LOCUS       NZ_LR890574             4064 bp    DNA     circular CON 18-JUN-2023
DEFINITION  Klebsiella pneumoniae strain INF327 isolate INF327 plasmid 4,
            complete sequence.
ACCESSION   NZ_LR890574
VERSION     NZ_LR890574.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA3357203
            Assembly: GCF_904866195.1
KEYWORDS    RefSeq.
SOURCE      Klebsiella pneumoniae
  ORGANISM  Klebsiella pneumoniae
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Klebsiella/Raoultella group; Klebsiella.
REFERENCE   1
  AUTHORS   Hawkey,J.
  TITLE     Direct Submission
  JOURNAL   Submitted (16-OCT-2020) THE UNIVERSITY OF MELBOURNE, 30 Flemington
            Rd, Australia
COMMENT     ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 06/18/2023 15:42:07
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.5
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,532
            CDSs (total)                      :: 5,414
            Genes (coding)                    :: 5,283
            CDSs (with protein)               :: 5,283
            Genes (RNA)                       :: 118
            rRNAs                             :: 9, 8, 8 (5S, 16S, 23S)
            complete rRNAs                    :: 9, 8, 8 (5S, 16S, 23S)
            tRNAs                             :: 84
            ncRNAs                            :: 9
            Pseudo Genes (total)              :: 131
            CDSs (without protein)            :: 131
            Pseudo Genes (ambiguous residues) :: 0 of 131
            Pseudo Genes (frameshifted)       :: 54 of 131
            Pseudo Genes (incomplete)         :: 80 of 131
            Pseudo Genes (internal stop)      :: 22 of 131
            Pseudo Genes (multiple problems)  :: 22 of 131
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            LR890574.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..4064
                     /organism="Klebsiella pneumoniae"
                     /mol_type="genomic DNA"
                     /strain="INF327"
                     /isolate="INF327"
                     /isolation_source="urine"
                     /host="Homo sapiens"
                     /db_xref="taxon:573"
                     /plasmid="4"
                     /geo_loc_name="Australia"
                     /collection_date="2014-03"
     gene            complement(join(3111..4064,1..306))
                     /gene="mobQ"
                     /locus_tag="JMX40_RS27500"
     CDS             complement(join(3111..4064,1..306))
                     /gene="mobQ"
                     /locus_tag="JMX40_RS27500"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="MobQ family relaxase"
                     /protein_id="WP_099745348.1"
                     /translation="MALYRLEMQNVSRSDGVSSVAKAAYRHRSVMIDERTGEIHGEKSA
                     NRDDLVYAEILAPEGTPDFLIKSSNDLWNYVEKTEKRKDARTAKEFKITLPCELTNEQN
                     IKLLKEYLTKNFVSKGIICDFVIHNDKDNKNPHAHVMITTREITLSGFGKKVRSWDEEK
                     TLHDWRKQWAKVQNQHLKNAGLKSRVSHRTLEEQKNIMIDLAKKAEDAKDFDKSILYLA
                     KAIELDRPPMQNLSRKKWRTKEGQEQRKRDQAIRDRARADARAFRLLRGVAVVDVASFV
                     VHPLEKKEQSKNNDFSEKKSWWRSTVNFIKNIKAKFSTKKDIKNDVHASDDLMTDPVTG
                     LPITKAKWQEMSDRANVRTPQPAISYQVKQSDGEGLKTAQNALQDVLDVSEGKSLKVKS
                     VPVPGSRKRRVVEEDSSDNG"
                     /name="mobQ"
     gene            566..997
                     /locus_tag="JMX40_RS27505"
     CDS             566..997
                     /locus_tag="JMX40_RS27505"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_157769352.1"
                     /translation="MNKKQALWIGGKMNKKEIEKRLLIFTSEIDIEDIKNDFINDEVNE
                     DVFNRCLKLYYAIDDAIYNNKKSLFEALIYLINKDRENKDHDEPIITDYDLVYLTLNNY
                     INIYELKKLFLLQKNINDFDFKSMISEIEKIKREVEYGK"
                     /name="hypothetical protein"
     gene            987..1265
                     /gene="traD"
                     /locus_tag="JMX40_RS27510"
     CDS             987..1265
                     /gene="traD"
                     /locus_tag="JMX40_RS27510"
                     /inference="COORDINATES: protein motif:HMM:NF018152.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="conjugal transfer protein TraD"
                     /protein_id="WP_099745350.1"
                     /translation="MGSKKTLEQRMALAQDRLSKLKKEASQKERKAREHKKFTVGGEVT
                     RVFGLDYDLALVVGFLEHFNKLSDEQKQALKNNGERLLKSRLENADK"
                     /name="traD"
     gene            1398..1664
                     /locus_tag="JMX40_RS27515"
     CDS             1398..1664
                     /locus_tag="JMX40_RS27515"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_113519627.1"
                     /translation="MSQKKEQKTAEKPTAGPLRKHRSRAEKIDDLKKQISELRKAEREE
                     RQRARDEKLIILAKAVYEKAGKPKDIEALIDFVKSEDFKIEYK"
                     /name="hypothetical protein"
     gene            complement(1679..1948)
                     /locus_tag="JMX40_RS27520"
     CDS             complement(1679..1948)
                     /locus_tag="JMX40_RS27520"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001549724.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sigma factor-like helix-turn-helix DNA-binding
                     protein"
                     /protein_id="WP_099745351.1"
                     /translation="MKGNEIRKGLTQKEMAKKFNLSLSTVKKYTSQPREHYESEAENRR
                     KTAYTLHHKKGLKWREVAEKMNTTENAVKALAKRYKQIDQENRG"
                     /name="sigma factor-like helix-turn-helix DNA-binding
                     protein"
     gene            complement(1945..2802)
                     /locus_tag="JMX40_RS27525"
     CDS             complement(1945..2802)
                     /locus_tag="JMX40_RS27525"
                     /inference="COORDINATES: protein motif:HMM:NF015076.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="replication initiation protein"
                     /protein_id="WP_099745352.1"
                     /translation="MILQKEYSRSDFINQIISRPFCTDDFKRDGIYRTNKRRALNSVYI
                     EHNNDSFINSIVFDIDSDTAAIAWQDADIPKPNFITQNPANGHAHLFYALSSPVCITEN
                     ARRKPQKLLKGVIEGLTERLGADPCYTGKITKNPLNPRWRTFWNEQPRFELNYLCEFID
                     TNKRVKKEVRKSIVAEGRNTALFDSLRFYAYSIIFKYQKNDDFCGFISALQEEAENIND
                     SFEDQLSFKEINHTIRSISSWVWGTFDSDTFSEIQSNRAKKAKGKTKTNTKAKKLIEFI
                     GVKK"
                     /name="replication initiation protein"
     Typing          complement(3115..4064)
                     /name="MOBQ"
                     /typing="relaxase"
                     /tool="MOB-suite"
                     /identity="100.0"
                     /coverage="100.0"
                     /evalue="8.480000000000002e-179"
ORIGIN
        1 ttcattggta agttcacaag gcaaagttat tttaaattct tttgctgttc ttgcgtcctt
       61 tctcttctct gttttttcaa catagttcca tagatcattg cttgatttaa tcaaaaaatc
      121 tggcgttcct tctggtgcca atatttcagc ataaaccaga tcgtcacgat tagctgattt
      181 ctcgccgtgt atttctccgg ttcgttcatc tatcatgacg gaacgatgac gataagcagc
      241 ttttgcaact gagctgacac catccgaacg actaacgttc tgcatttcta atctatataa
      301 agccatataa ttatatcctc atgagaaccc ctattttttc ttttgggttt gggttttagt
      361 ttttcgtaag aaaaacaggt tttagccgtc ggcagacccc ggcattgttt acaatgcgta
      421 accgggcatt ccttagcttt tatttttcgc taacgctcaa actaaaagag gaatgaaaaa
      481 caaactagct tttctttcac tgatatatat aaattaactc tgattaaatt aaagtcaaat
      541 ttgacaatat ttaaaagtta cgatattgaa taaaaaacaa gcattatgga ttggtggtaa
      601 aatgaataaa aaagaaatag aaaaaaggct attgattttt acaagcgaga tcgacattga
      661 agatattaaa aacgatttca tcaatgacga agttaatgaa gatgttttta ataggtgttt
      721 aaagctgtat tacgctatcg atgatgcaat ctataacaat aaaaaatcat tgtttgaagc
      781 gttgatatat ttgataaata aagatcgtga aaataaagat catgatgaac caattataac
      841 tgattatgat cttgtgtatt taacactaaa taattacata aatatctatg aactgaaaaa
      901 gttgttttta ttacaaaaaa atatcaatga ttttgatttt aaaagtatga tttcagagat
      961 agaaaaaatt aaaagagagg ttgagtatgg gaagtaaaaa aacgttagag caaagaatgg
     1021 cacttgcaca agatagatta tctaaactta aaaaagaagc atcgcagaaa gaaagaaaag
     1081 ctagagaaca taaaaaattt actgttggcg gtgaagttac aagggtgttt ggtttagatt
     1141 acgatctagc tcttgtagtg ggttttcttg aacactttaa caagttaagc gatgagcaaa
     1201 aacaagcgtt aaaaaacaat ggtgaaagat tgctaaaatc acgtctagaa aacgctgaca
     1261 agtgacagat ttctaatctg acacttggaa gggttgaaca agcaagaacc cgccgctggc
     1321 ggggcttgtg cgttagtctt caccgtagcc cggctttgtg atatgtttaa aaaacatatc
     1381 atccgggaga gtaaaaaatg tctcaaaaaa aagagcaaaa aacagcagaa aaaccaactg
     1441 cagggccact tcgtaaacac agatctagag ctgaaaaaat agacgattta aaaaagcaga
     1501 ttagcgaact aagaaaagca gaaagagaag aacgacaacg agcaagagac gaaaaattaa
     1561 ttattcttgc aaaagctgtt tatgaaaagg caggaaaacc aaaagatatt gaagcattaa
     1621 ttgatttcgt aaagtctgaa gatttcaaga ttgaatataa ataaagctaa ggggcatttt
     1681 agcccctgtt ttcttggtcg atttgtttgt atcttttggc taatgcttta acggcatttt
     1741 ctgttgtatt cattttttca gctacttcac gccattttaa gcctttttta tggtgtaacg
     1801 tataagctgt ttttcttctg ttttctgctt ctgattcata atgttctctt ggttgagaag
     1861 tgtatttttt tacagtgctt aaagaaagat tgaacttttt agccatctct ttttgtgtta
     1921 agccctttct tatctcgttg cctttcattt ttttactcct ataaattcta taagtttttt
     1981 tgcttttgta ttggttttag ttttaccttt cgctttcttt gctctgttgc tttgtatttc
     2041 gctgaaagta tcactatcaa aagtccccca tacccaagat gaaatgcttc ttattgtgtg
     2101 gtttatttct ttaaagctta gttgatcttc gaatgaatcg tttatgtttt cagcttcttc
     2161 ttgtaatgct gaaatgaaac cgcagaaatc atcatttttt tgatatttaa aaattatgct
     2221 gtaagcgtaa aaacgcagac tatcaaataa cgctgtattc cttccctctg caactattga
     2281 ttttcttact tcttttttta ctcttttatt tgtatctatg aactcacata gatagttcaa
     2341 ttcaaatctt ggttgttcgt tccaaaatgt acgccatctc ggattgagag ggttttttgt
     2401 tatcttgccc gtataacaag gatctgcacc taatctttcg gtgagtcctt ctataacgcc
     2461 ttttaataac ttttgtggct ttcttctggc gttttctgtt atacaaacag gagatgataa
     2521 ggcataaaat aaatgagcgt gaccattagc cggattttga gttataaagt taggcttcgg
     2581 tatatctgca tcttgccatg caatagccgc tgtatcgctg tcaatatcaa acacaataga
     2641 gttaatgaag ctatcgttgt tatgctcgat ataaacgctg tttaaagctc gtcttttgtt
     2701 tgttctataa ataccatctc ttttgaagtc gtcagtgcaa aatggtcttg atataatttg
     2761 atttataaaa tcacttctgc tatattcttt ttgtagtatc attttttaat acaatccttt
     2821 tattgtagat ccctgatttt ctcctgtcgc caaacattcg gaaatcaggg atttttgttt
     2881 ttatattact gttctaacat aacctttcat ggtgtcaagt agtcaccact aaaaaagtgt
     2941 caagtggtca ttttagccat atcaggtaat aatgggtctg ggggtatttt tgcgaagcac
     3001 aggccgaagg cttcaaatca tcacaagtta agctatagcc tgataggtac aggccgtagg
     3061 ctatgagcga agccctgtaa tcttatgtag gatctggctg tgctggttag ctaaccgttg
     3121 tcactgctgt cttcctcgac aactcgacgc ttacgagaac ccggaaccgg cacagacttc
     3181 acctttaacg atttaccctc tgatacgtct aaaacgtcct gtaacgcatt ctgagccgtt
     3241 tttagccctt ccccgtccga ttgcttaacc tgatatgaga tcgcaggctg tggagtcctt
     3301 acgtttgccc tgtcactcat ctcttgccat ttcgctttgg tgattggtaa acccgtcacc
     3361 ggatcagtca ttaaatcgtc tgatgcatgg acatcgtttt taatatcttt tttagttgag
     3421 aacttagctt taatattttt tataaaatta acagtagaac gccaccaaga ttttttttct
     3481 gaaaagtcat tattttttga ctgctctttt ttctctaacg gatgaaccac gaatgaagca
     3541 acatcaacaa ctgcaacacc tctcaacaac ctgaaagccc tagcgtcggc tctcgccctg
     3601 tctctgatag cttggtcacg tttgcgttgt tcttgacctt cttttgttct ccatttttta
     3661 cgtgataagt tctgcattgg tgggcgatct agttcaatag cttttgctag atataaaata
     3721 gacttgtcaa aatcttttgc atcttctgct tttttagcta aatcgatcat tatatttttt
     3781 tgttcttcta gtgttctatg actgacgcga gattttaagc ctgcattttt caaatgctga
     3841 ttttgaactt ttgcccattg tttacgccaa tcatgaaggg ttttttcttc atcccatgac
     3901 cttacttttt taccaaatcc tgaaagcgtt atttctcttg tcgtaatcat cacatgagcg
     3961 tgcgggtttt tattgtcttt gtcgttatgt ataacaaagt cgcaaatgat gcctttacta
     4021 acaaagtttt ttgttaagta ttctttcaat agttttatat tttg
//
