
     4981 aaggaccctg ccattataaa agtgaagcaa attcacccag gagaattcga tcttcgctac
     5041 aaccggcctt cagatgattc tctgtggggt tttggttgca aactggttgg caacaaccaa
     5101 gtcatgtggc gctcaggtgc tgagccagat aatccaggat acatcggacg ctggcgcaca
     5161 gatcccgcag acggaaaaat tacgtattca attactgccg ggaaactaac gatcaacgac
     5221 tcaattagtg gagaacgtac cttcacaaag aaagagctct aacagcgctg cgaaaatcgt
     5281 tatcagtttc aacagatacc agtgaccacg gcacactgaa tgacagctct tccaaaccca
     5341 catttcatcg actcatacca ttagcgctca gaaaacggtg accgggcagg caaatttttt
     5401 gtctgtccgg tcaccgttgg cggggtccgg ggcggtcagt cccggcgttc tttattccgc
     5461 caaatcagca cctgcgacac ccgctatgta cgacgcataa atgcgcctgt acatagcggg
     5521 tgtcgctatt gagcggagtc aggcgcaaca tttaaaaaac aacattcaca cgcacgaaaa
     5581 acctggctag tatttagtca aaccatgagg aggcgcactc tgacgcgcac ctgcctaccg
     5641 gcagcaggta aaacagccgg gtccctccgg ggatactgta ccgggcagcc caatccgaga
     5701 atcctgagaa aacagctaaa atctgcgaga ccggcaatca ggtcaggcca ttccctggct
     5761 taagggacgt tatcagccgc gagcagtccg ggctgaacca cgagaggttc gaacgagggc
     5821 gatcg
//
