LOCUS       NZ_LR890626             5251 bp    DNA     circular CON 18-JUN-2023
DEFINITION  Klebsiella pneumoniae strain INF242 isolate INF242 plasmid 3,
            complete sequence.
ACCESSION   NZ_LR890626
VERSION     NZ_LR890626.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA3357211
            Assembly: GCF_904866375.1
KEYWORDS    RefSeq.
SOURCE      Klebsiella pneumoniae
  ORGANISM  Klebsiella pneumoniae
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Klebsiella/Raoultella group; Klebsiella.
REFERENCE   1
  AUTHORS   Hawkey,J.
  TITLE     Direct Submission
  JOURNAL   Submitted (16-OCT-2020) THE UNIVERSITY OF MELBOURNE, 30 Flemington
            Rd, Australia
COMMENT     ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 06/18/2023 13:41:05
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.5
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,280
            CDSs (total)                      :: 5,160
            Genes (coding)                    :: 5,036
            CDSs (with protein)               :: 5,036
            Genes (RNA)                       :: 120
            rRNAs                             :: 9, 8, 8 (5S, 16S, 23S)
            complete rRNAs                    :: 9, 8, 8 (5S, 16S, 23S)
            tRNAs                             :: 86
            ncRNAs                            :: 9
            Pseudo Genes (total)              :: 124
            CDSs (without protein)            :: 124
            Pseudo Genes (ambiguous residues) :: 0 of 124
            Pseudo Genes (frameshifted)       :: 58 of 124
            Pseudo Genes (incomplete)         :: 72 of 124
            Pseudo Genes (internal stop)      :: 24 of 124
            Pseudo Genes (multiple problems)  :: 28 of 124
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            LR890626.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..5251
                     /organism="Klebsiella pneumoniae"
                     /mol_type="genomic DNA"
                     /strain="INF242"
                     /isolate="INF242"
                     /isolation_source="urine"
                     /host="Homo sapiens"
                     /db_xref="taxon:573"
                     /plasmid="3"
                     /geo_loc_name="Australia"
                     /collection_date="2013-11"
     gene            complement(join(5013..5251,1..1117))
                     /locus_tag="JMX20_RS26330"
     CDS             complement(join(5013..5251,1..1117))
                     /locus_tag="JMX20_RS26330"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000498067.1"
                     /GO_function="GO:0005524 - ATP binding [Evidence IEA];
                     GO:0016887 - ATP hydrolysis activity [Evidence IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="WP_046380597.1"
                     /translation="MFVYLTIENFRSVKEKSTLNLSASGSSNHLTTHIYKNDGMNVGTL
                     MSAGIYGANASGKSNVLMAFEAIKFIATDSGDLKEGKRIPCYEPYALSSATNEAPVKFE
                     AEFYSVEGNRFSYEVAFIKNRILFESLDYYPSRVKANLFTRDESDTWETIKFGGHYKGG
                     IKKIPFFPNNSYLAKAGNNAASPDIIKEAYNFFRKGIRHIGLNEKIRISSFGEREDVVN
                     ETAKVLCMVDTGVSGISVREVEAEIPIKMDEEIPQEIKEIIEEDYKYRYMFSHPTDEGG
                     SVSFPMGRESEGTQKLFEIIPLIRSAFNDSMVVIVDELDNSLHPHIADLIVKLFNDPDV
                     NKKGSQLVFSTHNMQLMAPEKMRRDQIWFCEKNKGASSLYSLDDFDKKKIKTTTPYAAW
                     YDEGRFGGVPDINYLKVASFISGDISLVMPDIDVKELSDGFFEEFDGDLSDE"
                     /name="ATP-binding protein"
     gene            complement(1750..1962)
                     /locus_tag="JMX20_RS26335"
     CDS             complement(1750..1962)
                     /locus_tag="JMX20_RS26335"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000137423.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MbeD family mobilization/exclusion protein"
                     /protein_id="WP_000137423.1"
                     /translation="MTELEKQLLTALEQLHQDYSQRLDEWESAFAEWQKMSGLMQRENA
                     ALNERVTRLSQQVANLSRQLQRLSQ"
                     /name="MbeD family mobilization/exclusion protein"
     gene            complement(1966..2451)
                     /locus_tag="JMX20_RS26340"
     CDS             complement(1966..2451)
                     /locus_tag="JMX20_RS26340"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001749519.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MbeB family mobilization protein"
                     /protein_id="WP_013631087.1"
                     /translation="MSSLLALAKDLEQQSKAQQQSTGEMLKAAFSEHEQSVKAELSASA
                     KRISDAISAHEQGMTAAMQSNRLSVLRMVGRTWLTITLVSVLLIATSGSILWWQGQQIT
                     GNYQTIRAQERTQAMLSEKNHGVQLSLCGEKKLSCVKVNPKAGAYGEEGNWMVLERK"
                     /name="MbeB family mobilization protein"
     gene            complement(<2489..2920)
                     /locus_tag="JMX20_RS26625"
                     /pseudo=""
     CDS             complement(<2489..2920)
                     /locus_tag="JMX20_RS26625"
                     /inference="COORDINATES: protein motif:HMM:NF015397.2"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo=""
                     /codon_start=1
                     /transl_table=11
                     /product="relaxase/mobilization nuclease domain-containing
                     protein"
                     /name="relaxase/mobilization nuclease domain-containing
                     protein"
     gene            complement(3129..3449)
                     /locus_tag="JMX20_RS26350"
     CDS             complement(3129..3449)
                     /locus_tag="JMX20_RS26350"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000957083.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MobC family plasmid mobilization relaxosome
                     protein"
                     /protein_id="WP_014386475.1"
                     /translation="MLTMWVTEDEHRRLLERCDGKQLAAWMRQTCLDEKPARAGRLPSI
                     SPALLRQLAGMGNNLNQIARKVNAGGAGHDRVQIVAALMAIDAGLERLRHAVLEKGGDD
                     DR"
                     /name="MobC family plasmid mobilization relaxosome protein"
     gene            4086..4247
                     /locus_tag="JMX20_RS26355"
     CDS             4086..4247
                     /locus_tag="JMX20_RS26355"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001318243.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_023144844.1"
                     /translation="MHEPPVQSDRCAFSGNYHLESNPERHGSSPLAAAIGNGLEEVSLE
                     VLRQLRLN"
                     /name="hypothetical protein"
     gene            complement(4400..5020)
                     /locus_tag="JMX20_RS26360"
     CDS             complement(4400..5020)
                     /locus_tag="JMX20_RS26360"
                     /inference="COORDINATES: protein motif:HMM:NF025084.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RloB family protein"
                     /protein_id="WP_023312615.1"
                     /translation="MSKKHGNNKKVPQVMYIYCEGEKTEPLYLEAYISDRSKRTLSVFK
                     IPKTRKNTPEQLVDEAIKKKNSSSSAEGDVFWVVYDQEHLTPSSISCHQKAWNKANRHG
                     INIAISCVCFELWLLLHFGFTTKDFSSYDNLMSSSPLKKLITNYDKGSKLTYLAIRERI
                     GTAKDNARKLDIYAKTNYKNTHEPYLFPCYTSFHELLKAIDDF"
                     /name="RloB family protein"
     Typing          complement(3564..3736)
                     /name="MOBP"
                     /typing="oriT"
                     /tool="MOB-suite"
                     /identity="84.659"
                     /coverage="100.0"
                     /evalue="9.74e-41"
     Typing          3683..4196
                     /name="ColRNAI_rep_cluster_1987"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="93.617"
                     /coverage="99.0"
                     /evalue="0.0"
     Typing          complement(1635..3139)
                     /name="MOBP"
                     /typing="relaxase"
                     /tool="MOB-suite"
                     /identity="96.215"
                     /coverage="100.0"
                     /evalue="0.0"
ORIGIN
        1 ttttttcaca aaaccatatc tgatctcttc tcattttctc tggagccatt aactgcatat
       61 tatgggttga gaatacaagt tgtgagcctt ttttattgac atcaggatca ttaaataact
      121 taacaatcaa gtcagcaata tgcgggtgca agctattatc taactcatca acaattacaa
      181 ccatactatc attaaacgca gatctaatta gaggtatgat ttcaaataat ttttgggtgc
      241 cttcagactc tctccccata gggaaagaaa cactcccccc ttcatcagta ggatgagaga
      301 acatataacg atatttataa tcttcttcaa ttatctcctt tatttcttga gggatttcct
      361 catccatttt tattggtatt tccgcctcaa cctcccgtac agatataccg gaaacaccag
      421 tgtcaaccat gcataaaacc ttggccgttt catttacgac gtcctccctc tccccaaaag
      481 aagatattct tatcttttca tttaaaccta tatgtctaat tccctttcta aaaaagttat
      541 aagcttcttt aattatgtct ggtgatgcgg cattattacc tgctttcgct aagtatgaat
      601 tattagggaa gaatggtatt tttttaatac ctcctttata atgcccacca aacttgattg
      661 tttcccaggt gtcgctctca tctctagtaa ataaatttgc tttaacccta gatggataat
      721 agtctaatga ttcaaataaa atccgatttt taataaaagc aacttcataa ctgaaccgat
      781 tcccctcaac agaataaaat tcagcctcaa actttacagg agcctcattc gtagccgaag
      841 aaagagcata tggctcatag cagggaatcc gtttaccttc tttcaaatca ccgctatctg
      901 ttgcgataaa ttttatagct tcaaaagcca tgagaacgtt agatttacca gacgcattag
      961 caccataaat cccagcactc atgagcgttc caacattcat tccatcattt ttatagatat
     1021 gagttgttaa atggttacta gaaccggatg cgctcaagtt taatgtcgat ttttccttaa
     1081 ccgacctaaa attttcaata gtcaaataaa caaacatgca tacctcctaa cggggatttt
     1141 tcgccaaaaa agcgaaaaat caatcatagg aaagatatcc tatatgtttt aattttggaa
     1201 caacatcttc cttaaaaaac gttgtgctat ttataattac acgctattta ccataacatc
     1261 tgttgcccgc accgctccgg acaggttcgc cacaaacggg gcggcagtca ggtaaaaccg
     1321 gcaacaaacc acccgataca ccgccccgtt cgtgacagat aaattttacc cggctgcatg
     1381 gtcatgcagc cagatgcata cggtctgatt tcaggccaga atccggatga acgccttaaa
     1441 aacaggaaaa tgcttctcca gccagtccca gatctccagc gccatgtaca ggcaattcag
     1501 caccgtctca atcacgttaa acagtctcat aatccctccg ttgtatacgc tgtgatggaa
     1561 acatcacgac cgtatttagc gggaaattta tgagcccttc ttcttggggt ttgtcactgg
     1621 atgcgcgcag tcagcccagc gtcggaccgt catagctccg ctgccgggaa cgggtttccg
     1681 ccagctcttt ttcatgctgt ttctgctcgt atgcccgttc ggcggccacc gccatttcat
     1741 gccgctgcac tactggctca aacgctgtaa ctgcctgctc aagttcgcca cctgctgact
     1801 caagcgcgtg acgcgctcgt tcagcgccgc gttctcccgt tgcataagac cagacatctt
     1861 ctgccattcc gcgaaggcgc tctcccactc gtccagcctt tgcgagtagt cctgatgtag
     1921 ctgctctaat gcggtcagca actgtttttc cagttccgtc atgggctatt tcctctccag
     1981 taccatccag ttcccttcct ccccgtaagc tcccgctttc gggttcactt tgacgcagga
     2041 cagtttcttc tccccgcaga gcgacagctg cacgccgtgg ttcttctccg acagcatggc
     2101 ctgcgtccgc tcctgcgccc ggatagtctg gtaattcccg gtgatctgct gcccctgcca
     2161 ccacagaatg ctcccgctcg tggcgatcag cagtaccgag accagggtga tggtcagcca
     2221 cgtccggccg accatacgca gcacgctcag ccggttcgac tgcatcgccg cggtcatacc
     2281 ctgctcgtgg gcgctgatgg cgtcgctgat tctcttcgcg cttgcgctca gttccgcttt
     2341 tacagactgc tcgtgctcgc tgaatgcggc tttcagcatc tcgccggtac tctgctgctg
     2401 cgctttcgat tgctgctcca agtccttcgc cagcgctaaa agactgctca taaatggctc
     2461 ccttcagtcg gatgtttcgc cccccgtccg ggtcggcaat gctgatactg ttttttgtgg
     2521 tgcggaccac ctcaaaacct gccgctgtga gcgcccctgt gacgtcctcg cgcgttttga
     2581 gctccccgga tgaggctaag gccagcaacc cacgtgtaat cgcctgagcg gcttccagct
     2641 tcgtttccgg cagtgcggac ggcgtgacca gtaaccgtcg gttctccggg gcgtttggat
     2701 catgcagccc cagcctgccg ttcaccacgg tctgccaggc atcgatgcgc ggccggtcgg
     2761 cgcgatcgta gtacggctgc aggcgtttcc cggtcagcag ttcagtgttg gggatcagga
     2821 aattcagctc cagccgcccc ttgtcggtgt gctccaccca cagaatgctg tactggtctt
     2881 tatcgagccc gggcatcaga acccgctcaa agctggccat gatctgctcc cgctgcccgg
     2941 gcggcagttc agcctccgcg aacgacagca cgccggaggt gtactttttc gcatacggcg
     3001 aggcatcgat aagctcccgg acttcctccg gttttccctg cagcacggtc gccccctcgc
     3061 gctgccggtc ttttcccagc aggtaatcca ccggaccggc accaccaccg cgcccccggg
     3121 ggtgaaattt aacgatcatc atccccccct ttttccagca ccgcatgccg cagccgctcc
     3181 agtcccgcgt cgattgccat cagtgcggcc acaatctgca cccggtcatg accggcacca
     3241 ccggcattca ctttccgggc gatctggttc aggttgttcc ccataccggc aagctggcgc
     3301 agcagcgccg gcgatatcga cggcagtctg ccggcacgcg ccggcttctc atcgaggcag
     3361 gtctgacgca tccacgccgc cagctgcttg ccgtcgcacc gctcgagcag ccgccggtgt
     3421 tcgtcttccg tcacccacat cgtgagcatc ttgttgcgtt tgtctgccag agtagcctcc
     3481 tgataacacc gggacgggcg ggaaatgttt cccggtcggc acggtgttgg acaagccgca
     3541 ggcgcgtcag tcgcttttag cgggtttcgg ggcgcagccc tgaaccagtc acgtagcgct
     3601 agcggagtgt atactggctt attatgttgg catgagtgcg gtaatcagga aagtgcttca
     3661 tgtgacagag gaaaatgcag ctgcgggcgt aaggcagaaa atggaagttc agaggatatg
     3721 acgcctcctc gctcactcag tcgctgccgc tcctgccgtt cggctgcggc gggcgttacc
     3781 tgcacacgga gaagagcgaa ggcatatggc atgacaaacg gggcagaaaa aggatgcgcc
     3841 gctgccgttt ttccataggc tccgcccccc tgacaagcat cacgaaatct gacgctcaaa
     3901 tcagtggtgg cgaaacccga caggactata aagataccag gcgtttcccc ctggtggctc
     3961 cctcgtgcgc tctcctgttc ctgcctttcg gtttaccggt gtcattccgc tgttatggcc
     4021 gcgtttgtct cattccacgc ctgacactca gttccgggta ggcagttcgc tccaagctgg
     4081 actgtatgca cgaacccccc gttcagtccg accgctgcgc cttctccggt aactatcatc
     4141 ttgagtccaa cccggaaaga cacggttcat cgccactggc agcagccatt ggtaacggat
     4201 tagaggaagt gagtcttgaa gttctgcgcc agttaaggct aaactgaaag gacaattttt
     4261 ggtgactgcg ctccctctaa gccagttacc cggtacataa gttggtagct catgtacctt
     4321 ccaaaaacca ccgttggtag cggtggtttt tatttttcat agattacagc ctgtaataag
     4381 ccatggtcaa tggattactt caaaagtcgt caatcgcctt aagtagctca tggaatgatg
     4441 tataacatgg aaatagataa ggttcgtgcg tgtttttata attagtttta gcgtaaatat
     4501 ctagctttct tgcgttatct ttcgcagtac caatcctctc tcttatagca aggtaagtta
     4561 gtttactacc tttatcatag ttagttatta atttttttag cggggagcta gacatcaaat
     4621 tatcatacga cgaaaaatct ttggttgtga agccgaaatg caacaataac cataattcaa
     4681 aacaaacaca ggatattgct atatttatcc catgcctatt agctttattc catgcctttt
     4741 gatgacatga aatagacgaa ggcgtcagat gctcttgatc ataaacaacc caaaagacgt
     4801 caccttctgc ggaagatgat gaattctttt tctttatcgc ctcatccacc aactgctcag
     4861 gtgtattttt tcttgtttta ggtattttaa atacacttaa agttctttta gatctgtctg
     4921 aaatataagc ctcaaggtat aatggttcgg ttttctcacc ctcacagtat atatacatta
     4981 cttgtgggac tttcttatta tttccatgtt ttttactcat cagaaagatc cccgtcaaac
     5041 tcttcaaaaa aaccatcaga caattctttg acgtcaatat ccggcattac caaggatata
     5101 tcaccagata taaatgaggc tacctttaag tagtttatgt cgggaacccc accaaaccta
     5161 ccctcatcat accaagctgc gtaaggtgtt gttgttttta tctttttctt atcaaaatca
     5221 tctaagctat aaagagacga cgcaccttta t
//
