LOCUS       NZ_LR890575             3223 bp    DNA     circular CON 18-JUN-2023
DEFINITION  Klebsiella pneumoniae strain INF327 isolate INF327 plasmid 5,
            complete sequence.
ACCESSION   NZ_LR890575
VERSION     NZ_LR890575.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA3357203
            Assembly: GCF_904866195.1
KEYWORDS    RefSeq.
SOURCE      Klebsiella pneumoniae
  ORGANISM  Klebsiella pneumoniae
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Klebsiella/Raoultella group; Klebsiella.
REFERENCE   1
  AUTHORS   Hawkey,J.
  TITLE     Direct Submission
  JOURNAL   Submitted (16-OCT-2020) THE UNIVERSITY OF MELBOURNE, 30 Flemington
            Rd, Australia
COMMENT     ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 06/18/2023 15:42:07
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.5
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,532
            CDSs (total)                      :: 5,414
            Genes (coding)                    :: 5,283
            CDSs (with protein)               :: 5,283
            Genes (RNA)                       :: 118
            rRNAs                             :: 9, 8, 8 (5S, 16S, 23S)
            complete rRNAs                    :: 9, 8, 8 (5S, 16S, 23S)
            tRNAs                             :: 84
            ncRNAs                            :: 9
            Pseudo Genes (total)              :: 131
            CDSs (without protein)            :: 131
            Pseudo Genes (ambiguous residues) :: 0 of 131
            Pseudo Genes (frameshifted)       :: 54 of 131
            Pseudo Genes (incomplete)         :: 80 of 131
            Pseudo Genes (internal stop)      :: 22 of 131
            Pseudo Genes (multiple problems)  :: 22 of 131
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            LR890575.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..3223
                     /organism="Klebsiella pneumoniae"
                     /mol_type="genomic DNA"
                     /strain="INF327"
                     /isolate="INF327"
                     /isolation_source="urine"
                     /host="Homo sapiens"
                     /db_xref="taxon:573"
                     /plasmid="5"
                     /geo_loc_name="Australia"
                     /collection_date="2014-03"
     gene            complement(994..1326)
                     /locus_tag="JMX40_RS27530"
     CDS             complement(994..1326)
                     /locus_tag="JMX40_RS27530"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008784643.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="EmrE family multidrug efflux SMR transporter"
                     /protein_id="WP_001099531.1"
                     /translation="MNTYIFLGGAIVAEVIGTTFMKYSEGFTRLWPSVGTAISYCAAFY
                     LLSQTLENIPTGIAYAIWSGAGIVLISLAGWLVSGQKLDWPAIAGMFLICVGVLVINIF
                     SKSSAH"
                     /name="EmrE family multidrug efflux SMR transporter"
     gene            complement(1494..1709)
                     /locus_tag="JMX40_RS27535"
     CDS             complement(1494..1709)
                     /locus_tag="JMX40_RS27535"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000137421.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MbeD family mobilization/exclusion protein"
                     /protein_id="WP_024195375.1"
                     /translation="MTELEKQLLSALEQLQQDYSKRLDEWENAFAEWRTMSGLIQRENA
                     ALNERVTVLSRQVQSLSEQLRRLSKG"
                     /name="MbeD family mobilization/exclusion protein"
     gene            complement(1713..2198)
                     /locus_tag="JMX40_RS27540"
     CDS             complement(1713..2198)
                     /locus_tag="JMX40_RS27540"
                     /inference="COORDINATES: protein motif:HMM:NF016710.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MbeB family mobilization protein"
                     /protein_id="WP_025367738.1"
                     /translation="MNSLLTLAKDLEQKSKAQQQTTGEMLKAAFSEHEKSVRAELSESE
                     KRISAAILDHDRKLSSAMSQRTKGMLRMVSQTWLTIVLVSALLIASSAGILWWQGQQIL
                     ENYTTIREQKSTQAMLSERNSGVQLSTCGEQRRRCVRVNPEAGQFGEDSSWMILAGK"
                     /name="MbeB family mobilization protein"
     gene            complement(<2233..2667)
                     /locus_tag="JMX40_RS27915"
                     /pseudo=""
     CDS             complement(<2233..2667)
                     /locus_tag="JMX40_RS27915"
                     /inference="COORDINATES: protein motif:HMM:NF015397.2"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo=""
                     /codon_start=1
                     /transl_table=11
                     /product="relaxase/mobilization nuclease domain-containing
                     protein"
                     /name="relaxase/mobilization nuclease domain-containing
                     protein"
     gene            complement(2876..3199)
                     /locus_tag="JMX40_RS27550"
     CDS             complement(2876..3199)
                     /locus_tag="JMX40_RS27550"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000957083.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MobC family plasmid mobilization relaxosome
                     protein"
                     /protein_id="WP_004193914.1"
                     /translation="MLTMWVTEDEHRRLLERCEGKQLAAWMRQTCLDEKPARAGKLPSI
                     SPALLRQLAGMGNNLNQIARQVNAGGGSGHDRVQIVAALMAIDAGLERLRHAVLEKGAD
                     DDR"
                     /name="MobC family plasmid mobilization relaxosome protein"
     ARG             complement(995..1326)
                     /name="qacG"
                     /gene="qacG"
                     /gene_name="small multidrug resistance (SMR) antibiotic
                     efflux pump"
                     /tool="rgi"
                     /drug_class="disinfecting agents and antiseptics"
                     /identity="41.35"
                     /coverage="102.8"
     Typing          complement(73..264)
                     /name="MOB_unknown"
                     /typing="oriT"
                     /tool="MOB-suite"
                     /identity="92.308"
                     /coverage="89.0"
                     /evalue="3.38e-71"
     Typing          244..727
                     /name="ColRNAI_rep_cluster_1987"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="84.756"
                     /coverage="93.0"
                     /evalue="1.73e-132"
     Typing          complement(1397..2886)
                     /name="MOBP"
                     /typing="relaxase"
                     /tool="MOB-suite"
                     /identity="91.784"
                     /coverage="100.0"
                     /evalue="0.0"
ORIGIN
        1 ggcctcctga taacgccggg acggacggga aatcttttcc cggtcggcac ggtgttggac
       61 aagccgcagg cgcggcagtg gttttagcgg gtttcggggc gcagccctga accagtcacg
      121 tagcgctagc ggagtgtata ctggctaaac atgttatgac ggagtggcaa tttatgaaag
      181 tgcttcatgt gacaggggaa aaatgcggct gccgggcgta agtgcaaaat gcaggtggtg
      241 atgaaatgac gcctcctcgc tcactcggtc gctacgctcc tgccgtgaga ctgcggcggg
      301 cgttaccagc tcacagatta cgggataagc aaatgccgct cgaagcagga aaggccaaga
      361 aaaggatgcg gagttgccgt ttttccatag gctccgcccc cctgacgagt atcacgaaaa
      421 tgacgctcaa atcagcggtg gcgaaacccg atgcggctta aagataccag gcgtttcccc
      481 ctggtggctc cctcgtgctc ccccgcattc ctgcctttcg gtttaccggt gtcattccgc
      541 tgttatggcc gcggtttctc attccacgcc tgaaactcgg ttccgggtag gcagttcgct
      601 ccaggatgga ctgtatgcac gaaccccccg ttcagtccga ctaccacgcc cgttccggta
      661 actatcaact tgagtccaac ccggaaagac acgacaaatc gccagtggcg gtagccattg
      721 gtaactgggt tcacggagca gagattgtag agaatgccta cagagttctt gaagtgaaag
      781 cctgagtgcg gctacactga aaggacagtt taggtatctg cgctccgtga aagccagtta
      841 ccatcggaac aaagagttgg tagctctgaa ttccggcaaa cgaaccaccg ttggtagcgg
      901 tggttttttt gtttacaggg aaaaagatta cgcgcagaaa gaaaggatct caaggaaatc
      961 cttttgcttt ggccaatatg cttcggtaaa aagttaatgc gcagaagatt ttgaaaaaat
     1021 attaataacc aaaactccaa cgcaaataag gaacattcct gcaattgcgg gccaatcaag
     1081 tttttgaccg ctaaccaacc aaccagctag gcttattagt acaattcccg caccagacca
     1141 aattgcgtaa gcaataccgg taggtatatt ttccaatgtt tgggaaagca gataaaaggc
     1201 agcgcaataa cttattgcag ttcctacaga cggccacagg cgtgtaaatc cttctgaata
     1261 tttcataaag gtggtgccta tgacttcagc cacaatagcc cctcccagga aaatatatgt
     1321 attcataaaa atacctcatg ttgaaaaatt taaatatctt tacataacaa ctaattaata
     1381 gaacccggct tatcatagcg aaggaccatg atgctgccac tgcgatcgtt ccagctccag
     1441 cgctttctgg tgctgcaccg cccgctcctg ctgccggtga gtttctatcg cgttcagcct
     1501 ttcgacaacc ggcgcagctg ctcgctcaaa ctctgcacct gcctgctcaa gaccgtgacg
     1561 cgctcgttca gcgccgcgtt ctcccgttga ataagaccag acatcgtccg ccattccgcg
     1621 aaggcgttct cccactcgtc cagccttttc gagtagtcct gctgtagctg ctctaatgcg
     1681 ctcagcaact gtttttccag ctccgtcatg tgctatttcc ccgccagtat catccagctc
     1741 gagtcctctc cgaactgtcc cgcttccggg ttcaccctca cgcagcggcg tctctgctcg
     1801 ccgcaggtcg agagctgtac gccgctgttc ctctctgaca gcatggcctg cgtgctcttc
     1861 tgctcccgga tggtcgtata gttctcgagt atctgctgcc cctgccacca cagaatgccc
     1921 gcgctcgacg ctatcagcag cgcggagacc agaacgatgg tcagccacgt ctggctgacc
     1981 atgcgcagca tccctttcgt gcgctggctc atggctgagg acagcttccg gtcgtggtcg
     2041 aggatggcgg cgctgattct cttctcgctt tcgctcagtt ccgctctgac agacttctcg
     2101 tgctcgctga atgcggcttt cagcatctcg ccggtagtct gctgctgcgc tttcgatttc
     2161 tgctctaagt ccttcgccag cgttaaaaga ctgttcatag atggctccct tcagtcggat
     2221 gtttcgcccc ccgtccgggt cggcaatgct gatgctgctt tttgtggtgc gcaccacctc
     2281 aaaacctgcg ctttccagcg cctcagtgac gtcctgacgc gttttcagct ccccggatga
     2341 ggcaagggca agcaggccgc tcgtaatcgc ctgggcggct tcctgcttcg cttccggcag
     2401 cgcggaaggc gagaccagca cccgccggtt ctccggcgcg ttcgggtcat gcagccccag
     2461 cctgccgttc actatggtct gccaggcatc gatgcgcgga cggtcggcgc ggtcgtaata
     2521 cggctgtagc cgcttgccgg tcagaagctc cgtgttcggg atcaggaagt tcagctccag
     2581 ccgccccttg tcccggtgct caacccacag cacgctgtac tggtctttat cgagtccggg
     2641 catcagaacc cgctcgaaac tcgccatcag cttttcgcgc tggccgggcg gtaaatcctg
     2701 ttcggcaaaa gacagaacgc cggaagtgta ctttttggcg tagggcgagg cgtcgataag
     2761 ctcccggact tcatccggct tcccctgcag aacgctggcg ccgtcgcgct ggcgatcttt
     2821 acccagcaga taatcgaccg gcccgccgcc gccgccgcgc ccccgaggat gaaacttaac
     2881 gatcatcatc agcacccttt tccagtacgg catgccgcaa ccgctcgagt ccggcatcga
     2941 tggccatcag cgcggcgaca atctgcacgc ggtcgtgtcc gcttccacca ccggcgttaa
     3001 cctggcgggc aatctggtta aggttgttcc ccatgccggc aagctgacga agcagcgccg
     3061 gcgagatcga cggaagtttg ccggcgcgtg cgggcttctc gtccaggcac gtctgccgca
     3121 tccaggccgc gagttgctta ccctcgcagc gctccagcag acgccggtgc tcgtcctcag
     3181 tcacccacat ggtgagcatt ttgctgcgtt tgtctgccaa tcc
//
