LOCUS       NZ_LR890660             1934 bp    DNA     circular CON 17-JUN-2024
DEFINITION  Serratia marcescens strain MSB1_9C isolate MSB1_9C plasmid 4,
            complete sequence.
ACCESSION   NZ_LR890660
VERSION     NZ_LR890660.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA3357389
            Assembly: GCF_904866365.1
KEYWORDS    RefSeq.
SOURCE      Serratia marcescens
  ORGANISM  Serratia marcescens
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Yersiniaceae; Serratia.
REFERENCE   1
  AUTHORS   Hawkey,J.
  TITLE     Direct Submission
  JOURNAL   Submitted (16-OCT-2020) THE UNIVERSITY OF MELBOURNE, 30 Flemington
            Rd, Australia
COMMENT     ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_904866365.1-RS_2024_06_17
            Annotation Date                   :: 06/17/2024 11:02:54
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,702
            CDSs (total)                      :: 5,574
            Genes (coding)                    :: 5,438
            CDSs (with protein)               :: 5,438
            Genes (RNA)                       :: 128
            rRNAs                             :: 8, 7, 7 (5S, 16S, 23S)
            complete rRNAs                    :: 8, 7, 7 (5S, 16S, 23S)
            tRNAs                             :: 91
            ncRNAs                            :: 15
            Pseudo Genes (total)              :: 137
            CDSs (without protein)            :: 136
            Pseudo Genes (ambiguous residues) :: 0 of 137
            Pseudo Genes (frameshifted)       :: 45 of 137
            Pseudo Genes (incomplete)         :: 102 of 137
            Pseudo Genes (internal stop)      :: 21 of 137
            Pseudo Genes (multiple problems)  :: 25 of 137
            CRISPR Arrays                     :: 3
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            LR890660.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1934
                     /organism="Serratia marcescens"
                     /mol_type="genomic DNA"
                     /strain="MSB1_9C"
                     /isolate="MSB1_9C"
                     /isolation_source="rectal swab"
                     /host="Homo sapiens"
                     /db_xref="taxon:615"
                     /plasmid="4"
                     /geo_loc_name="Australia"
                     /collection_date="2014-01"
     gene            complement(join(1810..1934,1..592))
                     /locus_tag="JMX15_RS28405"
     CDS             complement(join(1810..1934,1..592))
                     /locus_tag="JMX15_RS28405"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="protein rep"
                     /protein_id="WP_064761962.1"
                     /translation="MWQARFYQSLPRIVADYPDARWMFLTLTVRNCAIGELGETLNRMN
                     MAFQRLKDRKEFRPVQGWIRTTEVTRGSDGSAHPHFHTLMMVPPSMFTRDYVKHDRWVE
                     LWRECLRVNYDPNVDVRAVKPRKPKDGESLASATAELVRGAVAETLKYSTKPADMVADP
                     EWFLELTKQTHKRRFVATGGALKDILKLDQETDADMVIGDDIPEGDDDGSRIAFEWKTE
                     SKKYRRSPSKDKAESD"
                     /name="protein rep"
     gene            complement(849..1151)
                     /locus_tag="JMX15_RS28410"
     CDS             complement(849..1151)
                     /locus_tag="JMX15_RS28410"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_023150476.1"
                     /translation="MAGSIRARSLYLYLRDNSGDKKWHQALRTKASGLICVVEGFGSIL
                     LGVVALKATPATTAIVRGCDHLQKFDSKRQPTGDTAMITRQMSHRPAWDGVHAKP"
                     /name="hypothetical protein"
ORIGIN
        1 cggcatcagt ttcctgatcg agtttcagta tgtctttgag tgcgccaccg gtagccacaa
       61 atcggcgctt atgtgtctgc ttagtcaatt cgaggaacca ttcaggatca gcaaccatgt
      121 cagccggctt cgtggaatat ttcagggttt cagccactgc gccccgtaca agttccgcag
      181 ttgcagaagc caatgattct ccgtccttag gcttgcgggg ttttactgct cgaacatcaa
      241 cattcggatc gtaattcaca cgcaaacact ctcgccaaag ctctacccag cggtcatgtt
      301 taacgtaatc tcgcgtgaac attgagggag gaaccatcat cagagtgtga aagtgcgggt
      361 gcgcactacc gtcacttcca cgtgtaactt ccgtggtgcg gatccagccc tgaacaggtc
      421 gaaactcttt gcgatcctta agtcgctgga aggccatgtt cattcggtta agtgtctcac
      481 ccaattcccc gatcgcgcag tttcgcactg tgagggtcag gaacatccag cgtgcatctg
      541 gataatccgc aacaatacgc ggcagggact gataaaaacg ggcttgccac atcagggatc
      601 gcctccactg gcagacagga cagtgccgga cacgacagaa atgcgcctca cgtagcctaa
      661 ggcgagtttc tccagtttct ttgagggtag accaaccaaa cctcagtaaa ccgccacagg
      721 aagccatacg cgccccgtag cgctcatatt cggctgcgag aaggtaaatc ccacctacgt
      781 cgtcagaaac gcttttgtga gcgtcccagg gcgcgtctga gggggagtaa tccgtgaggt
      841 tctggagttt agggttttgc atgcacaccg tcccatgctg ggcgatggct catttgacgt
      901 gttatcattg ccgtatcacc tgttggttgt cgcttcgaat cgaatttctg caggtggtca
      961 cacccccgaa cgatggccgt cgttgcgggg gtcgctttta aggcgaccac tcccaacaga
     1021 atacttccaa aaccttctac aacgcaaata agcccagaag ccttggtacg caaggcttga
     1081 tgccattttt tatcgccaga gttatccctt aagtataaat acaaggatcg cgcgcggatc
     1141 gaaccagcca ttcaacgccc acccgccacc aaaaactgcc acaacgccag gagcgaaaca
     1201 gcaacgctca acgcactatc aacatgatta agaacctcaa aaaacataac aacctcactc
     1261 gaatggaatt gggtaaatct atttagtctg tgatttgcga acccatactt tttcgcatca
     1321 cgacagaacc aactccattc gttctggttg tatccggtac cagacaatta aaaaccgtct
     1381 tccaggtggt tggcctcact tcgtgaatcc aaccacctca gccaattttt caatcagcaa
     1441 tgtcgtcaat cactaaatcg gaacccactg gcaagccagc gggaccccac gatttagagt
     1501 ttgacgattt cggaaacagc gagcgctggc agattttaat ctgactgcgt gaggtgttgg
     1561 cagggtgtcg gggcgcagcc ctgacgaatc gtttttggca ccgacatcgt gatggcggtg
     1621 taccaaaaac acatcttgtc ccaactgagt tcggaaaccg aactcagtaa ttgagtgacg
     1681 tcactttgcg gcgttagccc tatcctgcat cggagtagaa ccaataggac aagatgtgtt
     1741 tttggagtac cgccgacaag cggcgtcctc tcaaaaacgt cgtggtcagg gctgcgcccc
     1801 gacaccctgt cagtctgatt cagctttatc ttttgacggt gagcgacggt actttttgga
     1861 ttcggttttc cactcaaaag caatgcgtga accatcatca tcgccttcgg gaatatcatc
     1921 cccgattacc atat
//
