LOCUS       NZ_LR890602             6615 bp    DNA     circular CON 18-JUN-2023
DEFINITION  Klebsiella pneumoniae strain INF122 isolate INF122 plasmid 3,
            complete sequence.
ACCESSION   NZ_LR890602
VERSION     NZ_LR890602.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA3357009
            Assembly: GCF_904866235.1
KEYWORDS    RefSeq.
SOURCE      Klebsiella pneumoniae
  ORGANISM  Klebsiella pneumoniae
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Klebsiella/Raoultella group; Klebsiella.
REFERENCE   1
  AUTHORS   Hawkey,J.
  TITLE     Direct Submission
  JOURNAL   Submitted (16-OCT-2020) THE UNIVERSITY OF MELBOURNE, 30 Flemington
            Rd, Australia
COMMENT     ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 06/18/2023 11:19:07
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.5
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,322
            CDSs (total)                      :: 5,200
            Genes (coding)                    :: 5,093
            CDSs (with protein)               :: 5,093
            Genes (RNA)                       :: 122
            rRNAs                             :: 9, 8, 8 (5S, 16S, 23S)
            complete rRNAs                    :: 9, 8, 8 (5S, 16S, 23S)
            tRNAs                             :: 86
            ncRNAs                            :: 11
            Pseudo Genes (total)              :: 107
            CDSs (without protein)            :: 107
            Pseudo Genes (ambiguous residues) :: 0 of 107
            Pseudo Genes (frameshifted)       :: 50 of 107
            Pseudo Genes (incomplete)         :: 50 of 107
            Pseudo Genes (internal stop)      :: 26 of 107
            Pseudo Genes (multiple problems)  :: 17 of 107
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            LR890602.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..6615
                     /organism="Klebsiella pneumoniae"
                     /mol_type="genomic DNA"
                     /strain="INF122"
                     /isolate="INF122"
                     /isolation_source="urine"
                     /host="Homo sapiens"
                     /db_xref="taxon:573"
                     /plasmid="3"
                     /geo_loc_name="Australia"
                     /collection_date="2013-07"
     gene            complement(join(6420..6615,1..503))
                     /locus_tag="JMW81_RS26500"
     CDS             complement(join(6420..6615,1..503))
                     /locus_tag="JMW81_RS26500"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016162089.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_071080961.1"
                     /translation="MTRTFILLCTGVFAIAYALYELKHMGVYYPDASNPQLFTGWKAVT
                     ELGPAILATGIAATAFSLWLFILFFRSSESRRIQREISGYQQALREAEEAHTARQNALI
                     RDHNMKTETLHSHYCDAANVLREEYAKREKRWRQALQNAREEARQELEEQTEALNQRAS
                     GLLVQEQTLKARMEEVRKYVAGERHNAMRARLEAEEAEKRRQNASATAERRRRKLEKLQ
                     ATDGTAGQKH"
                     /name="hypothetical protein"
     gene            complement(500..1387)
                     /locus_tag="JMW81_RS26505"
     CDS             complement(500..1387)
                     /locus_tag="JMW81_RS26505"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016947203.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="integrase"
                     /protein_id="WP_099755385.1"
                     /translation="MAKFASAARQAAGVIKPLQGNILRSVGTVRNYEQGLTRVAEWMKE
                     NRLNHGDLRTLTPAQAITYLEQRGEQVGQKTLDMERQAIQAMMIHVTQTLPAGEHLPVV
                     KSEQAQILSSRAYSPDQVALIAAAQQPANALATAIALAAGLRAHELLTLAPRQERAADP
                     RPAADSKFAGREGVIYTVQGKGGLVREVLIPSPLAERLEHVRLASPVRVTDRGVFYQSQ
                     YAIGGGQRWSNAFSAASMRTLGWSRGAHGVRHSYAQQRMQELQKLGLVRDMALRTVSQE
                     MGHFRPEITETYLR"
                     /name="integrase"
     gene            complement(1380..1601)
                     /locus_tag="JMW81_RS26510"
     CDS             complement(1380..1601)
                     /locus_tag="JMW81_RS26510"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016947202.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_016162091.1"
                     /translation="MEFDTAAELAALQAQTRRIRQVRYRPSRLDRYTGELLSLYQAGAS
                     AAELQRWLRARRIKVVLSTVTRWLEKNG"
                     /name="hypothetical protein"
     gene            complement(2656..2766)
                     /locus_tag="JMW81_RS26515"
     CDS             complement(2656..2766)
                     /locus_tag="JMW81_RS26515"
                     /inference="COORDINATES: protein motif:HMM:NF033853.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="small membrane protein"
                     /protein_id="WP_140392701.1"
                     /translation="MDFVLLAIAIALLVVAVYSGISYFREKKSISRAFRR"
                     /name="small membrane protein"
     gene            complement(2969..3247)
                     /locus_tag="JMW81_RS26520"
     CDS             complement(2969..3247)
                     /locus_tag="JMW81_RS26520"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_217808865.1"
                     /translation="MMRVLSLGAILMAMSALPLTAISQVTLAPDGSYVSGSEATLAPDG
                     SYVGGSEVTLAPDGSYVGGSEVTLAPDGSYVGGSEATLAPDGSYVGN"
                     /name="hypothetical protein"
     gene            complement(3379..3570)
                     /locus_tag="JMW81_RS26525"
     CDS             complement(3379..3570)
                     /locus_tag="JMW81_RS26525"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_049106033.1"
                     /translation="MLKKDDIIFMKSCGNAKTIIFLRGVDEKLMINASFEEIKFAINNN
                     LQELPGVQAVAATLKIAT"
                     /name="hypothetical protein"
     gene            3812..4922
                     /locus_tag="JMW81_RS26530"
                     /pseudo=""
     CDS             3812..4922
                     /locus_tag="JMW81_RS26530"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_076611476.1"
                     /GO_function="GO:0004803 - transposase activity [Evidence
                     IEA]"
                     /note="frameshifted; internal stop; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo=""
                     /codon_start=1
                     /transl_table=11
                     /product="IS3 family transposase"
                     /name="IS3 family transposase"
     gene            5818..6009
                     /locus_tag="JMW81_RS26540"
     CDS             5818..6009
                     /locus_tag="JMW81_RS26540"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000166328.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Rop family plasmid primer RNA-binding protein"
                     /protein_id="WP_016947206.1"
                     /translation="MTKQQKTALNMAKFIQNQSLLLLEKLNELDLDAEADLCEKLHDDA
                     EHLFRTLSLRLDALQEGD"
                     /name="Rop family plasmid primer RNA-binding protein"
     gene            6009..6413
                     /locus_tag="JMW81_RS26545"
     CDS             6009..6413
                     /locus_tag="JMW81_RS26545"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016162088.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="WP_099755384.1"
                     /translation="MAKVSISEAARLTGKSRTTLHRLIKAGELSTCRGERNAKMLETSE
                     LLRVFGAFAPVSVEQAEEQVSGQRDTVTSDRNEQVIHTLKQEIEHLNTLLASKDSHIDS
                     LKQAMLLLENREEKRQNTTRPRAWWRFWQS"
                     /name="helix-turn-helix domain-containing protein"
     Typing          complement(5294..5770)
                     /name="ColRNAI_rep_cluster_1987"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="91.079"
                     /coverage="92.0"
                     /evalue="0.0"
ORIGIN
        1 tgtaccagca ggccggacgc gcgctgattc agtgcctccg tctgttcctc cagttcctgc
       61 ctggcttctt cccgggcatt ctgcaacgcc tgacgccagc gcttttctct tttcgcatac
      121 tcttcccgca gtacattcgc cgcatcacaa tagtgactgt gcagggtttc tgtcttcatg
      181 ttgtgatccc tgataagggc attttgtctg gcggtatgcg cctcttctgc ctccctcagt
      241 gcctgctgat atccgcttat ctcgcgctgt atccggcggg actctgagct tctgaaaaac
      301 aaaatgaaca gccacagcga gaacgctgtg gctgcgatcc ccgtagccag gattgcggga
      361 ccgagttcgg tgaccgcctt ccagccagtg aacagctgcg gattactggc atccggatag
      421 taaacgccca tatgtttcag ctcatacagg gcgtacgcga tggcgaaaac accggtacac
      481 aataaaataa acgttcttgt catcgcaggt atgtctccgt gatttccgga cgaaaatggc
      541 ccatttcctg gctgacggtg cgcagggcca tatcacgaac cagaccgagt ttttgcagct
      601 cctgcatccg ttgctgggcg tagctgtgac gcacgccgtg tgccccccgt gaccagccca
      661 gggtacgcat ggaggcggca ctgaaagcgt tcgaccagcg ctggcctccg ccaatggcgt
      721 actgactctg gtaaaacacg ccgcgatcgg tcacccggac cgggctcgcc agcctgacat
      781 gctccagacg ttcagccagg ggggacggta tcaggacttc cctgaccagg ccgcctttgc
      841 cctgaacggt gtaaatcaca ccctcccgac cggcaaattt actgtccgct gccggacggg
      901 gatccgctgc tcgctcctgg cggggcgcga gggtcagcag ttcatgggcg cgtaatccgg
      961 cggccagggc aatcgcggtg gccagagcgt tggcgggctg ttgtgctgcg gcaatcaggg
     1021 ctacctggtc cgggctgtag gcccggctgc tcaggatctg tgcctgctcc gatttcacca
     1081 ccggcaggtg ttcgccggca gggagggtct gcgtcacgtg gatcatcatg gcctggatgg
     1141 cctggcgttc catatcgagc gttttctggc cgacctgctc cccgcgctgc tccaggtagg
     1201 tgatggcctg cgccggtgtc agtgtgcgta aatcaccgtg gttgagccgg ttctctttca
     1261 tccactctgc gacgcgggtc agtccctgct cgtaattccg gactgtgccg acagagcgca
     1321 gaatatttcc ctggagtggt tttatcacgc cagccgcctg gcgggcagcg ctggcgaatt
     1381 tagccatttt tttccagcca gcgggtaacc gtggacaaca ccactttgat tctccgggcc
     1441 cggagccagc gttgcagctc cgctgcactc gccccggcct ggtacaggct cagcagttcg
     1501 ccggtatagc ggtcgaggcg ggagggacgg tagcggacct ggcggatacg gcgggtctgc
     1561 gcctgcaggg cggccagttc ggcagcggta tcaaattcca tctgtactcc ggtgtgtaag
     1621 aacatcagtg gaaatccact gcggcactgg ccgattcgcc ctcgtttaaa ccgtatcgtg
     1681 gttcagcccg gactgctcgc ggctgtagta aaaatgacgt ccctttagcg tgggaggcgc
     1741 gtggcccgtt tgtgggcctg acagatttgg gctgttttct cagagttctc ggattgggct
     1801 gcccggtaca gtatccccgg agggacccgg ctgtttaacc tgctgccggt aggcaggtgc
     1861 gcgtcagagt gcgcagtctc atggtttgac taaatactag ccaggttttt cgtgcgtgtg
     1921 aatgttgttt tttaaatgtt gcgtctgact ccgatcaata gcgactcccg ctatgtacag
     1981 gcgcatttta tgcgtcgtac atagcgggag tcgcaggtgc tgatttggcg gaataaaaaa
     2041 caccgggact gaccgccccg gaccccgcca acggtgaccg gacagacaaa aaatttgcct
     2101 gcccggtcac cgtttcacat catggcgagg aggcgggatc tgaaacggtg tgatgaaagt
     2161 gcagatgagg tcagacgatg caggtcggtg agtccgtggt gaacgcgata gtggaatacc
     2221 acgcacaggg cagtgaggag gcgcatgcag aggaaaacag gatgttcctg cgttatctgc
     2281 gcgagttaac gggaacacag cgtgtggcgg ttgaggtggc caggaaatat ttttctccgg
     2341 tgaggggctg atatgagcta cctttttctt gtcgccggta ccgcaccagg tgcgacggtc
     2401 cttttacagc gttgtcctca tttgacgggc ctggatggcc cgttctttta tgcttttaac
     2461 gtccggggcc cttttctcgg ccgaaatcac ctactatgcg gtggtgtgca tagccatgca
     2521 tgtgcgtaaa ataaatcagg tgcgtttctg gcgggttttc gggtggtttg ttgcctgttt
     2581 taccggtttc ccgtcagaaa cgccctgagg ccgttttcgc ggtgcgcgta agaagacgtt
     2641 atgttaaata gggcgctatc gcctaaatgc acgactgatt gatttttttt ctctgaagta
     2701 tgagattcct gagtagacag ctacaacaag tagagcaatg gcgatagcaa gtaaaacaaa
     2761 gtccataagt acctgattaa tttaataaaa aacctgttat gattagttat tgtaagtggt
     2821 tttcattctt ttttcattac acttattgct ttgagctaat ggttcctgag gacgcattgt
     2881 tcagtacacg taagaagacg ttatgataaa tccaaaaatg ctggcattcg gaattcagta
     2941 tatcggtacg cagcataata atggggggtt aatttccaac gtatgagcca tcaggtgcta
     3001 aggttgcttc cgaaccacca acgtatgagc catcaggtgc taaggttact tccgaaccac
     3061 caacgtatga gccatcaggt gctaaggtta cttccgaacc accaacgtat gagccatcag
     3121 gtgctaaggt tgcttccgaa ccactaacgt acgatccatc aggtgctaag gttacttggg
     3181 atatcgcggt tagtggtaat gctgacatag ccattaaaat ggcaccaaga gataatactc
     3241 tcatcactat tactcctgtt aatatcaaaa atagaattga atcgttcagc ggtgccgaac
     3301 gccggttcca gccgcgggat tcgtgatcgg gatgttatag taaattgatc tcttgatttt
     3361 gagtgccctt actcgaaatc aggttgctat tttcagtgtc gcggctactg cttgtacccc
     3421 cggaagctcc tgaagattat tattgatagc aaactttatc tcttcaaagc tcgcgttaat
     3481 catgagcttc tcatccacgc cacgtaaaaa tattattgtt tttgcattac cacatgattt
     3541 cataaagata atatcatctt tttttagcat gatactgtcg ttacttagtg tagtgagata
     3601 aagcatagcc actgtttttg tgtgtttttg ttaaggctgt taagattatt cctaaccact
     3661 gattttgtac atatcatcaa aaaaaataaa aaaactaatg cccccgtggt gggtatataa
     3721 caaatcacgg ggagcggagc tgacctgctc cccgttgatt aatacaccgc gatgttagta
     3781 atgtcttcat aagccacatg aggacatcct catgaagaag cgtttttccg acgaacagat
     3841 catcagtatt ctccgcgagg ccgaagccgg ggtttctgcc cgtgagctct gccgtaagca
     3901 cgccatttcc gacgccatct tttacacctg gcgtaagaag tatggcggta tggaggtgcc
     3961 cgaggttaag cgccttaagt cgcttgagga agagaacgcc agactcaaga aactgcttgc
     4021 cgaagccatg ctggataagc aggcgcttca ggtggctctg gggcgaaagt actgacgaca
     4081 gaccagaagc aggaagccgt tgagtttatg tgtgatgcga ccggtctgtc gcaacgtagt
     4141 gcctgcaggc ttacaggttt gcccctgtcg acctgccgct atgaggctca gcgttcggcg
     4201 gctgatgcgc atttatcact gagctggcac tggagcgcag gcgttttggc taccgacgca
     4261 tctggcagtt actgcgccgt gaaggccttc atgttaatca caagcgcgtg taccgtcttt
     4321 accaccttaa cgggctgggt gtaaaacgca gacgacgtcg taaaggtctg gcaacagaac
     4381 gtctgccgct gctccgcccg gaggcgccca acctgacctg gccgatggat tttgtcatgg
     4441 acgcgctggc caccggtcgc aggatcaagt gcctgacctg cgtggacgac ttcacgaagg
     4501 agtgtctgac aattaccgcc gtcttcggga tttcaggcgt tcaggtcacg cgaattctgg
     4561 acagcattgc actgtttcgc ggctatccgg cgacgataag aactgaccag gggccggagt
     4621 ttacctgcag agcactcgac cagtgggctt atgagcatgg ggtggagcta cggcttatcc
     4681 agccgggcag gccaacacag aacggattta ttgaaagttt taacggacga ttcagggatg
     4741 agtgcctcaa tgagcactgg ttcagcgata tcgttcacgc caggaaaacg attaatgact
     4801 ggcggcagga ttagagcgag tgtcgtccac attcatcgct gaactaccag actccggctg
     4861 aatttgcggc gggctggcga aacgggaaat atgaagaaaa acgaaccgac attactaact
     4921 gaaggttgta tctaatcctg gggggcaggt caaccgcgtt ggatgattgt ggatcatgat
     4981 tatatatgtt ttttttctta tcagaaacaa tgggttaaat agttttattt tgatggttgg
     5041 tgtcgcggag tggtgctggt ttcacttcag gggtaggcat atggaacagg atcctcttga
     5101 gatcctttct ttagcatcgt aatctcttgc tcagtaaacg aaaaaaccgc cctgcaaggc
     5161 ggttttttcg aaggttctct gagctaccaa ctctttgaac cgaggtaact ggcttggagg
     5221 agcacagtca ccaaaactgt tcgtttagtt tagccttaac cggcgcataa cttcaagtcc
     5281 atctcctcta aatcagttac cagtggctgc tgccagtggc gcttttgcat gtcttaccgg
     5341 gttggactca agacgatagt taccggataa ggcgcagcag tcggactgaa cggggggttc
     5401 gtgcatacag tccagcttgg agcgaactgc ctacccggaa ctgagtgtca ggcgtggaat
     5461 gagacaaacg cggccataac agcggaatga caccggtaaa ccgaaaggca ggaacaggag
     5521 agcgcacgag ggagccacca gggggaaacg cctggtatct ttatagtcct gtcgggtttc
     5581 gccaccgctg atttgagcgt cagattctgt gatgcttgtc aggggggcgg agcctatgga
     5641 aaaacggcaa cgccgtggcc tttgccacag gctcttctct tcctggtgat agcgattact
     5701 cttctgtgtg tcccgtccgc tcgccgcagc cgaacggcag gagcgtagcg actgagtgag
     5761 cgaggaagcg gaaaagagac cggtttgaca ctgagcactg acgccctgag gccccttatg
     5821 acgaaacaac agaaaactgc cctgaacatg gctaaattca tccagaatca gtccctgctc
     5881 ctgctggaga agcttaacga gcttgatctc gatgcggagg ctgacctttg tgagaaactc
     5941 cacgatgatg cggagcatct tttccgtaca ctgtccctca gactggatgc actacaggag
     6001 ggtgactgat ggcgaaagtg tcgatcagtg aggctgcacg cctgacgggt aagagcagga
     6061 caaccctgca caggttaatt aaagccggtg aactgtccac ctgtcggggt gaacggaatg
     6121 cgaaaatgct cgagacttca gagcttttgc gggtgtttgg tgcctttgcg ccggtatccg
     6181 ttgaacaggc ggaagaacag gtcagtggac agcgtgacac agtcacttct gaccgtaatg
     6241 aacaggtcat tcatactctg aaacaggaaa ttgaacacct gaacaccctt ctggcctcaa
     6301 aagattcaca tatcgacagt ctgaaacagg cgatgttgtt gctggagaac cgggaagaga
     6361 agcggcagaa cacgacccgg ccccgtgcct ggtggcgttt ctggcagtcc tgaaatgcct
     6421 cagtgttttt gccctgctgt tccgtcagtg gcctggagtt tttccagttt ccgtctgcgc
     6481 cgttccgctg ttgcgctggc attttgtcgc cttttctctg cttcctctgc ctccagacgg
     6541 gcccgcatgg cgttatgccg ctctccggca acatactttc tgacttcctc cattctggct
     6601 ttcagtgtct gctcc
//
